musica 0.12.2__cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl

musica/mechanism_configuration/emission.py

@@ -0,0 +1,71 @@
+from .utils import _add_other_properties
+from .reactions import ReactionComponentSerializer
+from .species import Species
+from .phase import Phase
+from typing import Optional, Any, Dict, List, Union, Tuple
+from .. import backend
+
+_backend = backend.get_backend()
+_Emission = _backend._mechanism_configuration._Emission
+_ReactionComponent = _backend._mechanism_configuration._ReactionComponent
+
+
+class Emission(_Emission):
+    """
+    A class representing an emission reaction rate constant.
+
+    Attributes:
+        name (str): The name of the emission reaction rate constant.
+        scaling_factor (float): The scaling factor for the emission rate constant.
+        products (List[Union[Species, Tuple[float, Species]]]): A list of products formed in the reaction.
+        gas_phase (Phase): The gas phase in which the reaction occurs.
+        other_properties (Dict[str, Any]): A dictionary of other properties of the emission reaction rate constant.
+    """
+
+    def __init__(
+        self,
+        name: Optional[str] = None,
+        scaling_factor: Optional[float] = None,
+        products: Optional[List[Union[Species, Tuple[float, Species]]]] = None,
+        gas_phase: Optional[Phase] = None,
+        other_properties: Optional[Dict[str, Any]] = None,
+    ):
+        """
+        Initializes the Emission object with the given parameters.
+
+        Args:
+            name (str): The name of the emission reaction rate constant.
+            scaling_factor (float): The scaling factor for the emission rate constant.
+            products (List[Union[Species, Tuple[float, Species]]]): A list of products formed in the reaction.
+            gas_phase (Phase): The gas phase in which the reaction occurs.
+            other_properties (Dict[str, Any]): A dictionary of other properties of the emission reaction rate constant.
+        """
+        super().__init__()
+        self.name = name if name is not None else self.name
+        self.scaling_factor = scaling_factor if scaling_factor is not None else self.scaling_factor
+        self.products = (
+            [
+                (
+                    _ReactionComponent(p.name)
+                    if isinstance(p, Species)
+                    else _ReactionComponent(p[1].name, p[0])
+                )
+                for p in products
+            ]
+            if products is not None
+            else self.products
+        )
+        self.gas_phase = gas_phase.name if gas_phase is not None else self.gas_phase
+        self.other_properties = other_properties if other_properties is not None else self.other_properties
+
+    @staticmethod
+    def serialize(instance) -> Dict:
+        serialize_dict = {
+            "type": "EMISSION",
+            "name": instance.name,
+            "scaling factor": instance.scaling_factor,
+            "products": ReactionComponentSerializer.serialize_list_reaction_components(instance.products),
+            "gas phase": instance.gas_phase,
+        }
+        _add_other_properties(serialize_dict, instance.other_properties)
+        return serialize_dict

