multipers 2.3.0__cp312-cp312-win_amd64.whl → 2.3.2b1__cp312-cp312-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- multipers/_signed_measure_meta.py +71 -65
- multipers/array_api/__init__.py +39 -0
- multipers/array_api/numpy.py +34 -0
- multipers/array_api/torch.py +35 -0
- multipers/distances.py +6 -2
- multipers/{ml/convolutions.py → filtrations/density.py} +67 -13
- multipers/filtrations/filtrations.py +76 -17
- multipers/function_rips.cp312-win_amd64.pyd +0 -0
- multipers/grids.cp312-win_amd64.pyd +0 -0
- multipers/grids.pyx +144 -61
- multipers/gudhi/Simplex_tree_multi_interface.h +36 -1
- multipers/gudhi/gudhi/Multi_persistence/Box.h +3 -0
- multipers/gudhi/gudhi/One_critical_filtration.h +18 -9
- multipers/gudhi/mma_interface_h0.h +1 -1
- multipers/gudhi/mma_interface_matrix.h +10 -1
- multipers/gudhi/naive_merge_tree.h +1 -1
- multipers/gudhi/truc.h +555 -42
- multipers/io.cp312-win_amd64.pyd +0 -0
- multipers/io.pyx +26 -93
- multipers/ml/mma.py +3 -3
- multipers/ml/point_clouds.py +2 -2
- multipers/ml/signed_measures.py +63 -65
- multipers/mma_structures.cp312-win_amd64.pyd +0 -0
- multipers/mma_structures.pxd +2 -1
- multipers/mma_structures.pyx +56 -16
- multipers/mma_structures.pyx.tp +14 -5
- multipers/multiparameter_module_approximation/approximation.h +48 -14
- multipers/multiparameter_module_approximation.cp312-win_amd64.pyd +0 -0
- multipers/multiparameter_module_approximation.pyx +25 -7
- multipers/plots.py +2 -1
- multipers/point_measure.cp312-win_amd64.pyd +0 -0
- multipers/point_measure.pyx +6 -2
- multipers/simplex_tree_multi.cp312-win_amd64.pyd +0 -0
- multipers/simplex_tree_multi.pxd +1 -0
- multipers/simplex_tree_multi.pyx +584 -142
- multipers/simplex_tree_multi.pyx.tp +80 -23
- multipers/slicer.cp312-win_amd64.pyd +0 -0
- multipers/slicer.pxd +799 -197
- multipers/slicer.pxd.tp +24 -5
- multipers/slicer.pyx +5654 -1427
- multipers/slicer.pyx.tp +208 -48
- multipers/tbb12.dll +0 -0
- multipers/tbbbind_2_5.dll +0 -0
- multipers/tbbmalloc.dll +0 -0
- multipers/tbbmalloc_proxy.dll +0 -0
- multipers/tensor/tensor.h +1 -1
- multipers/tests/__init__.py +9 -4
- multipers/torch/diff_grids.py +30 -7
- multipers/torch/rips_density.py +1 -1
- {multipers-2.3.0.dist-info → multipers-2.3.2b1.dist-info}/METADATA +4 -25
- {multipers-2.3.0.dist-info → multipers-2.3.2b1.dist-info}/RECORD +54 -51
- {multipers-2.3.0.dist-info → multipers-2.3.2b1.dist-info}/WHEEL +1 -1
- {multipers-2.3.0.dist-info → multipers-2.3.2b1.dist-info/licenses}/LICENSE +0 -0
- {multipers-2.3.0.dist-info → multipers-2.3.2b1.dist-info}/top_level.txt +0 -0
multipers/slicer.pxd
CHANGED
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@@ -34,7 +34,14 @@ cdef extern from "Persistence_slices_interface.h":
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C_KSlicer_Matrix0_vine_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int32_t]]&)
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C_KSlicer_Matrix0_vine_i32& operator=(const C_KSlicer_Matrix0_vine_i32&)
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pair[C_KSlicer_Matrix0_vine_i32, vector[unsigned int]] colexical_rearange() except + nogil
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C_KSlicer_Matrix0_vine_i32 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
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void push_to(const Line[int32_t]&) nogil
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void set_one_filtration(const vector[int32_t]&) nogil
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int prune_above_dimension(int) except + nogil
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pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
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vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
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vector[int] get_dimensions() nogil
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int get_dimension(int i) nogil
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vector[vector[uint]] get_boundaries() nogil
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void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
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vector[Multi_critical_filtration[int32_t]]& get_filtrations() nogil
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void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
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C_KSlicer_Matrix0_vine_i32 projective_cover_kernel(int dim) except + nogil
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#------------------------------------------------------------------------------
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cdef extern from "Persistence_slices_interface.h":
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cdef cppclass C_KSlicer_Matrix1_vine_i32 "TrucPythonInterface<BackendsEnum::Matrix,true,true,int32_t,Available_columns::
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cdef cppclass C_KSlicer_Matrix1_vine_i32 "TrucPythonInterface<BackendsEnum::Matrix,true,true,int32_t,Available_columns::NAIVE_VECTOR>":
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ctypedef int32_t value_type
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C_KSlicer_Matrix1_vine_i32()
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C_KSlicer_Matrix1_vine_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int32_t]]&)
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C_KSlicer_Matrix1_vine_i32& operator=(const C_KSlicer_Matrix1_vine_i32&)
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pair[C_KSlicer_Matrix1_vine_i32, vector[unsigned int]] colexical_rearange() except + nogil
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C_KSlicer_Matrix1_vine_i32 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
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void push_to(const Line[int32_t]&) nogil
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void set_one_filtration(const vector[int32_t]&) nogil
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int prune_above_dimension(int) except + nogil
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pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
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vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
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vector[int] get_dimensions() nogil
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int get_dimension(int i) nogil
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vector[vector[uint]] get_boundaries() nogil
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void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
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vector[Multi_critical_filtration[int32_t]]& get_filtrations() nogil
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void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
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C_KSlicer_Matrix1_vine_i32 projective_cover_kernel(int dim) except + nogil
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#------------------------------------------------------------------------------
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cdef extern from "Persistence_slices_interface.h":
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C_KSlicer_Matrix0_vine_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int64_t]]&)
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C_KSlicer_Matrix0_vine_i64& operator=(const C_KSlicer_Matrix0_vine_i64&)
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pair[C_KSlicer_Matrix0_vine_i64, vector[unsigned int]] colexical_rearange() except + nogil
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C_KSlicer_Matrix0_vine_i64 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
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void push_to(const Line[int64_t]&) nogil
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void set_one_filtration(const vector[int64_t]&) nogil
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int prune_above_dimension(int) except + nogil
