mx-bluesky 1.4.5__py3-none-any.whl → 1.4.7__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mx_bluesky/_version.py +9 -4
- mx_bluesky/beamlines/aithre_lasershaping/__init__.py +13 -0
- mx_bluesky/beamlines/aithre_lasershaping/check_goniometer_performance.py +29 -0
- mx_bluesky/beamlines/aithre_lasershaping/goniometer_controls.py +18 -0
- mx_bluesky/beamlines/i04/redis_to_murko_forwarder.py +45 -28
- mx_bluesky/beamlines/i04/thawing_plan.py +19 -14
- mx_bluesky/beamlines/i24/serial/__init__.py +14 -0
- mx_bluesky/beamlines/i24/serial/dcid.py +3 -1
- mx_bluesky/beamlines/i24/serial/extruder/EX-gui-edm/DiamondExtruder-I24-py3v1.edl +12 -12
- mx_bluesky/beamlines/i24/serial/extruder/i24ssx_Extruder_Collect_py3v2.py +31 -30
- mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_Chip_Collect_py3v1.py +16 -14
- mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_Chip_Manager_py3v1.py +19 -21
- mx_bluesky/beamlines/i24/serial/fixed_target/i24ssx_moveonclick.py +11 -4
- mx_bluesky/beamlines/i24/serial/parameters/constants.py +1 -1
- mx_bluesky/beamlines/i24/serial/set_visit_directory.sh +1 -1
- mx_bluesky/beamlines/i24/serial/setup_beamline/pv.py +16 -16
- mx_bluesky/beamlines/i24/serial/setup_beamline/setup_beamline.py +48 -49
- mx_bluesky/beamlines/i24/serial/setup_beamline/setup_detector.py +2 -2
- mx_bluesky/beamlines/i24/serial/setup_beamline/setup_zebra_plans.py +11 -9
- mx_bluesky/beamlines/i24/serial/web_gui_plans/general_plans.py +109 -0
- mx_bluesky/beamlines/i24/serial/write_nexus.py +5 -4
- mx_bluesky/common/device_setup_plans/xbpm_feedback.py +45 -0
- mx_bluesky/common/external_interaction/callbacks/common/ispyb_callback_base.py +2 -4
- mx_bluesky/common/external_interaction/callbacks/common/ispyb_mapping.py +1 -1
- mx_bluesky/common/external_interaction/callbacks/common/plan_reactive_callback.py +2 -2
- mx_bluesky/common/external_interaction/callbacks/common/zocalo_callback.py +18 -15
- mx_bluesky/common/external_interaction/callbacks/sample_handling/__init__.py +0 -0
- mx_bluesky/{hyperion → common}/external_interaction/callbacks/sample_handling/sample_handling_callback.py +29 -12
- mx_bluesky/common/external_interaction/callbacks/xray_centre/ispyb_callback.py +43 -7
- mx_bluesky/common/external_interaction/callbacks/xray_centre/ispyb_mapping.py +1 -1
- mx_bluesky/common/external_interaction/callbacks/xray_centre/nexus_callback.py +2 -1
- mx_bluesky/common/external_interaction/ispyb/data_model.py +1 -0
- mx_bluesky/common/external_interaction/ispyb/exp_eye_store.py +6 -2
- mx_bluesky/common/external_interaction/ispyb/ispyb_store.py +21 -1
- mx_bluesky/common/external_interaction/nexus/nexus_utils.py +1 -1
- mx_bluesky/common/parameters/constants.py +3 -1
- mx_bluesky/common/parameters/gridscan.py +36 -1
- mx_bluesky/common/plans/do_fgs.py +4 -6
- mx_bluesky/common/plans/read_hardware.py +78 -0
- mx_bluesky/common/plans/write_sample_status.py +46 -0
- mx_bluesky/common/preprocessors/__init__.py +0 -0
- mx_bluesky/common/preprocessors/preprocessors.py +105 -0
- mx_bluesky/common/protocols/__init__.py +0 -0
- mx_bluesky/common/protocols/protocols.py +10 -0
- mx_bluesky/common/utils/context.py +68 -0
- mx_bluesky/{hyperion/experiment_plans/common → common}/xrc_result.py +16 -0
- mx_bluesky/hyperion/__main__.py +7 -9
- mx_bluesky/hyperion/baton_handler.py +84 -0
- mx_bluesky/hyperion/device_setup_plans/setup_oav.py +5 -5
- mx_bluesky/hyperion/device_setup_plans/setup_panda.py +5 -1
- mx_bluesky/hyperion/device_setup_plans/setup_zebra.py +2 -2
- mx_bluesky/hyperion/device_setup_plans/smargon.py +6 -6
- mx_bluesky/hyperion/device_setup_plans/utils.py +2 -2
- mx_bluesky/hyperion/experiment_plans/__init__.py +0 -4
- mx_bluesky/hyperion/experiment_plans/change_aperture_then_move_plan.py +12 -31
- mx_bluesky/hyperion/experiment_plans/experiment_registry.py +0 -7
- mx_bluesky/hyperion/experiment_plans/flyscan_xray_centre_plan.py +44 -97
- mx_bluesky/hyperion/experiment_plans/grid_detect_then_xray_centre_plan.py +6 -6
- mx_bluesky/hyperion/experiment_plans/load_centre_collect_full_plan.py +8 -6
- mx_bluesky/hyperion/experiment_plans/oav_grid_detection_plan.py +11 -11
- mx_bluesky/hyperion/experiment_plans/oav_snapshot_plan.py +5 -5
- mx_bluesky/hyperion/experiment_plans/optimise_attenuation_plan.py +1 -1
- mx_bluesky/hyperion/experiment_plans/pin_centre_then_xray_centre_plan.py +2 -4
- mx_bluesky/hyperion/experiment_plans/pin_tip_centring_plan.py +15 -13
- mx_bluesky/hyperion/experiment_plans/robot_load_and_change_energy.py +10 -10
- mx_bluesky/hyperion/experiment_plans/robot_load_then_centre_plan.py +1 -29
- mx_bluesky/hyperion/experiment_plans/rotation_scan_plan.py +30 -27