musica/mechanism_configuration/first_order_loss.py

@@ -0,0 +1,174 @@
+from .utils import _add_other_properties
+from .reactions import ReactionComponentSerializer
+from .species import Species
+from .phase import Phase
+from typing import Optional, Any, Dict, List, Union, Tuple
+from .. import backend
+
+_backend = backend.get_backend()
+_FirstOrderLoss = _backend._mechanism_configuration._FirstOrderLoss
+_ReactionComponent = _backend._mechanism_configuration._ReactionComponent
+ReactionType = _backend._mechanism_configuration._ReactionType
+
+
+class FirstOrderLoss:
+    """
+    A class representing a first-order loss reaction rate constant.
+
+    Attributes:
+        name (str): The name of the first-order loss reaction rate constant.
+        scaling_factor (float): The scaling factor for the first-order loss rate constant.
+        reactants (List[Union[Species, Tuple[float, Species]]]): A list of reactants involved in the reaction.
+        gas_phase (Phase): The gas phase in which the reaction occurs.
+        other_properties (Dict[str, Any]): A dictionary of other properties of the first-order loss reaction rate constant.
+    """
+
+    def __init__(
+        self,
+        name: Optional[str] = None,
+        scaling_factor: Optional[float] = None,
+        reactants: Optional[List[Union[Species,
+                                       Tuple[float, Species]]]] = None,
+        gas_phase: Optional[Phase] = None,
+        other_properties: Optional[Dict[str, Any]] = None,
+    ):
+        """
+        Initializes the FirstOrderLoss object with the given parameters.
+
+        Args:
+            name (str): The name of the first-order loss reaction rate constant.
+            scaling_factor (float): The scaling factor for the first-order loss rate constant.
+            reactants (List[Union[Species, Tuple[float, Species]]]): A list of reactants involved in the reaction.
+            gas_phase (Phase): The gas phase in which the reaction occurs.
+            other_properties (Dict[str, Any]): A dictionary of other properties of the first-order loss reaction rate constant.
+        """
+        # Create the internal C++ instance
+        self._instance = _FirstOrderLoss()
+
+        # Set properties if provided
+        if name is not None:
+            self.name = name
+        if scaling_factor is not None:
+            self.scaling_factor = scaling_factor
+        if reactants is not None:
+            self.reactants = reactants
+        if gas_phase is not None:
+            self.gas_phase = gas_phase
+        if other_properties is not None:
+            self.other_properties = other_properties
+
+    @property
+    def name(self) -> str:
+        """Get the name."""
+        return self._instance.name
+
+    @name.setter
+    def name(self, value: str):
+        """Set the name."""
+        self._instance.name = value
+
+    @property
+    def scaling_factor(self) -> float:
+        """Get the scaling factor."""
+        return self._instance.scaling_factor
+
+    @scaling_factor.setter
+    def scaling_factor(self, value: float):
+        """Set the scaling factor."""
+        self._instance.scaling_factor = value
+
+    @property
+    def reactants(self) -> List[Union[Species, Tuple[float, Species]]]:
+        """Get the reactants as Python objects."""
+        # Convert from C++ _ReactionComponent objects to Python Species objects
+        result = []
+        for rc in self._instance.reactants:
+            if hasattr(rc, 'coefficient') and rc.coefficient != 1.0:
+                # Create a tuple with coefficient and species
+                species = Species(name=rc.species_name)
+                result.append((rc.coefficient, species))
+            else:
+                # Just the species
+                species = Species(name=rc.species_name)
+                result.append(species)
+        return result
+
+    @reactants.setter
+    def reactants(self, value: List[Union[Species, Tuple[float, Species]]]):
+        """Set the reactants, converting from Python to C++ objects."""
+        cpp_reactants = []
+        for r in value:
+            if isinstance(r, Species):
+                cpp_reactants.append(_ReactionComponent(r.name))
+            elif isinstance(r, tuple) and len(r) == 2:
+                coefficient, species = r
+                cpp_reactants.append(_ReactionComponent(species.name, coefficient))
+            else:
+                raise ValueError(f"Invalid reactant format: {r}")
+        self._instance.reactants = cpp_reactants
+
+    @property
+    def gas_phase(self) -> str:
+        """Get the gas phase name."""
+        return self._instance.gas_phase
+
+    @gas_phase.setter
+    def gas_phase(self, value: Union[Phase, str]):
+        """Set the gas phase."""
+        if isinstance(value, Phase):
+            self._instance.gas_phase = value.name
+        else:
+            self._instance.gas_phase = value
+
+    @property
+    def other_properties(self) -> Dict[str, Any]:
+        """Get the other properties."""
+        return self._instance.other_properties
+
+    @other_properties.setter
+    def other_properties(self, value: Dict[str, Any]):
+        """Set the other properties."""
+        self._instance.other_properties = value
+
+    @property
+    def type(self):
+        """Get the reaction type."""
+        return ReactionType.FirstOrderLoss
+
+    def serialize(self) -> Dict:
+        """
+        Serialize the FirstOrderLoss object to a dictionary using only Python-visible data.
+
+        Returns:
+            Dict: A dictionary representation of the FirstOrderLoss object.
+        """
+        serialize_dict = {
+            "type": "FIRST_ORDER_LOSS",
+            "name": self.name,
+            "scaling factor": self.scaling_factor,
+            "reactants": ReactionComponentSerializer.serialize_list_reaction_components(self._instance.reactants),
+            "gas phase": self.gas_phase,
+        }
+        _add_other_properties(serialize_dict, self.other_properties)
+        return _remove_empty_keys(serialize_dict)
+
+    @staticmethod
+    def serialize_static(instance) -> Dict:
+        """
+        Static serialize method for compatibility with C++ _FirstOrderLoss objects.
+
+        Args:
+            instance: The _FirstOrderLoss instance to serialize.
+
+        Returns:
+            Dict: A dictionary representation of the FirstOrderLoss object.
+        """
+        serialize_dict = {
+            "type": "FIRST_ORDER_LOSS",
+            "name": instance.name,
+            "scaling factor": instance.scaling_factor,
+            "reactants": ReactionComponentSerializer.serialize_list_reaction_components(instance.reactants),
+            "gas phase": instance.gas_phase,
+        }
+        _add_other_properties(serialize_dict, instance.other_properties)
+        return serialize_dict