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pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
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vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
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vector[int] get_dimensions() nogil
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int get_dimension(int i) nogil
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void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
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vector[Multi_critical_filtration[int64_t]]& get_filtrations() nogil
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void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
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C_KSlicer_Matrix0_vine_i64 projective_cover_kernel(int dim) except + nogil
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#------------------------------------------------------------------------------
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cdef cppclass C_KSlicer_Matrix1_vine_i64 "TrucPythonInterface<BackendsEnum::Matrix,true,true,int64_t,Available_columns::
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cdef cppclass C_KSlicer_Matrix1_vine_i64 "TrucPythonInterface<BackendsEnum::Matrix,true,true,int64_t,Available_columns::NAIVE_VECTOR>":
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ctypedef int64_t value_type
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C_KSlicer_Matrix1_vine_i64()
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C_KSlicer_Matrix1_vine_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int64_t]]&)
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C_KSlicer_Matrix1_vine_i64& operator=(const C_KSlicer_Matrix1_vine_i64&)
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pair[C_KSlicer_Matrix1_vine_i64, vector[unsigned int]] colexical_rearange() except + nogil
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C_KSlicer_Matrix1_vine_i64 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
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void push_to(const Line[int64_t]&) nogil
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void set_one_filtration(const vector[int64_t]&) nogil
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int prune_above_dimension(int) except + nogil
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pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
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vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
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int get_dimension(int i) nogil
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vector[vector[uint]] get_boundaries() nogil
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void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
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vector[Multi_critical_filtration[int64_t]]& get_filtrations() nogil
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void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
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vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
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#------------------------------------------------------------------------------
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C_KSlicer_Matrix0_vine_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[float]]&)
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C_KSlicer_Matrix0_vine_f32& operator=(const C_KSlicer_Matrix0_vine_f32&)
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pair[C_KSlicer_Matrix0_vine_f32, vector[unsigned int]] colexical_rearange() except + nogil
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C_KSlicer_Matrix0_vine_f32 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[float, float]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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void push_to(const Line[float]&) nogil
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int prune_above_dimension(int) except + nogil
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pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
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void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
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vector[Multi_critical_filtration[float]]& get_filtrations() nogil
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void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
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vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
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vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
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vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
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cdef cppclass C_KSlicer_Matrix1_vine_f32 "TrucPythonInterface<BackendsEnum::Matrix,true,true,float,Available_columns::
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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void push_to(const Line[double]&) nogil
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vector[One_critical_filtration[double]] get_filtration_values() nogil
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void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
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C_KSlicer_Matrix0_vine_f64 projective_cover_kernel(int dim) except + nogil
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#------------------------------------------------------------------------------
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cdef cppclass C_KSlicer_Matrix1_vine_f64 "TrucPythonInterface<BackendsEnum::Matrix,true,true,double,Available_columns::
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cdef cppclass C_KSlicer_Matrix1_vine_f64 "TrucPythonInterface<BackendsEnum::Matrix,true,true,double,Available_columns::NAIVE_VECTOR>":
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ctypedef double value_type
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C_KSlicer_Matrix1_vine_f64()
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@@ -314,7 +391,14 @@ cdef extern from "Persistence_slices_interface.h":
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C_KSlicer_Matrix1_vine_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[double]]&)
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C_KSlicer_Matrix1_vine_f64& operator=(const C_KSlicer_Matrix1_vine_f64&)
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pair[C_KSlicer_Matrix1_vine_f64, vector[unsigned int]] colexical_rearange() except + nogil
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C_KSlicer_Matrix1_vine_f64 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[double, double]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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void push_to(const Line[double]&) nogil
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int prune_above_dimension(int) except + nogil
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pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
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vector[One_critical_filtration[double]] get_filtration_values() nogil
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vector[int] get_dimensions() nogil
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int get_dimension(int i) nogil
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vector[vector[uint]] get_boundaries() nogil
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void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
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vector[Multi_critical_filtration[double]]& get_filtrations() nogil
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void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
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vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
