mustrd 0.2.0__py3-none-any.whl → 0.2.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mustrd/README.adoc +210 -210
- mustrd/TestResult.py +136 -136
- mustrd/logger_setup.py +48 -48
- mustrd/model/catalog-v001.xml +5 -5
- mustrd/model/mustrdShapes.ttl +253 -253
- mustrd/model/mustrdTestShapes.ttl +24 -24
- mustrd/model/ontology.ttl +494 -494
- mustrd/model/test-resources/resources.ttl +60 -60
- mustrd/model/triplestoreOntology.ttl +174 -174
- mustrd/model/triplestoreshapes.ttl +41 -41
- mustrd/mustrd.py +787 -787
- mustrd/mustrdAnzo.py +236 -220
- mustrd/mustrdGraphDb.py +125 -125
- mustrd/mustrdRdfLib.py +56 -56
- mustrd/mustrdTestPlugin.py +327 -328
- mustrd/namespace.py +125 -125
- mustrd/run.py +106 -106
- mustrd/spec_component.py +690 -690
- mustrd/steprunner.py +166 -166
- mustrd/templates/md_ResultList_leaf_template.jinja +18 -18
- mustrd/templates/md_ResultList_template.jinja +8 -8
- mustrd/templates/md_stats_template.jinja +2 -2
- mustrd/test/test_mustrd.py +4 -4
- mustrd/utils.py +38 -38
- {mustrd-0.2.0.dist-info → mustrd-0.2.1.dist-info}/LICENSE +21 -21
- {mustrd-0.2.0.dist-info → mustrd-0.2.1.dist-info}/METADATA +4 -2
- mustrd-0.2.1.dist-info/RECORD +31 -0
- mustrd/mustrdQueryProcessor.py +0 -136
- mustrd-0.2.0.dist-info/RECORD +0 -32
- {mustrd-0.2.0.dist-info → mustrd-0.2.1.dist-info}/WHEEL +0 -0
- {mustrd-0.2.0.dist-info → mustrd-0.2.1.dist-info}/entry_points.txt +0 -0
mustrd/mustrdGraphDb.py
CHANGED
@@ -1,125 +1,125 @@
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"""
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MIT License
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Copyright (c) 2023 Semantic Partners Ltd
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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"""
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import urllib.parse
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import requests
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from rdflib import Graph, Literal
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from requests import ConnectionError, HTTPError, RequestException, Response
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# https://github.com/Semantic-partners/mustrd/issues/72
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def manage_graphdb_response(response: Response) -> str:
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content_string = response.content.decode("utf-8")
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if response.status_code == 200:
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return content_string
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elif response.status_code == 204:
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pass
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elif response.status_code == 401:
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raise HTTPError(f"GraphDB authentication error, status code: {response.status_code}, content: {content_string}")
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elif response.status_code == 406:
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raise HTTPError(f"GraphDB error, status code: {response.status_code}, content: {content_string}")
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else:
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raise RequestException(f"GraphDb error, status code: {response.status_code}, content: {content_string}")
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def upload_given(triple_store: dict, given: Graph):
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if given:
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try:
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graph = "default"
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if triple_store['input_graph']:
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graph = urllib.parse.urlencode({'graph': triple_store['input_graph']})
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url = f"{triple_store['url']}:{triple_store['port']}/repositories/{triple_store['repository']}" \
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f"/rdf-graphs/service?{graph}"
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# graph store PUT drop silently the graph or default and upload the payload
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# https://www.w3.org/TR/sparql11-http-rdf-update/#http-put
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manage_graphdb_response(requests.put(url=url,
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auth=(triple_store['username'], triple_store['password']),
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data=given.serialize(format="ttl"),
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headers={'Content-Type': 'text/turtle'}))
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except ConnectionError:
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raise
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def parse_bindings(bindings: dict = None) -> dict:
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return None if not bindings else {f"${k}": str(v.n3()) for k, v in bindings.items()}
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def execute_select(triple_store: dict, when: str, bindings: dict = None) -> str:
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return post_query(triple_store, when, "application/sparql-results+json", parse_bindings(bindings))
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def execute_construct(triple_store: dict, when: str, bindings: dict = None) -> Graph:
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return Graph().parse(data=post_query(triple_store, when, "text/turtle", parse_bindings(bindings)))
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def execute_update(triple_store: dict, when: str, bindings: dict = None) -> Graph:
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post_update_query(triple_store, when, parse_bindings(bindings))
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return Graph().parse(data=post_query(triple_store, "CONSTRUCT {?s ?p ?o} where { ?s ?p ?o }", 'text/turtle'))
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def post_update_query(triple_store: dict, query: str, params: dict = None) -> str:
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params = add_graph_to_params(params, triple_store["input_graph"])
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try:
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return manage_graphdb_response(requests.post(
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url=f"{triple_store['url']}:{triple_store['port']}/repositories/{triple_store['repository']}/statements",
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data=query,
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params=params,
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auth=(triple_store['username'], triple_store['password']),
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headers={'Content-Type': 'application/sparql-update'}))
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except (ConnectionError, OSError):
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raise
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def post_query(triple_store: dict, query: str, accept: str, params: dict = None) -> str:
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headers = {
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'Content-Type': 'application/sparql-query',
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'Accept': accept
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}
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params = add_graph_to_params(params, triple_store["input_graph"])
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try:
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return manage_graphdb_response(