musica/mechanism_configuration/henrys_law.py

@@ -0,0 +1,44 @@
+from typing import Optional, Any, Dict, Union, Tuple
+from .. import backend
+from .phase import Phase
+from .species import Species
+from .utils import _add_other_properties
+
+_backend = backend.get_backend()
+_HenrysLaw = _backend._mechanism_configuration._HenrysLaw
+_ReactionComponent = _backend._mechanism_configuration._ReactionComponent
+
+
+class HenrysLaw(_HenrysLaw):
+    """
+    A class representing a Henry's law reaction rate constant.
+
+    Attributes:
+        name (str): The name of the Henry's law reaction rate constant.
+        other_properties (Dict[str, Any]): A dictionary of other properties of the Henry's law reaction rate constant.
+    """
+
+    def __init__(
+        self,
+        name: Optional[str] = None,
+        other_properties: Optional[Dict[str, Any]] = None,
+    ):
+        """
+        Initializes the HenrysLaw object with the given parameters.
+
+        Args:
+            name (str): The name of the Henry's law reaction rate constant.
+            other_properties (Dict[str, Any]): A dictionary of other properties of the Henry's law reaction rate constant.
+        """
+        super().__init__()
+        self.name = name if name is not None else self.name
+        self.other_properties = other_properties if other_properties is not None else self.other_properties
+
+    @staticmethod
+    def serialize(instance) -> Dict:
+        serialize_dict = {
+            "type": "HL_PHASE_TRANSFER",
+            "name": instance.name,
+        }
+        _add_other_properties(serialize_dict, instance.other_properties)
+        return serialize_dict