- mx_bluesky/hyperion/experiment_plans/set_energy_plan.py +25 -6
- mx_bluesky/hyperion/external_interaction/agamemnon.py +242 -0
- mx_bluesky/hyperion/external_interaction/callbacks/__main__.py +12 -6
- mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_callback.py +1 -1
- mx_bluesky/hyperion/external_interaction/callbacks/snapshot_callback.py +107 -0
- mx_bluesky/hyperion/external_interaction/config_server.py +6 -6
- mx_bluesky/hyperion/parameters/device_composites.py +49 -0
- mx_bluesky/hyperion/parameters/gridscan.py +3 -3
- mx_bluesky/hyperion/parameters/rotation.py +1 -1
- mx_bluesky/hyperion/utils/__init__.py +1 -0
- mx_bluesky/hyperion/utils/context.py +0 -65
- mx_bluesky/hyperion/utils/validation.py +3 -3
- {mx_bluesky-1.4.5.dist-info → mx_bluesky-1.4.7.dist-info}/METADATA +6 -5
- {mx_bluesky-1.4.5.dist-info → mx_bluesky-1.4.7.dist-info}/RECORD +86 -72
- {mx_bluesky-1.4.5.dist-info → mx_bluesky-1.4.7.dist-info}/WHEEL +1 -1
- {mx_bluesky-1.4.5.dist-info → mx_bluesky-1.4.7.dist-info}/entry_points.txt +1 -0
- mx_bluesky/common/device_setup_plans/read_hardware_for_setup.py +0 -14
- mx_bluesky/common/external_interaction/callbacks/common/aperture_change_callback.py +0 -22
- mx_bluesky/hyperion/device_setup_plans/read_hardware_for_setup.py +0 -54
- mx_bluesky/hyperion/device_setup_plans/xbpm_feedback.py +0 -103
- /mx_bluesky/{hyperion/external_interaction/callbacks/sample_handling → beamlines/i24/serial/web_gui_plans}/__init__.py +0 -0
- {mx_bluesky-1.4.5.dist-info → mx_bluesky-1.4.7.dist-info/licenses}/LICENSE +0 -0
- {mx_bluesky-1.4.5.dist-info → mx_bluesky-1.4.7.dist-info}/top_level.txt +0 -0
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mx_bluesky/hyperion/external_interaction/callbacks/rotation/ispyb_mapping.py,sha256=yz2Z_P6qH2DGlSXCi36E3Xwv7mVVcvYzqQc0NqwW4DI,716
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mx_bluesky/hyperion/external_interaction/callbacks/sample_handling/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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mx_bluesky/hyperion/external_interaction/callbacks/sample_handling/sample_handling_callback.py,sha256=IyWawfc0arWXYIzq5CuRwagqlJ36yMA1riM5dw0r9Ig,2117
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mx_bluesky/hyperion/resources/panda/panda-gridscan.yaml,sha256=mhLBJTSjHCkM9F6mjtqbhNmmrV8qSctbCUfhb0q7pYo,28085
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mx_bluesky-1.4.7.dist-info/licenses/LICENSE,sha256=tAkwu8-AdEyGxGoSvJ2gVmQdcicWw3j1ZZueVV74M-E,11357
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mx_bluesky-1.4.7.dist-info/METADATA,sha256=h1Y0Q0e_XKcYDaeGkj6wzyspW4TnTd3lf188W2Ja-_g,17304
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@@ -4,5 +4,6 @@ hyperion-callbacks = mx_bluesky.hyperion.external_interaction.callbacks.__main__
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hyperion-generate-test-nexus = mx_bluesky.hyperion.utils.validation:generate_test_nexus
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hyperion-populate-test-and-meta-files = mx_bluesky.hyperion.utils.validation:copy_test_meta_data_files
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mx-bluesky = mx_bluesky.__main__:main
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redis_to_murko = mx_bluesky.beamlines.i04.redis_to_murko_forwarder:main
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run_extruder = mx_bluesky.beamlines.i24.serial.run_serial:run_extruder
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run_fixed_target = mx_bluesky.beamlines.i24.serial.run_serial:run_fixed_target
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@@ -1,14 +0,0 @@
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import bluesky.plan_stubs as bps
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from dodal.devices.eiger import EigerDetector
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from mx_bluesky.common.parameters.constants import DocDescriptorNames
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def read_hardware_for_zocalo(detector: EigerDetector):
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""" "
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If the RunEngine is subscribed to the ZocaloCallback, this plan will also trigger zocalo.
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A bluesky run must be open to use this plan
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"""
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yield from bps.create(name=DocDescriptorNames.ZOCALO_HW_READ)
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yield from bps.read(detector.odin.file_writer.id) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
