multipers 2.3.5b1__cp312-cp312-win_amd64.whl → 2.3.5b2__cp312-cp312-win_amd64.whl

multipers/array_api/numpy.py

@@ -22,6 +22,13 @@ unique = _np.unique
 inf = _np.inf
 searchsorted = _np.searchsorted
 LazyTensor = None
+abs = _np.abs
+exp = _np.exp
+
+
+def relu(x):
+    return _np.where(x >= 0, x, 0)
+
 
 # Test keops
 _is_keops_available = None

multipers/array_api/torch.py

@@ -20,6 +20,9 @@ cartesian_product = _t.cartesian_prod
 inf = _t.inf
 searchsorted = _t.searchsorted
 LazyTensor = None
+relu = _t.relu
+abs = _t.abs
+exp = _t.exp
 
 
 _is_keops_available = None

multipers/grids.pyx

@@ -493,3 +493,27 @@ def _push_pts_to_lines(pts, basepoints, directions=None, api=None):
     return out
 
 
+def evaluate_mod_in_grid(mod, grid, box=None):
+    """Given an MMA module, pushes it into the specified grid.
+    Useful for e.g., make it differentiable.
+
+    Input
+    -----
+     - mod: PyModule
+     - grid: Iterable of 1d array, for num_parameters
+    Ouput
+    -----
+    torch-compatible module in the format:
+    (num_degrees) x (num_interval of degree) x ((num_birth, num_parameter), (num_death, num_parameters))
+
+    """
+    (birth_sizes, death_sizes), births, deaths = mod.to_flat_idx(grid)
+    births = evaluate_in_grid(births, grid)
+    deaths = evaluate_in_grid(deaths, grid)
+    diff_mod = tuple(
+        zip(
+            births.split_with_sizes(birth_sizes.tolist()),
+            deaths.split_with_sizes(death_sizes.tolist()),
+        )
+    )
+    return diff_mod

multipers/slicer.pxd

@@ -2013,51 +2013,51 @@ cdef extern from "multiparameter_module_approximation/approximation.h" namespace
 
 import multipers.slicer as mps
 from cython.operator cimport dereference
-cdef inline Module[double] _multiparameter_module_approximation_f64(object slicer, One_critical_filtration[double] direction, double max_error, Box[double] box, bool threshold, bool complete, bool verbose):
+cdef inline Module[float] _multiparameter_module_approximation_f32(object slicer, One_critical_filtration[float] direction, float max_error, Box[float] box, bool threshold, bool complete, bool verbose):
   import multipers.slicer as mps
   cdef intptr_t slicer_ptr = <intptr_t>(slicer.get_ptr())
-  cdef Module[double] mod
+  cdef Module[float] mod
   if False:
     pass
-  elif isinstance(slicer, mps._KSlicer_Matrix0_vine_f64):
+  elif isinstance(slicer, mps._KSlicer_Matrix0_vine_f32):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix0_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix0_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
-  elif isinstance(slicer, mps._KSlicer_Matrix1_vine_f64):
+  elif isinstance(slicer, mps._KSlicer_Matrix1_vine_f32):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix1_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix1_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
-  elif isinstance(slicer, mps._Slicer_Matrix0_vine_f64):
+  elif isinstance(slicer, mps._Slicer_Matrix0_vine_f32):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix0_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix0_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
-  elif isinstance(slicer, mps._Slicer_Matrix1_vine_f64):
+  elif isinstance(slicer, mps._Slicer_Matrix1_vine_f32):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix1_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix1_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
   else:
     raise ValueError(f"Unsupported slicer type {type(slicer)}")
-cdef inline Module[float] _multiparameter_module_approximation_f32(object slicer, One_critical_filtration[float] direction, float max_error, Box[float] box, bool threshold, bool complete, bool verbose):
+cdef inline Module[double] _multiparameter_module_approximation_f64(object slicer, One_critical_filtration[double] direction, double max_error, Box[double] box, bool threshold, bool complete, bool verbose):
   import multipers.slicer as mps
   cdef intptr_t slicer_ptr = <intptr_t>(slicer.get_ptr())
-  cdef Module[float] mod
+  cdef Module[double] mod
   if False:
     pass
-  elif isinstance(slicer, mps._KSlicer_Matrix0_vine_f32):
+  elif isinstance(slicer, mps._KSlicer_Matrix0_vine_f64):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix0_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix0_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
-  elif isinstance(slicer, mps._KSlicer_Matrix1_vine_f32):
+  elif isinstance(slicer, mps._KSlicer_Matrix1_vine_f64):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix1_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix1_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
-  elif isinstance(slicer, mps._Slicer_Matrix0_vine_f32):
+  elif isinstance(slicer, mps._Slicer_Matrix0_vine_f64):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix0_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix0_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
-  elif isinstance(slicer, mps._Slicer_Matrix1_vine_f32):
+  elif isinstance(slicer, mps._Slicer_Matrix1_vine_f64):
     with nogil:
-      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix1_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
+      mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix1_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
     return mod
   else:
     raise ValueError(f"Unsupported slicer type {type(slicer)}")