musica/mechanism_configuration/mechanism_configuration.py

@@ -0,0 +1,234 @@
+# Copyright (C) 2025 University Corporation for Atmospheric Research
+# SPDX-License-Identifier: Apache-2.0
+#
+# This file is part of the musica Python package.
+# For more information, see the LICENSE file in the top-level directory of this distribution.
+from .reactions import Reactions, ReactionType
+from .user_defined import UserDefined, _UserDefined
+from .simpol_phase_transfer import SimpolPhaseTransfer, _SimpolPhaseTransfer
+from .henrys_law import HenrysLaw, _HenrysLaw
+from .wet_deposition import WetDeposition, _WetDeposition
+from .aqueous_equilibrium import AqueousEquilibrium, _AqueousEquilibrium
+from .first_order_loss import FirstOrderLoss, _FirstOrderLoss
+from .emission import Emission, _Emission
+from .condensed_phase_photolysis import CondensedPhasePhotolysis, _CondensedPhasePhotolysis
+from .photolysis import Photolysis, _Photolysis
+from .surface import Surface, _Surface
+from .tunneling import Tunneling, _Tunneling
+from .branched import Branched, _Branched
+from .troe import Troe, _Troe
+from .ternary_chemical_activation import TernaryChemicalActivation, _TernaryChemicalActivation
+from .condensed_phase_arrhenius import CondensedPhaseArrhenius, _CondensedPhaseArrhenius
+from .arrhenius import Arrhenius, _Arrhenius
+from .phase import Phase
+from .species import Species
+import os
+import json
+import yaml
+from typing import Optional, Any, Dict, List
+from .. import backend
+
+_backend = backend.get_backend()
+_mc = _backend._mechanism_configuration
+_Mechanism = _mc._Mechanism
+_Version = _mc._Version
+_Parser = _mc._Parser
+
+
+class Version(_Version):
+    """
+    A class representing the version of the mechanism.
+    """
+
+
+class Mechanism(_Mechanism):
+    """
+    A class representing a chemical mechanism.
+
+    Attributes:
+        name (str): The name of the mechanism.
+        reactions (List[Reaction]): A list of reactions in the mechanism.
+        species (List[Species]): A list of species in the mechanism.
+        phases (List[Phase]): A list of phases in the mechanism.
+        version (Version): The version of the mechanism.
+    """
+
+    def __init__(
+        self,
+        name: Optional[str] = None,
+        reactions: Optional[List[Any]] = None,
+        species: Optional[List[Species]] = None,
+        phases: Optional[List[Phase]] = None,
+        version: Optional[Version] = None,
+    ):
+        """
+        Initializes the Mechanism object with the given parameters.
+
+        Args:
+            name (str): The name of the mechanism.
+            reactions (List[]): A list of reactions in the mechanism.
+            species (List[Species]): A list of species in the mechanism.
+            phases (List[Phase]): A list of phases in the mechanism.
+            version (Version): The version of the mechanism.
+        """
+        super().__init__()
+        self.name = name
+        self.species = species if species is not None else []
+        self.phases = phases if phases is not None else []
+        self.reactions = Reactions(
+            reactions=reactions if reactions is not None else [])
+        self.version = version if version is not None else Version()
+
+    def to_dict(self) -> Dict:
+        species_list = []
+        for species in self.species:
+            species_list.append(Species.serialize(species))
+
+        phases_list = []
+        for phase in self.phases:
+            phases_list.append(Phase.serialize(phase))
+
+        reactions_list = []
+        for reaction in self.reactions:
+            if isinstance(reaction, _Arrhenius):
+                # Handle C++ _Arrhenius objects with static serialize call
+                reactions_list.append(Arrhenius.serialize_static(reaction))
+            elif isinstance(reaction, Arrhenius):
+                # Handle Python Arrhenius objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, _Branched):
+                # Handle C++ _Branched objects with static serialize call
+                reactions_list.append(Branched.serialize_static(reaction))
+            elif isinstance(reaction, Branched):
+                # Handle Python Branched objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, (_CondensedPhaseArrhenius, CondensedPhaseArrhenius)):
+                reactions_list.append(
+                    CondensedPhaseArrhenius.serialize_static(reaction))
+            elif isinstance(reaction, (_CondensedPhasePhotolysis, CondensedPhasePhotolysis)):
+                reactions_list.append(
+                    CondensedPhasePhotolysis.serialize(reaction))
+            elif isinstance(reaction, (_Emission, Emission)):
+                reactions_list.append(Emission.serialize(reaction))
+            elif isinstance(reaction, _FirstOrderLoss):
+                # Handle C++ _FirstOrderLoss objects with static serialize call
+                reactions_list.append(FirstOrderLoss.serialize_static(reaction))
+            elif isinstance(reaction, FirstOrderLoss):
+                # Handle Python FirstOrderLoss objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, _SimpolPhaseTransfer):
+                # Handle C++ _SimpolPhaseTransfer objects with static serialize call
+                reactions_list.append(
+                    SimpolPhaseTransfer.serialize_static(reaction))
+            elif isinstance(reaction, SimpolPhaseTransfer):
+                # Handle Python SimpolPhaseTransfer objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, _AqueousEquilibrium):
+                # Handle C++ _AqueousEquilibrium objects with static serialize call
+                reactions_list.append(
+                    AqueousEquilibrium.serialize_static(reaction))
+            elif isinstance(reaction, AqueousEquilibrium):
+                # Handle Python AqueousEquilibrium objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, (_WetDeposition, WetDeposition)):
+                reactions_list.append(WetDeposition.serialize(reaction))
+            elif isinstance(reaction, (_HenrysLaw, HenrysLaw)):
+                reactions_list.append(HenrysLaw.serialize(reaction))
+            elif isinstance(reaction, (_Photolysis, Photolysis)):
+                reactions_list.append(Photolysis.serialize(reaction))
+            elif isinstance(reaction, (_Surface, Surface)):
+                reactions_list.append(Surface.serialize(reaction))
+            elif isinstance(reaction, _Troe):
+                # Handle C++ _Troe objects with static serialize call
+                reactions_list.append(Troe.serialize_static(reaction))
+            elif isinstance(reaction, Troe):
+                # Handle Python Troe objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, _TernaryChemicalActivation):
+                # Handle C++ _TernaryChemicalActivation objects with static serialize call
+                reactions_list.append(TernaryChemicalActivation.serialize_static(reaction))
+            elif isinstance(reaction, TernaryChemicalActivation):
+                # Handle Python TernaryChemicalActivation objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, _Tunneling):
+                # Handle C++ _Tunneling objects with static serialize call
+                reactions_list.append(Tunneling.serialize_static(reaction))
+            elif isinstance(reaction, Tunneling):
+                # Handle Python Tunneling objects with instance serialize call
+                reactions_list.append(reaction.serialize())
+            elif isinstance(reaction, (_UserDefined, UserDefined)):
+                reactions_list.append(UserDefined.serialize(reaction))
+            else:
+                raise TypeError(
+                    f'Reaction type {type(reaction)} is not supported for export.')
+
+        return {
+            "name": self.name,
+            "reactions": reactions_list,
+            "species": species_list,
+            "phases": phases_list,
+            "version": self.version.to_string(),
+        }
+
+    def export(self, file_path: str) -> None:
+        MechanismSerializer.serialize(self, file_path)
+
+
+class Parser(_Parser):
+    """
+    A class for parsing a chemical mechanism.
+    """
+
+
+class MechanismSerializer():
+    """
+    A class for exporting a chemical mechanism.
+    """
+
+    @staticmethod
+    def _convert_cpp_mechanism_to_python(cpp_mechanism: Any) -> Mechanism:
+        """
+        Convert a C++ _Mechanism object to a Python Mechanism object.
+        """
+        reactions_list = []
+        for reaction in cpp_mechanism.reactions:
+            reactions_list.append(reaction)
+
+        python_mechanism = Mechanism(
+            name=cpp_mechanism.name,
+            reactions=reactions_list,
+            species=list(cpp_mechanism.species),
+            phases=list(cpp_mechanism.phases),
+            version=Version() if cpp_mechanism.version is None else cpp_mechanism.version
+        )
+
+        return python_mechanism
+
+    @staticmethod
+    def serialize(mechanism: Mechanism, file_path: str = "./mechanism.json") -> None:
+        if not isinstance(mechanism, (Mechanism, _Mechanism)):
+            raise TypeError(f"Object {mechanism} is not of type Mechanism.")
+
+        directory, file = os.path.split(file_path)
+        if directory:
+            os.makedirs(directory, exist_ok=True)
+
+        if isinstance(mechanism, _Mechanism) and not isinstance(mechanism, Mechanism):
+            mechanism = MechanismSerializer._convert_cpp_mechanism_to_python(
+                mechanism)
+
+        # Now we can use the standard to_dict method
+        dictionary = mechanism.to_dict()
+
+        _, file_ext = os.path.splitext(file)
+        file_ext = file_ext.lower()
+        if file_ext in ['.yaml', '.yml']:
+            with open(file_path, 'w') as file:
+                yaml.dump(dictionary, file)
+        elif '.json' == file_ext:
+            json_str = json.dumps(dictionary, indent=4)
+            with open(file_path, 'w') as file:
+                file.write(json_str)
+        else:
+            raise ValueError(
+                'Allowable write formats are .json, .yaml, and .yml')

