mustrd 0.2.0__py3-none-any.whl → 0.2.2__py3-none-any.whl

mustrd/namespace.py

@@ -1,125 +1,126 @@
-"""
-MIT License
-
-Copyright (c) 2023 Semantic Partners Ltd
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
-"""
-
-from rdflib import URIRef
-from rdflib.namespace import DefinedNamespace, Namespace
-
-# Namespace for the test specifications
-class MUST(DefinedNamespace):
-    _NS = Namespace("https://mustrd.com/model/")
-    
-    # Specification classes
-    TestSpec: URIRef
-    SelectSparql: URIRef
-    ConstructSparql: URIRef
-    UpdateSparql: URIRef
-    AnzoQueryDrivenUpdateSparql: URIRef
-    AskSparql: URIRef
-    DescribeSparql: URIRef
-
-    # Specification properties
-    given: URIRef
-    when: URIRef
-    then: URIRef
-    dataSource: URIRef
-    file: URIRef
-    fileName: URIRef
-    queryFolder: URIRef
-    queryName: URIRef
-    dataSourceUrl: URIRef
-    queryText: URIRef
-    queryType: URIRef
-    hasStatement: URIRef
-    hasRow: URIRef
-    hasBinding: URIRef
-    variable: URIRef
-    boundValue: URIRef
-    focus:URIRef
-
-    # Specification data sources
-    TableDataset: URIRef
-    StatementsDataset: URIRef
-    FileDataset: URIRef
-    HttpDataset: URIRef
-    TextSparqlSource: URIRef
-    FileSparqlSource: URIRef
-    FolderSparqlSource: URIRef
-    FolderDataset: URIRef
-    EmptyGraph: URIRef
-    EmptyTable: URIRef
-    InheritedDataset: URIRef
-
-    # runner uris
-    fileSource: URIRef
-    loadedFromFile: URIRef
-    specSourceFile: URIRef
-    specFileName: URIRef
-
-    # Triple store config parameters
-    # Anzo
-    AnzoGraphmartDataset: URIRef
-    AnzoQueryBuilderSparqlSource: URIRef
-    AnzoGraphmartStepSparqlSource: URIRef
-    AnzoGraphmartLayerSparqlSource: URIRef
-    AnzoGraphmartQueryDrivenTemplatedStepSparqlSource: URIRef
-    anzoQueryStep: URIRef
-    anzoGraphmartLayer: URIRef
-    
-    graphmart: URIRef
-    layer: URIRef
-
-    
-    # FIXME: There is nothing to do that by default?
-    @classmethod
-    def get_local_name(cls, uri: URIRef):
-        return str(uri).split(cls._NS)[1]
-
-# Namespace for triplestores
-class TRIPLESTORE(DefinedNamespace):
-    _NS = Namespace("https://mustrd.com/triplestore/")
-    RdfLib: URIRef
-    GraphDb: URIRef
-    Anzo: URIRef
-    ExternalTripleStore: URIRef
-    InternalTripleStore: URIRef
-    
-    gqeURI: URIRef
-    inputGraph: URIRef 
-    outputGraph: URIRef # anzo specials?     # Triple store config parameters
-    url: URIRef
-    port: URIRef
-    username: URIRef
-    password: URIRef
-    repository: URIRef
-
-# namespace for pytest_mustrd config
-class MUSTRDTEST(DefinedNamespace):
-    _NS = Namespace("https://mustrd.com/mustrdTest/")
-    MustrdTest: URIRef
-    hasSpecPath: URIRef
-    hasDataPath: URIRef
-    triplestoreSpecPath: URIRef
-    hasPytestPath: URIRef
-    filterOnTripleStore: URIRef
-    
+"""
+MIT License
+
+Copyright (c) 2023 Semantic Partners Ltd
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+"""
+
+from rdflib import URIRef
+from rdflib.namespace import DefinedNamespace, Namespace
+
+
+# Namespace for the test specifications
+class MUST(DefinedNamespace):
+    _NS = Namespace("https://mustrd.com/model/")
+
+    # Specification classes
+    TestSpec: URIRef
+    SelectSparql: URIRef
+    ConstructSparql: URIRef
+    UpdateSparql: URIRef
+    AnzoQueryDrivenUpdateSparql: URIRef
+    AskSparql: URIRef
+    DescribeSparql: URIRef
+
+    # Specification properties
+    given: URIRef
+    when: URIRef
+    then: URIRef
+    dataSource: URIRef
+    file: URIRef
+    fileName: URIRef
+    queryFolder: URIRef
+    queryName: URIRef
+    dataSourceUrl: URIRef
+    queryText: URIRef
+    queryType: URIRef
+    hasStatement: URIRef
+    hasRow: URIRef
+    hasBinding: URIRef
+    variable: URIRef
+    boundValue: URIRef
+    focus: URIRef
+
+    # Specification data sources
+    TableDataset: URIRef
+    StatementsDataset: URIRef
+    FileDataset: URIRef
+    HttpDataset: URIRef
+    TextSparqlSource: URIRef
+    FileSparqlSource: URIRef
+    FolderSparqlSource: URIRef
+    FolderDataset: URIRef
+    EmptyGraph: URIRef
+    EmptyTable: URIRef
+    InheritedDataset: URIRef
+
+    # runner uris
+    fileSource: URIRef
+    loadedFromFile: URIRef
+    specSourceFile: URIRef
+    specFileName: URIRef
+
+    # Triple store config parameters
+    # Anzo
+    AnzoGraphmartDataset: URIRef
+    AnzoQueryBuilderSparqlSource: URIRef
+    AnzoGraphmartStepSparqlSource: URIRef
+    AnzoGraphmartLayerSparqlSource: URIRef
+    AnzoGraphmartQueryDrivenTemplatedStepSparqlSource: URIRef
+    anzoQueryStep: URIRef
+    anzoGraphmartLayer: URIRef
+
+    graphmart: URIRef
+    layer: URIRef
+
+    # FIXME: There is nothing to do that by default?