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#------------------------------------------------------------------------------
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C_Slicer_Matrix0_vine_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int32_t]]&)
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C_Slicer_Matrix0_vine_i32& operator=(const C_Slicer_Matrix0_vine_i32&)
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pair[C_Slicer_Matrix0_vine_i32, vector[unsigned int]] colexical_rearange() except + nogil
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C_Slicer_Matrix0_vine_i32 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
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void push_to(const Line[int32_t]&) nogil
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void set_one_filtration(const vector[int32_t]&) nogil
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int prune_above_dimension(int) except + nogil
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@@ -369,6 +464,7 @@ cdef extern from "Persistence_slices_interface.h":
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vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
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vector[int] get_dimensions() nogil
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int get_dimension(int i) nogil
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void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
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@@ -381,12 +477,15 @@ cdef extern from "Persistence_slices_interface.h":
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void build_from_scc_file(const string&, bool, bool, int) except + nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
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+
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C_Slicer_Matrix0_vine_i32 projective_cover_kernel(int dim) except + nogil
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#------------------------------------------------------------------------------
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cdef extern from "Persistence_slices_interface.h":
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cdef cppclass C_Slicer_Matrix1_vine_i32 "TrucPythonInterface<BackendsEnum::Matrix,true,false,int32_t,Available_columns::
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+
cdef cppclass C_Slicer_Matrix1_vine_i32 "TrucPythonInterface<BackendsEnum::Matrix,true,false,int32_t,Available_columns::NAIVE_VECTOR>":
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ctypedef int32_t value_type
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C_Slicer_Matrix1_vine_i32()
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@@ -394,7 +493,14 @@ cdef extern from "Persistence_slices_interface.h":
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C_Slicer_Matrix1_vine_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int32_t]]&)
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C_Slicer_Matrix1_vine_i32& operator=(const C_Slicer_Matrix1_vine_i32&)
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pair[C_Slicer_Matrix1_vine_i32, vector[unsigned int]] colexical_rearange() except + nogil
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C_Slicer_Matrix1_vine_i32 permute(const vector[unsigned int]&) except + nogil
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vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
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void push_to(const Line[int32_t]&) nogil
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void set_one_filtration(const vector[int32_t]&) nogil
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int prune_above_dimension(int) except + nogil
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@@ -409,6 +515,7 @@ cdef extern from "Persistence_slices_interface.h":
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pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
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vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
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vector[int] get_dimensions() nogil
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int get_dimension(int i) nogil
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vector[vector[uint]] get_boundaries() nogil
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void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
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vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
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@@ -421,8 +528,11 @@ cdef extern from "Persistence_slices_interface.h":
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void build_from_scc_file(const string&, bool, bool, int) except + nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
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vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
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531
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+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
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532
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+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
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533
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+
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534
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+
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+
C_Slicer_Matrix1_vine_i32 projective_cover_kernel(int dim) except + nogil
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536
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#------------------------------------------------------------------------------
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538
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cdef extern from "Persistence_slices_interface.h":
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@@ -434,7 +544,14 @@ cdef extern from "Persistence_slices_interface.h":
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C_Slicer_Matrix0_vine_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int64_t]]&)
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436
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C_Slicer_Matrix0_vine_i64& operator=(const C_Slicer_Matrix0_vine_i64&)
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+
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548
|
+
pair[C_Slicer_Matrix0_vine_i64, vector[unsigned int]] colexical_rearange() except + nogil
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+
C_Slicer_Matrix0_vine_i64 permute(const vector[unsigned int]&) except + nogil
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550
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+
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437
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vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
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vector[vector[pair[int,int]]] get_barcode_idx() nogil
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+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
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554
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+
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438
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void push_to(const Line[int64_t]&) nogil
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void set_one_filtration(const vector[int64_t]&) nogil
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int prune_above_dimension(int) except + nogil
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@@ -449,6 +566,7 @@ cdef extern from "Persistence_slices_interface.h":
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pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
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450
567