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yield from bps.save()
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@@ -1,22 +0,0 @@
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1
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from bluesky.callbacks import CallbackBase
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from event_model.documents.run_start import RunStart
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from mx_bluesky.common.utils.log import LOGGER
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from .logging_callback import format_doc_for_log
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class ApertureChangeCallback(CallbackBase):
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"""A callback that's used to send the selected aperture back to GDA"""
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def __init__(self, *args, **kwargs) -> None:
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super().__init__(*args, **kwargs)
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self.last_selected_aperture: str = "NONE"
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def start(self, doc: RunStart):
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if doc.get("subplan_name") == "change_aperture":
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LOGGER.debug(f"START: {format_doc_for_log(doc)}")
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ap_size = doc.get("aperture_size")
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assert isinstance(ap_size, str)
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LOGGER.info(f"Updating most recent in-plan aperture change to {ap_size}.")
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self.last_selected_aperture = ap_size
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@@ -1,54 +0,0 @@
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1
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from __future__ import annotations
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2
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-
|
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3
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import bluesky.plan_stubs as bps
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4
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-
from dodal.devices.aperturescatterguard import ApertureScatterguard
|
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5
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from dodal.devices.attenuator.attenuator import BinaryFilterAttenuator
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from dodal.devices.dcm import DCM
|
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7
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from dodal.devices.eiger import EigerDetector
|
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from dodal.devices.flux import Flux
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9
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from dodal.devices.s4_slit_gaps import S4SlitGaps
|
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from dodal.devices.smargon import Smargon
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from dodal.devices.synchrotron import Synchrotron
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from dodal.devices.undulator import Undulator
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14
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from mx_bluesky.common.utils.log import LOGGER
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from mx_bluesky.hyperion.parameters.constants import CONST
|
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|
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def read_hardware_pre_collection(
|
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undulator: Undulator,
|
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20
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synchrotron: Synchrotron,
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21
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s4_slit_gaps: S4SlitGaps,
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dcm: DCM,
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23
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-
smargon: Smargon,
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24
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-
):
|
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25
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-
LOGGER.info("Reading status of beamline for callbacks, pre collection.")