multipers/slicer.pyx

@@ -20777,7 +20777,7 @@ cdef extern from "gudhi/cubical_to_boundary.h" namespace "":
   void _to_boundary(const vector[unsigned int]&, vector[vector[unsigned int]]&, vector[int]&) except + nogil
   void get_vertices(unsigned int, cset[unsigned int]&, const vector[vector[unsigned int]]&) nogil
 
-def _from_bitmapf32(image, **slicer_kwargs):
+def _from_bitmapi64(image, **slicer_kwargs):
     from multipers import Slicer
     dtype = slicer_kwargs.get("dtype", image.dtype)
     slicer_kwargs["dtype"] = dtype
@@ -20795,9 +20795,9 @@ def _from_bitmapf32(image, **slicer_kwargs):
     cdef cset[unsigned int] vertices
 
     cdef unsigned int num_gens = gen_dims.size()
-    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.float32) - _Slicer._inf_value()
-    cdef float[:,:] F = filtration_values
-    cdef float[:,:] c_img = image.reshape(-1,num_parameters)
+    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.int64) - _Slicer._inf_value()
+    cdef int64_t[:,:] F = filtration_values
+    cdef int64_t[:,:] c_img = image.reshape(-1,num_parameters)
     with nogil:
         for i in range(num_gens):
             # with gil:
@@ -20815,7 +20815,7 @@ def _from_bitmapf32(image, **slicer_kwargs):
             #     print(f"F = {np.asarray(F[i])}")
     slicer = _Slicer(gen_maps, gen_dims, filtration_values)
     return slicer
-def _from_bitmapf64(image, **slicer_kwargs):
+def _from_bitmapf32(image, **slicer_kwargs):
     from multipers import Slicer
     dtype = slicer_kwargs.get("dtype", image.dtype)
     slicer_kwargs["dtype"] = dtype
@@ -20833,9 +20833,9 @@ def _from_bitmapf64(image, **slicer_kwargs):
     cdef cset[unsigned int] vertices
 
     cdef unsigned int num_gens = gen_dims.size()
-    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.float64) - _Slicer._inf_value()
-    cdef double[:,:] F = filtration_values
-    cdef double[:,:] c_img = image.reshape(-1,num_parameters)
+    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.float32) - _Slicer._inf_value()
+    cdef float[:,:] F = filtration_values
+    cdef float[:,:] c_img = image.reshape(-1,num_parameters)
     with nogil:
         for i in range(num_gens):
             # with gil:
@@ -20853,7 +20853,7 @@ def _from_bitmapf64(image, **slicer_kwargs):
             #     print(f"F = {np.asarray(F[i])}")
     slicer = _Slicer(gen_maps, gen_dims, filtration_values)
     return slicer
-def _from_bitmapi64(image, **slicer_kwargs):
+def _from_bitmapi32(image, **slicer_kwargs):
     from multipers import Slicer
     dtype = slicer_kwargs.get("dtype", image.dtype)
     slicer_kwargs["dtype"] = dtype
@@ -20871,9 +20871,9 @@ def _from_bitmapi64(image, **slicer_kwargs):
     cdef cset[unsigned int] vertices
 