musica/mechanism_configuration/phase.py

@@ -0,0 +1,47 @@
+from typing import Optional, Any, Dict, List
+from .. import backend
+from .species import Species
+from .utils import _add_other_properties, _remove_empty_keys
+
+_backend = backend.get_backend()
+_Phase = _backend._mechanism_configuration._Phase
+
+
+class Phase(_Phase):
+    """
+    A class representing a phase in a chemical mechanism.
+
+    Attributes:
+        name (str): The name of the phase.
+        species (List[Species]): A list of species in the phase.
+        other_properties (Dict[str, Any]): A dictionary of other properties of the phase.
+    """
+
+    def __init__(
+        self,
+        name: Optional[str] = None,
+        species: Optional[List[Species]] = None,
+        other_properties: Optional[Dict[str, Any]] = None,
+    ):
+        """
+        Initializes the Phase object with the given parameters.
+
+        Args:
+            name (str): The name of the phase.
+            species (List[Species]): A list of species in the phase.
+            other_properties (Dict[str, Any]): A dictionary of other properties of the phase.
+        """
+        super().__init__()
+        self.name = name if name is not None else self.name
+        self.species = [
+            s.name for s in species] if species is not None else self.species
+        self.other_properties = other_properties if other_properties is not None else self.other_properties
+
+    @staticmethod
+    def serialize(instance):
+        serialize_dict = {
+            "name": instance.name,
+            "species": instance.species,
+        }
+        _add_other_properties(serialize_dict, instance.other_properties)
+        return _remove_empty_keys(serialize_dict)