+    @classmethod
+    def get_local_name(cls, uri: URIRef):
+        return str(uri).split(cls._NS)[1]
+
+
+# Namespace for triplestores
+class TRIPLESTORE(DefinedNamespace):
+    _NS = Namespace("https://mustrd.com/triplestore/")
+    RdfLib: URIRef
+    GraphDb: URIRef
+    Anzo: URIRef
+    ExternalTripleStore: URIRef
+    InternalTripleStore: URIRef
+
+    gqeURI: URIRef
+    inputGraph: URIRef
+    outputGraph: URIRef  # anzo specials?     # Triple store config parameters
+    url: URIRef
+    port: URIRef
+    username: URIRef
+    password: URIRef
+    repository: URIRef
+
+
+# namespace for pytest_mustrd config
+class MUSTRDTEST(DefinedNamespace):
+    _NS = Namespace("https://mustrd.com/mustrdTest/")
+    MustrdTest: URIRef
+    hasSpecPath: URIRef
+    hasDataPath: URIRef
+    triplestoreSpecPath: URIRef
+    hasPytestPath: URIRef
+    filterOnTripleStore: URIRef

mustrd/run.py

@@ -1,106 +1,105 @@
-"""
-MIT License
-
-Copyright (c) 2023 Semantic Partners Ltd
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
-"""
-
-import argparse
-import logger_setup
-import sys
-import os
-from rdflib import Graph
-from .mustrd import get_triple_store_graph, run_specs, get_triple_stores, review_results, validate_specs, get_specs
-from pathlib import Path
-from .namespace import TRIPLESTORE
-from .utils import get_project_root
-import logging 
-log = logger_setup.setup_logger(__name__)
-
-
-def parse_args() -> argparse.Namespace:
-    parser = argparse.ArgumentParser()
-    parser.add_argument("-p", "--put", help="Path under test - required", required=True)
-    parser.add_argument("-v", "--verbose", help="verbose logging", action='store_true')
-    parser.add_argument("-c", "--config", help="Path to triple store configuration", default=None)
-    parser.add_argument("-d", "--data", help="Path to test data", default=None)
-    parser.add_argument("-g", "--given", help="Override path for given files", default=None)
-    parser.add_argument("-w", "--when", help="Override path for when files", default=None)
-    parser.add_argument("-t", "--then", help="Override path for then files", default=None)
-
-    return parser.parse_args()
-
-
-# https://github.com/Semantic-partners/mustrd/issues/108
-def main(argv):
-    #given_path = when_path = then_path = None
-    project_root = get_project_root()
-    run_config = {}
-    args = parse_args()
-    run_config["spec_path"] = Path(args.put)
-    log.info(f"Path under test is { run_config['spec_path']}")
-
-    verbose = args.verbose
-    if verbose:
-        log.info(f"Verbose set")
-        run_config["verbose"] = True
-
-    if args.config:
-        triplestore_spec_path = Path(args.config)
-        log.info(f"Path for triple store configuration is {triplestore_spec_path}")
-        triple_stores = get_triple_stores(get_triple_store_graph(triplestore_spec_path))
-    else:
-        log.info(f"No triple store configuration added, running default configuration")
-        triple_stores = [{'type': TRIPLESTORE.RdfLib}]
-    log.info("Triple Stores: " + str(triple_stores))
-    if args.data:
-        run_config["data_path"] = Path(args.data)
-    else:
-        run_config["data_path"] = Path(args.put)
-    log.info(f"Path for test data folder is {run_config['data_path']}")
-
-    if args.given:
-        run_config["given_path"] = Path(args.given)
-        log.info(f"Path for given folder is {run_config['given_path']}")
-
-    if args.when:
-        run_config["when_path"] = Path(args.when)
-        log.info(f"Path for when folder is {run_config['when_path']}")
-
-    if args.then:
-        run_config["then_path"] = Path(args.then)
-        log.info(f"Path for then folder is {run_config['then_path']}")
-
-    shacl_graph = Graph().parse(Path(os.path.join(project_root, "model/mustrdShapes.ttl")))