     cdef unsigned int num_gens = gen_dims.size()
-    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.int64) - _Slicer._inf_value()
-    cdef int64_t[:,:] F = filtration_values
-    cdef int64_t[:,:] c_img = image.reshape(-1,num_parameters)
+    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.int32) - _Slicer._inf_value()
+    cdef int32_t[:,:] F = filtration_values
+    cdef int32_t[:,:] c_img = image.reshape(-1,num_parameters)
     with nogil:
         for i in range(num_gens):
             # with gil:
@@ -20891,7 +20891,7 @@ def _from_bitmapi64(image, **slicer_kwargs):
             #     print(f"F = {np.asarray(F[i])}")
     slicer = _Slicer(gen_maps, gen_dims, filtration_values)
     return slicer
-def _from_bitmapi32(image, **slicer_kwargs):
+def _from_bitmapf64(image, **slicer_kwargs):
     from multipers import Slicer
     dtype = slicer_kwargs.get("dtype", image.dtype)
     slicer_kwargs["dtype"] = dtype
@@ -20909,9 +20909,9 @@ def _from_bitmapi32(image, **slicer_kwargs):
     cdef cset[unsigned int] vertices
 
     cdef unsigned int num_gens = gen_dims.size()
-    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.int32) - _Slicer._inf_value()
-    cdef int32_t[:,:] F = filtration_values
-    cdef int32_t[:,:] c_img = image.reshape(-1,num_parameters)
+    filtration_values = np.zeros(shape=(num_gens, num_parameters), dtype = np.float64) - _Slicer._inf_value()
+    cdef double[:,:] F = filtration_values
+    cdef double[:,:] c_img = image.reshape(-1,num_parameters)
     with nogil:
         for i in range(num_gens):
             # with gil:
@@ -20932,14 +20932,14 @@ def _from_bitmapi32(image, **slicer_kwargs):
 
 def from_bitmap(img, **kwargs):
     img = np.asarray(img)
-    if img.dtype == np.float32:
-        return _from_bitmapf32(img, **kwargs)
-    if img.dtype == np.float64:
-        return _from_bitmapf64(img, **kwargs)
     if img.dtype == np.int64:
         return _from_bitmapi64(img, **kwargs)
+    if img.dtype == np.float32:
+        return _from_bitmapf32(img, **kwargs)
     if img.dtype == np.int32:
         return _from_bitmapi32(img, **kwargs)
+    if img.dtype == np.float64:
+        return _from_bitmapf64(img, **kwargs)
     raise ValueError(f"Invalid dtype. Got {img.dtype=}, was expecting {available_dtype=}.")
 
 def from_function_delaunay(

{multipers-2.3.5b1.dist-info → multipers-2.3.5b2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: multipers
-Version: 2.3.5b1
+Version: 2.3.5b2
 Summary: Multiparameter Topological Persistence for Machine Learning
 Author-email: David Loiseaux <david.lapous@proton.me>, Hannah Schreiber <hannah.schreiber@inria.fr>
 Maintainer-email: David Loiseaux <david.lapous@proton.me>