musica/mechanism_configuration/photolysis.py

@@ -0,0 +1,88 @@
+from .utils import _add_other_properties
+from .reactions import ReactionComponentSerializer
+from .species import Species
+from .phase import Phase
+from typing import Optional, Any, Dict, List, Union, Tuple
+from .. import backend
+
+_backend = backend.get_backend()
+_Photolysis = _backend._mechanism_configuration._Photolysis
+_ReactionComponent = _backend._mechanism_configuration._ReactionComponent
+
+
+class Photolysis(_Photolysis):
+    """
+    A class representing a photolysis reaction rate constant.
+
+    Attributes:
+        name (str): The name of the photolysis reaction rate constant.
+        scaling_factor (float): The scaling factor for the photolysis rate constant.
+        reactants (List[Union[Species, Tuple[float, Species]]]): A list of reactants involved in the reaction.
+        products (List[Union[Species, Tuple[float, Species]]]): A list of products formed in the reaction.
+        gas_phase (Phase): The gas phase in which the reaction occurs.
+        other_properties (Dict[str, Any]): A dictionary of other properties of the photolysis reaction rate constant.
+    """
+
+    def __init__(
+        self,
+        name: Optional[str] = None,
+        scaling_factor: Optional[float] = None,
+        reactants: Optional[List[Union[Species,
+                                       Tuple[float, Species]]]] = None,
+        products: Optional[List[Union[Species, Tuple[float, Species]]]] = None,
+        gas_phase: Optional[Phase] = None,
+        other_properties: Optional[Dict[str, Any]] = None,
+    ):
+        """
+        Initializes the Photolysis object with the given parameters.
+
+        Args:
+            name (str): The name of the photolysis reaction rate constant.
+            scaling_factor (float): The scaling factor for the photolysis rate constant.
+            reactants (List[Union[Species, Tuple[float, Species]]]): A list of reactants involved in the reaction.
+            products (List[Union[Species, Tuple[float, Species]]]): A list of products formed in the reaction.
+            gas_phase (Phase): The gas phase in which the reaction occurs.
+            other_properties (Dict[str, Any]): A dictionary of other properties of the photolysis reaction rate constant.
+        """
+        super().__init__()
+        self.name = name if name is not None else self.name
+        self.scaling_factor = scaling_factor if scaling_factor is not None else self.scaling_factor
+        self.reactants = (
+            [
+                (
+                    _ReactionComponent(r.name)
+                    if isinstance(r, Species)
+                    else _ReactionComponent(r[1].name, r[0])
+                )
+                for r in reactants
+            ]
+            if reactants is not None
+            else self.reactants
+        )
+        self.products = (
+            [
+                (
+                    _ReactionComponent(p.name)
+                    if isinstance(p, Species)
+                    else _ReactionComponent(p[1].name, p[0])
+                )
+                for p in products
+            ]
+            if products is not None
+            else self.products
+        )
+        self.gas_phase = gas_phase.name if gas_phase is not None else self.gas_phase
+        self.other_properties = other_properties if other_properties is not None else self.other_properties
+
+    @staticmethod
+    def serialize(instance) -> Dict:
+        serialize_dict = {
+            "type": "PHOTOLYSIS",
+            "name": instance.name,
+            "scaling factor": instance.scaling_factor,
+            "reactants": ReactionComponentSerializer.serialize_list_reaction_components(instance.reactants),
+            "products": ReactionComponentSerializer.serialize_list_reaction_components(instance.products),
+            "gas phase": instance.gas_phase,
+        }
+        _add_other_properties(serialize_dict, instance.other_properties)
+        return serialize_dict