-    ont_graph = Graph().parse(Path(os.path.join(project_root, "model/ontology.ttl")))
-
-    valid_spec_uris, spec_graph, invalid_spec_results = \
-        validate_specs(run_config, triple_stores, shacl_graph, ont_graph)
-
-    specs, skipped_spec_results = \
-        get_specs(valid_spec_uris, spec_graph, triple_stores, run_config)
-
-    results = invalid_spec_results + skipped_spec_results + run_specs(specs)
-
-    review_results(results, verbose)
-
-
-if __name__ == "__main__":
-    main(sys.argv[1:])
+"""
+MIT License
+
+Copyright (c) 2023 Semantic Partners Ltd
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+"""
+
+import argparse
+import logger_setup
+import sys
+import os
+from rdflib import Graph
+from .mustrd import get_triple_store_graph, run_specs, get_triple_stores, review_results, validate_specs, get_specs
+from pathlib import Path
+from .namespace import TRIPLESTORE
+from .utils import get_project_root
+log = logger_setup.setup_logger(__name__)
+
+
+def parse_args() -> argparse.Namespace:
+    parser = argparse.ArgumentParser()
+    parser.add_argument("-p", "--put", help="Path under test - required", required=True)
+    parser.add_argument("-v", "--verbose", help="verbose logging", action='store_true')
+    parser.add_argument("-c", "--config", help="Path to triple store configuration", default=None)
+    parser.add_argument("-d", "--data", help="Path to test data", default=None)
+    parser.add_argument("-g", "--given", help="Override path for given files", default=None)
+    parser.add_argument("-w", "--when", help="Override path for when files", default=None)
+    parser.add_argument("-t", "--then", help="Override path for then files", default=None)
+
+    return parser.parse_args()
+
+
+# https://github.com/Semantic-partners/mustrd/issues/108
+def main(argv):
+    # Given_path = when_path = then_path = None
+    project_root = get_project_root()
+    run_config = {}
+    args = parse_args()
+    run_config["spec_path"] = Path(args.put)
+    log.info(f"Path under test is { run_config['spec_path']}")
+
+    verbose = args.verbose
+    if verbose:
+        log.info("Verbose set")
+        run_config["verbose"] = True
+
+    if args.config:
+        triplestore_spec_path = Path(args.config)
+        log.info(f"Path for triple store configuration is {triplestore_spec_path}")
+        triple_stores = get_triple_stores(get_triple_store_graph(triplestore_spec_path))
+    else:
+        log.info("No triple store configuration added, running default configuration")
+        triple_stores = [{'type': TRIPLESTORE.RdfLib}]
+    log.info("Triple Stores: " + str(triple_stores))
+    if args.data:
+        run_config["data_path"] = Path(args.data)
+    else:
+        run_config["data_path"] = Path(args.put)
+    log.info(f"Path for test data folder is {run_config['data_path']}")
+
+    if args.given:
+        run_config["given_path"] = Path(args.given)
+        log.info(f"Path for given folder is {run_config['given_path']}")
+
+    if args.when:
+        run_config["when_path"] = Path(args.when)
+        log.info(f"Path for when folder is {run_config['when_path']}")
+
+    if args.then:
+        run_config["then_path"] = Path(args.then)
+        log.info(f"Path for then folder is {run_config['then_path']}")
+
+    shacl_graph = Graph().parse(Path(os.path.join(project_root, "model/mustrdShapes.ttl")))
+    ont_graph = Graph().parse(Path(os.path.join(project_root, "model/ontology.ttl")))
+
+    valid_spec_uris, spec_graph, invalid_spec_results = \
+        validate_specs(run_config, triple_stores, shacl_graph, ont_graph)
+
+    specs, skipped_spec_results = \
+        get_specs(valid_spec_uris, spec_graph, triple_stores, run_config)
+
+    results = invalid_spec_results + skipped_spec_results + run_specs(specs)
+
+    review_results(results, verbose)
+
+
+if __name__ == "__main__":
+    main(sys.argv[1:])