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requests.post(url=f"{triple_store['url']}:{triple_store['port']}/repositories/{triple_store['repository']}",
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data=query,
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params=params,
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auth=(triple_store['username'], triple_store['password']),
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headers=headers))
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except (ConnectionError, OSError):
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raise
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def add_graph_to_params(params: dict, graph: Literal) -> dict:
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graph = graph or "http://rdf4j.org/schema/rdf4j#nil"
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if params:
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params['default-graph-uri'] = graph
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params['using-graph-uri'] = graph
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params['remove-graph-uri'] = graph
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params['insert-graph-uri'] = graph
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else:
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params = {
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'default-graph-uri': graph,
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'using-graph-uri': graph,
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'remove-graph-uri': graph,
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'insert-graph-uri': graph
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}
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return params
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"""
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MIT License
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Copyright (c) 2023 Semantic Partners Ltd
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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+
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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15
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+
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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"""
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import urllib.parse
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import requests
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from rdflib import Graph, Literal
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from requests import ConnectionError, HTTPError, RequestException, Response
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# https://github.com/Semantic-partners/mustrd/issues/72
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def manage_graphdb_response(response: Response) -> str:
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content_string = response.content.decode("utf-8")
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if response.status_code == 200:
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return content_string
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elif response.status_code == 204:
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pass
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elif response.status_code == 401:
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raise HTTPError(f"GraphDB authentication error, status code: {response.status_code}, content: {content_string}")
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elif response.status_code == 406:
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raise HTTPError(f"GraphDB error, status code: {response.status_code}, content: {content_string}")
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else:
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raise RequestException(f"GraphDb error, status code: {response.status_code}, content: {content_string}")
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def upload_given(triple_store: dict, given: Graph):
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if given:
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try:
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graph = "default"
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if triple_store['input_graph']:
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graph = urllib.parse.urlencode({'graph': triple_store['input_graph']})
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url = f"{triple_store['url']}:{triple_store['port']}/repositories/{triple_store['repository']}" \
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f"/rdf-graphs/service?{graph}"
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# graph store PUT drop silently the graph or default and upload the payload
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# https://www.w3.org/TR/sparql11-http-rdf-update/#http-put
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manage_graphdb_response(requests.put(url=url,
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auth=(triple_store['username'], triple_store['password']),
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data=given.serialize(format="ttl"),
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headers={'Content-Type': 'text/turtle'}))
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except ConnectionError:
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raise
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def parse_bindings(bindings: dict = None) -> dict:
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return None if not bindings else {f"${k}": str(v.n3()) for k, v in bindings.items()}
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def execute_select(triple_store: dict, when: str, bindings: dict = None) -> str:
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return post_query(triple_store, when, "application/sparql-results+json", parse_bindings(bindings))
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def execute_construct(triple_store: dict, when: str, bindings: dict = None) -> Graph:
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return Graph().parse(data=post_query(triple_store, when, "text/turtle", parse_bindings(bindings)))
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def execute_update(triple_store: dict, when: str, bindings: dict = None) -> Graph:
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post_update_query(triple_store, when, parse_bindings(bindings))
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return Graph().parse(data=post_query(triple_store, "CONSTRUCT {?s ?p ?o} where { ?s ?p ?o }", 'text/turtle'))
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def post_update_query(triple_store: dict, query: str, params: dict = None) -> str:
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params = add_graph_to_params(params, triple_store["input_graph"])
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try:
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return manage_graphdb_response(requests.post(
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url=f"{triple_store['url']}:{triple_store['port']}/repositories/{triple_store['repository']}/statements",
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data=query,
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params=params,
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auth=(triple_store['username'], triple_store['password']),
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headers={'Content-Type': 'application/sparql-update'}))
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except (ConnectionError, OSError):
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raise
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def post_query(triple_store: dict, query: str, accept: str, params: dict = None) -> str:
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headers = {
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'Content-Type': 'application/sparql-query',
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'Accept': accept
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}
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params = add_graph_to_params(params, triple_store["input_graph"])
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try:
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return manage_graphdb_response(
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requests.post(url=f"{triple_store['url']}:{triple_store['port']}/repositories/{triple_store['repository']}",
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data=query,
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params=params,
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auth=(triple_store['username'], triple_store['password']),
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headers=headers))
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except (ConnectionError, OSError):
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raise
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def add_graph_to_params(params: dict, graph: Literal) -> dict:
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graph = graph or "http://rdf4j.org/schema/rdf4j#nil"
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if params:
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params['default-graph-uri'] = graph
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params['using-graph-uri'] = graph
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params['remove-graph-uri'] = graph
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params['insert-graph-uri'] = graph
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else:
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params = {
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'default-graph-uri': graph,
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'using-graph-uri': graph,
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'remove-graph-uri': graph,
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'insert-graph-uri': graph
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}
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return params
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mustrd/mustrdRdfLib.py
CHANGED
@@ -1,56 +1,56 @@
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"""
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MIT License
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Copyright (c) 2023 Semantic Partners Ltd
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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-
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The above copyright notice and this permission notice shall be included in all
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-
copies or substantial portions of the Software.
|
15
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-
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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-
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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"""
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from pyparsing import ParseException
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from rdflib import Graph
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from requests import RequestException
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def execute_select(triple_store: dict, given: Graph, when: str, bindings: dict = None) -> str:
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try:
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return given.query(when, initBindings=bindings).serialize(format="json").decode("utf-8")
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except ParseException:
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raise
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except Exception as e:
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raise RequestException(e)
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def execute_construct(triple_store: dict, given: Graph, when: str, bindings: dict = None) -> Graph:
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try:
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return given.query(when, initBindings=bindings).graph
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except ParseException:
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raise
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except Exception as e:
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raise RequestException(e)
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def execute_update(triple_store: dict, given: Graph, when: str, bindings: dict = None) -> Graph:
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try:
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result = given
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result.update(when, initBindings=bindings)
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return result
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except ParseException:
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raise
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except Exception as e:
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raise RequestException(e)
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"""
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MIT License
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Copyright (c) 2023 Semantic Partners Ltd
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Permission is hereby granted, free of charge, to any person obtaining a copy
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|
+
of this software and associated documentation files (the "Software"), to deal
|
8
|
+
in the Software without restriction, including without limitation the rights
|
9
|
+
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
10
|
+
copies of the Software, and to permit persons to whom the Software is
|
11
|
+
furnished to do so, subject to the following conditions:
|
12
|
+
|
13
|
+
The above copyright notice and this permission notice shall be included in all
|
14
|
+
copies or substantial portions of the Software.
|
15
|
+
|
16
|
+
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
17
|
+
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
18
|
+
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
19
|
+
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
20
|
+
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
21
|
+
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
22
|
+
SOFTWARE.
|
23
|
+
"""
|
24
|
+
|
25
|
+
from pyparsing import ParseException
|
26
|
+
from rdflib import Graph
|
27
|
+
from requests import RequestException
|
28
|
+
|
29
|
+
|
30
|
+
def execute_select(triple_store: dict, given: Graph, when: str, bindings: dict = None) -> str:
|
31
|
+
try:
|
32
|
+
return given.query(when, initBindings=bindings).serialize(format="json").decode("utf-8")
|
33
|
+
except ParseException:
|
34
|
+
raise
|
35
|
+
except Exception as e:
|
36
|
+
raise RequestException(e)
|
37
|
+
|
38
|
+
|
39
|
+
def execute_construct(triple_store: dict, given: Graph, when: str, bindings: dict = None) -> Graph:
|
40
|
+
try:
|
41
|
+
return given.query(when, initBindings=bindings).graph
|
42
|
+
except ParseException:
|
43
|
+
raise
|
44
|
+
except Exception as e:
|
45
|
+
raise RequestException(e)
|
46
|
+
|
47
|
+
|
48
|
+
def execute_update(triple_store: dict, given: Graph, when: str, bindings: dict = None) -> Graph:
|
49
|
+
try:
|
50
|
+
result = given
|
51
|
+
result.update(when, initBindings=bindings)
|
52
|
+
return result
|
53
|
+
except ParseException:
|
54
|
+
raise
|
55
|
+
except Exception as e:
|
56
|
+
raise RequestException(e)
|