|
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26
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yield from bps.create(
|
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27
|
-
name=CONST.DESCRIPTORS.HARDWARE_READ_PRE
|
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28
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) # gives name to event *descriptor* document
|
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yield from bps.read(undulator.current_gap)
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|
-
yield from bps.read(synchrotron.synchrotron_mode)
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yield from bps.read(s4_slit_gaps.xgap) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
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32
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yield from bps.read(s4_slit_gaps.ygap) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
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yield from bps.read(smargon.x)
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yield from bps.read(smargon.y)
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yield from bps.read(smargon.z)
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yield from bps.read(dcm.energy_in_kev)
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yield from bps.save()
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39
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40
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def read_hardware_during_collection(
|
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41
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aperture_scatterguard: ApertureScatterguard,
|
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42
|
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attenuator: BinaryFilterAttenuator,
|
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43
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flux: Flux,
|
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44
|
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dcm: DCM,
|
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45
|
-
detector: EigerDetector,
|
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46
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):
|
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47
|
-
LOGGER.info("Reading status of beamline for callbacks, during collection.")
|
|
48
|
-
yield from bps.create(name=CONST.DESCRIPTORS.HARDWARE_READ_DURING)
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49
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yield from bps.read(aperture_scatterguard)
|
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50
|
-
yield from bps.read(attenuator.actual_transmission)
|
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yield from bps.read(flux.flux_reading) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
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52
|
-
yield from bps.read(dcm.energy_in_kev)
|
|
53
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yield from bps.read(detector.bit_depth) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
|
54
|
-
yield from bps.save()
|
|
@@ -1,103 +0,0 @@
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1
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from bluesky import plan_stubs as bps
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2
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-
from bluesky.preprocessors import finalize_wrapper
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from bluesky.utils import make_decorator
|
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4
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from dodal.devices.attenuator.attenuator import BinaryFilterAttenuator
|
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5
|
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from dodal.devices.dcm import DCM
|
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6
|
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from dodal.devices.undulator import Undulator
|
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7
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from dodal.devices.xbpm_feedback import Pause, XBPMFeedback
|
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from mx_bluesky.common.utils.log import LOGGER
|
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def _check_and_pause_feedback(
|
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13
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xbpm_feedback: XBPMFeedback,
|
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14
|
-
attenuator: BinaryFilterAttenuator,
|
|
15
|
-
desired_transmission_fraction: float,
|
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16
|
-
):
|
|
17
|
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"""Checks that the xbpm is in position before then turning it off and setting a new
|
|
18
|
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transmission.
|
|
19
|
-
|
|
20
|
-
Args:
|
|
21
|
-
xbpm_feedback (XBPMFeedback): The XBPM device that is responsible for keeping
|
|
22
|
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the beam in position
|
|
23
|
-
attenuator (BinaryFilterAttenuator): The attenuator used to set transmission
|
|
24
|
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desired_transmission_fraction (float): The desired transmission to set after
|
|
25
|
-
turning XBPM feedback off.
|
|
26
|
-
|
|
27
|
-
"""
|
|
28
|
-
yield from bps.mv(attenuator, 1.0) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
|
29
|
-
LOGGER.info("Waiting for XBPM feedback to be stable")
|
|
30
|
-
yield from bps.trigger(xbpm_feedback, wait=True)
|
|
31
|
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LOGGER.info(
|
|
32
|
-
f"XPBM feedback in position, pausing and setting transmission to {desired_transmission_fraction}"
|
|
33
|
-
)
|
|
34
|
-
yield from bps.mv(xbpm_feedback.pause_feedback, Pause.PAUSE) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
|
35
|
-
yield from bps.mv(attenuator, desired_transmission_fraction) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
def _unpause_xbpm_feedback_and_set_transmission_to_1(
|
|
39
|
-
xbpm_feedback: XBPMFeedback, attenuator: BinaryFilterAttenuator
|
|
40
|
-
):
|
|
41
|
-
"""Turns the XBPM feedback back on and sets transmission to 1 so that it keeps the
|
|
42
|
-
beam aligned whilst not collecting.