{multipers-2.3.5b1.dist-info → multipers-2.3.5b2.dist-info}/RECORD

@@ -5,31 +5,31 @@ multipers/distances.py,sha256=uAZj2GtUQp50OxN2qU7sl2JqsmJ74IG9j5tZapLO2Us,6220
 multipers/filtration_conversions.pxd,sha256=Je7a3F4zS1PQn6Ul1YCXgA6p39X2FouStru-XtN-aOw,10800
 multipers/filtration_conversions.pxd.tp,sha256=_9tUvZVUA7J_RUM3q7BxY48fYgDHCUA7Xhy4nBfLLs0,3309
 multipers/filtrations.pxd,sha256=08ONkZNCjs8Nme8lcD9myPz-K662sA-EDpSwzgC2_ts,9461
-multipers/function_rips.cp312-win_amd64.pyd,sha256=cJCzIC2kO-AT0k1KT4AAPwNOFW7QKT5j3XihvDhwCS0,333312
+multipers/function_rips.cp312-win_amd64.pyd,sha256=B3_LMWNbLoSoxG18OQryCBd_7rwoKQPtI15xYgVN0Mo,333312
 multipers/function_rips.pyx,sha256=j5NjbK3YrAv_2s8YHB1JB0k6m9NC7RQCSFlJe-w_kgE,5252
-multipers/grids.cp312-win_amd64.pyd,sha256=KcpN55xbHDh-1E4ccwosbwS1UyP56rgH-kv9Ba1EQdg,478208
-multipers/grids.pyx,sha256=jZQta9UUEam5841CFo_LFxfGVA2ICiu22nZqRKnFtyo,18745
-multipers/io.cp312-win_amd64.pyd,sha256=91RonC2rkMQjFYruTUd9uUWp9hP8gzKt6t25xecMXhA,220160
+multipers/grids.cp312-win_amd64.pyd,sha256=9Q1Ay_IAMY8LXEsH3h_NpKvX8QFjvm0C-E6lLdAbWDs,482816
+multipers/grids.pyx,sha256=8iHLcwm5f4PXJkt6DS81RgiXgyNp5VF4KayF1vBRV4k,19521
+multipers/io.cp312-win_amd64.pyd,sha256=nivmPeYtt27TAKlJfNDPTsBr8KdWI8tm6eupA-79fso,220160
 multipers/io.pyx,sha256=pQBH_rSqaCZqDSxTLnhlyECP3fLbX2tR_RKJHydHm_0,22210
-multipers/mma_structures.cp312-win_amd64.pyd,sha256=Ti9lCGWd-now2SOjMLoFKIbbzXy_h-qMLFP30S-Ocys,1279488
+multipers/mma_structures.cp312-win_amd64.pyd,sha256=R1D-39JRgQ59bVlwn7YtR6ryugxTRSQVrEgaD6Gw-7M,1279488
 multipers/mma_structures.pxd,sha256=jh1QnQRidt_VK0CK7losQi6rAl_1qG5DNuR23J42pUA,6595
 multipers/mma_structures.pyx,sha256=1FQ_sqkpHHkCyCLLKkR9lUgZKDZFt-YgjnDd8NGmw6Q,109526
 multipers/mma_structures.pyx.tp,sha256=QLo4ZZDnFuWNot771jYkYHc9ZQq6CJIpkRkeRwGi7XA,42297
 multipers/multiparameter_edge_collapse.py,sha256=MFt0eKQQSv2354omeIqOmzASYTKIMsYdxZHFZauQr8g,1229
-multipers/multiparameter_module_approximation.cp312-win_amd64.pyd,sha256=T6IVvD0NGD0XtXQLtHI5D8zdDVAAM7-JrSY0RTMZfsQ,451584
+multipers/multiparameter_module_approximation.cp312-win_amd64.pyd,sha256=SB4ChJPRL6ePU4bvk0Ba25Em8iQ0Ga79H2V-USTCX-A,451584
 multipers/multiparameter_module_approximation.pyx,sha256=wp7la7Z9wBngnfw6WOVddf93mPyXf4HfNT6dKW2Z0r0,9030
 multipers/pickle.py,sha256=YYVt4iHiD16E1x5Yn_4mX6P5P8rKi56pNGjJo5IzPhc,2579
 multipers/plots.py,sha256=jXENhITNIbLcLpIKibn5MXzxaeq8DEr1WLAoEU3fmTQ,15436
-multipers/point_measure.cp312-win_amd64.pyd,sha256=7rLwL9GDRJN3u2kiniqkrPUNYd8dgosZ__dS_rauJMQ,588288
+multipers/point_measure.cp312-win_amd64.pyd,sha256=nIqHPkRfDcrb_Ttanu_c4DYFNEfh2aD7xYg7qI-j6ko,588288
 multipers/point_measure.pyx,sha256=AzlAz1C0TW6jxPllbhMxG38ISlSE7h4U-y0mT7Uzndc,14084
-multipers/simplex_tree_multi.cp312-win_amd64.pyd,sha256=UIB7oiFHxDieJqUikNeu42xw2ufostk-dRy-lZUQlHc,3670528