|
|
43
|
-
|
|
44
|
-
Args:
|
|
45
|
-
xbpm_feedback (XBPMFeedback): The XBPM device that is responsible for keeping
|
|
46
|
-
the beam in position
|
|
47
|
-
attenuator (BinaryFilterAttenuator): The attenuator used to set transmission
|
|
48
|
-
"""
|
|
49
|
-
yield from bps.mv(xbpm_feedback.pause_feedback, Pause.RUN, attenuator, 1.0) # type: ignore # See: https://github.com/bluesky/bluesky/issues/1809
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
def transmission_and_xbpm_feedback_for_collection_wrapper(
|
|
53
|
-
plan,
|
|
54
|
-
undulator: Undulator,
|
|
55
|
-
xbpm_feedback: XBPMFeedback,
|
|
56
|
-
attenuator: BinaryFilterAttenuator,
|
|
57
|
-
dcm: DCM,
|
|
58
|
-
desired_transmission_fraction: float,
|
|
59
|
-
):
|
|
60
|
-
"""Sets the transmission for the data collection, ensuring the xbpm feedback is valid
|
|
61
|
-
this wrapper should be run around every data collection or movement that may disrupt
|
|
62
|
-
the XBPM feedback.
|
|
63
|
-
|
|
64
|
-
XBPM feedback isn't reliable during collections due to:
|
|
65
|
-
* Objects (e.g. attenuator) crossing the beam can cause large (incorrect) feedback movements
|
|
66
|
-
* Lower transmissions/higher energies are less reliable for the xbpm
|
|
67
|
-
|
|
68
|
-
So we need to keep the transmission at 100% and the feedback on when not collecting
|
|
69
|
-
and then turn it off and set the correct transmission for collection. The feedback
|
|
70
|
-
mostly accounts for slow thermal drift so it is safe to assume that the beam is
|
|
71
|
-
stable during a collection.
|
|
72
|
-
|
|
73
|
-
In the case of a beam dump, undulator gap may not return. Therefore, we check here
|
|
74
|
-
that the undulator gap is correct after XBPM is stable, and before collection.
|
|
75
|
-
|
|
76
|
-
Args:
|
|
77
|
-
plan: The plan performing the data collection
|
|
78
|
-
xbpm_feedback (XBPMFeedback): The XBPM device that is responsible for keeping
|
|
79
|
-
the beam in position
|
|
80
|
-
attenuator (BinaryFilterAttenuator): The attenuator used to set transmission
|
|
81
|
-
desired_transmission_fraction (float): The desired transmission for the collection
|
|
82
|
-
"""
|
|
83
|
-
|
|
84
|
-
def _inner_plan():
|
|
85
|
-
yield from _check_and_pause_feedback(
|
|
86
|
-
xbpm_feedback, attenuator, desired_transmission_fraction
|
|
87
|
-
)
|
|
88
|
-
# Verify Undulator gap is correct, as may not be after a beam dump
|
|
89
|
-
energy_in_kev = yield from bps.rd(dcm.energy_in_kev.user_readback)
|
|
90
|
-
yield from bps.abs_set(undulator, energy_in_kev, wait=True)
|
|
91
|
-
return (yield from plan)
|
|
92
|
-
|
|
93
|
-
return (
|
|
94
|
-
yield from finalize_wrapper(
|
|
95
|
-
_inner_plan(),
|
|
96
|
-
_unpause_xbpm_feedback_and_set_transmission_to_1(xbpm_feedback, attenuator),
|
|
97
|
-
)
|
|
98
|
-
)
|
|
99
|
-
|
|
100
|
-
|
|
101
|
-
transmission_and_xbpm_feedback_for_collection_decorator = make_decorator(
|
|
102
|
-
transmission_and_xbpm_feedback_for_collection_wrapper
|
|
103
|
-
)
|
|
File without changes
|
|
File without changes
|
|
File without changes
|