+multipers/simplex_tree_multi.cp312-win_amd64.pyd,sha256=RPpUV3hgDhueCzFRleS1Qm69D8I-NAlxZbNYb3_7-D0,3670528
 multipers/simplex_tree_multi.pxd,sha256=KBX_vcNgtBjNHThUUOXp0r4HWj3EX1DGa6cX9mDi6aI,6649
 multipers/simplex_tree_multi.pyx,sha256=lzxlJnkgv43N6gZsYthIuoYKT45jaah9ogUdO1nvWBk,506429
 multipers/simplex_tree_multi.pyx.tp,sha256=_UCL4n9P0gdqccJPx05dC6lwZFlP64M4WVX0uu6gTlA,90051
-multipers/slicer.cp312-win_amd64.pyd,sha256=aKki_X1r9VspavlE02Um5ylynxAzV24rX-Rxp5iY9-Q,11928064
-multipers/slicer.pxd,sha256=RB0W089T2sFVJGdD1N9C274_GqLPqPH0Hb2nEj2WEwM,185510
+multipers/slicer.cp312-win_amd64.pyd,sha256=ZK6MqRez_YeJ0PN2mNJvBW3i_hDMuwnfBVURxRmL-cA,11928064
+multipers/slicer.pxd,sha256=9O6kNUijKV1GQZJVLMch39_q6JLAFzWtSeiocauZR9Q,185510
 multipers/slicer.pxd.tp,sha256=z-fdpEJWiDncVCFcwVh5Gr_MtRjIV8ln8xOPmd1B1-s,10250
-multipers/slicer.pyx,sha256=VpNcSM0cudBbliAUPDGjVwn2z1cgShfPzq2JVffswsc,947463
+multipers/slicer.pyx,sha256=0RfFis5KVJltTXV3ffjMV2hegDDa_vFgmVRiYRXwyOM,947463
 multipers/slicer.pyx.tp,sha256=9qgb4CYhZ-hEEF42mLgfbRNbfr5CconsimVnXInDWRQ,47254
 multipers/tbb12.dll,sha256=M6QIBW4AdNhi0lTMy6FcxTPR_BaOYLcQquMZ5YZ6MD8,344576
 multipers/tbbbind_2_5.dll,sha256=Mys6mt1_Yc4-n0XrKLY4BTPD6QwsqSpbiQHrg5Yk0Bo,23552
@@ -38,8 +38,8 @@ multipers/tbbmalloc_proxy.dll,sha256=n_GlUK8IfYnRz0Piuw2mN4HmPHtyBtqDsrqoFkKyCb4
 multipers/tensor.pxd,sha256=MSmaMU0sOP9CHLmg4dym7nOGaI1S4cOdM01TQ9flI54,417
 multipers/test.pyx,sha256=-g7WU-jKrZK8H0c-6eAPsfrApjvTKrUoswVYFu8LoV4,1798
 multipers/array_api/__init__.py,sha256=jyvi7Gzd7Si_imgaodz80fcA-68MikAGk8g79_vj6yo,1545
-multipers/array_api/numpy.py,sha256=5XfqM4_ykFtCsn0Rel0qPceEXyzhu-6ekkbsM_94kM8,2439
-multipers/array_api/torch.py,sha256=Q-KiYRpBenbbqgc6NJMCCSDA7oBCrhlkgNHOt26K5co,2572
+multipers/array_api/numpy.py,sha256=0Ln_jY891Jei_HQlWY9S_1-lLPYYOzXRyZknPO5ZYTc,2518
+multipers/array_api/torch.py,sha256=B5ukw4m2OeHLTLaHSytTKDqdcJ4BwV8nKK3JREJAjuQ,2613
 multipers/data/MOL2.py,sha256=nLZHy2OSFN9Z2uJKsbqWOEG2R7G-uH6dCLHG48UjvR4,15428
 multipers/data/UCR.py,sha256=PuT8l3i26y0goBzIESwdgJAe6YFCyDiWSoxECcP5rhs,798
 multipers/data/__init__.py,sha256=w7uUe4LOHbdbKU4R8MNs7em65wZJN0v5ukoG1otFanQ,24
@@ -178,8 +178,8 @@ multipers/tests/__init__.py,sha256=-7Fj-zFAfBJv18trg0CPglQTmYu_ehySZGqtJzPlN8U,1
 multipers/torch/__init__.py,sha256=OLxIiZ389uCqehpUxBPUI_x1SYu531onc4tiTscAuIw,27
 multipers/torch/diff_grids.py,sha256=2YK-c351tBpj8sfzjf26fbE1l0xlWse7oVVfDHD3zwM,7492
 multipers/torch/rips_density.py,sha256=H-kmSzY8hXhmVn15Oltc71DHs1IUHg5oPRgNyWW8L4Q,11706
-multipers-2.3.5b1.dist-info/licenses/LICENSE,sha256=UsQRnvlo_9wpQS9DNt52GEraERHwK2GIRwuqr2Yv5JI,1071
-multipers-2.3.5b1.dist-info/METADATA,sha256=N55aFbElfgLwOlIfHIzzFlflMkUYg4CcKNP4PMRekHk,9825
-multipers-2.3.5b1.dist-info/WHEEL,sha256=8UP9x9puWI0P1V_d7K2oMTBqfeLNm21CTzZ_Ptr0NXU,101
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