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vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
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451
568
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vector[int] get_dimensions() nogil
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569
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+
int get_dimension(int i) nogil
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452
570
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vector[vector[uint]] get_boundaries() nogil
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453
571
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void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
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454
572
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vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
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@@ -461,12 +579,15 @@ cdef extern from "Persistence_slices_interface.h":
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461
579
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void build_from_scc_file(const string&, bool, bool, int) except + nogil
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462
580
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463
581
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464
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-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
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465
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-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
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582
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+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
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583
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+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
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584
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+
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585
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+
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586
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+
C_Slicer_Matrix0_vine_i64 projective_cover_kernel(int dim) except + nogil
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466
587
|
|
|
467
588
|
#------------------------------------------------------------------------------
|
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468
589
|
cdef extern from "Persistence_slices_interface.h":
|
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469
|
-
cdef cppclass C_Slicer_Matrix1_vine_i64 "TrucPythonInterface<BackendsEnum::Matrix,true,false,int64_t,Available_columns::
|
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590
|
+
cdef cppclass C_Slicer_Matrix1_vine_i64 "TrucPythonInterface<BackendsEnum::Matrix,true,false,int64_t,Available_columns::NAIVE_VECTOR>":
|
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470
591
|
ctypedef int64_t value_type
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471
592
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472
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C_Slicer_Matrix1_vine_i64()
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@@ -474,7 +595,14 @@ cdef extern from "Persistence_slices_interface.h":
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474
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C_Slicer_Matrix1_vine_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int64_t]]&)
|
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475
596
|
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476
597
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C_Slicer_Matrix1_vine_i64& operator=(const C_Slicer_Matrix1_vine_i64&)
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598
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+
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599
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+
pair[C_Slicer_Matrix1_vine_i64, vector[unsigned int]] colexical_rearange() except + nogil
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600
|
+
C_Slicer_Matrix1_vine_i64 permute(const vector[unsigned int]&) except + nogil
|
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601
|
+
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477
602
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
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603
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+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
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604
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+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
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605
|
+
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478
606
|
void push_to(const Line[int64_t]&) nogil
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479
607
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void set_one_filtration(const vector[int64_t]&) nogil
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480
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int prune_above_dimension(int) except + nogil
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@@ -489,6 +617,7 @@ cdef extern from "Persistence_slices_interface.h":
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489
617
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pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
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490
618
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
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491
619
|
vector[int] get_dimensions() nogil
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620
|
+
int get_dimension(int i) nogil
|
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492
621
|
vector[vector[uint]] get_boundaries() nogil
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493
622
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
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494
623
|
vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -501,8 +630,11 @@ cdef extern from "Persistence_slices_interface.h":
|
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501
630
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
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502
631
|
|
|
503
632
|
|
|
504
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
505
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
633
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
634
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
635
|
+
|
|
636
|
+
|
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637
|
+
C_Slicer_Matrix1_vine_i64 projective_cover_kernel(int dim) except + nogil
|
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506
638
|
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507
639
|
#------------------------------------------------------------------------------
|
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508
640
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -514,7 +646,14 @@ cdef extern from "Persistence_slices_interface.h":
|
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514
646
|
C_Slicer_Matrix0_vine_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[float]]&)
|
|
515
647
|
|
|
516
648
|
C_Slicer_Matrix0_vine_f32& operator=(const C_Slicer_Matrix0_vine_f32&)
|
|
649
|
+
|
|
650
|
+
pair[C_Slicer_Matrix0_vine_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
651
|
+
C_Slicer_Matrix0_vine_f32 permute(const vector[unsigned int]&) except + nogil
|
|
652
|
+
|
|
517
653
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
654
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
655
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
656
|
+
|
|
518
657
|
void push_to(const Line[float]&) nogil
|
|
519
658
|
void set_one_filtration(const vector[float]&) nogil
|
|
520
659
|
int prune_above_dimension(int) except + nogil
|
|
@@ -529,6 +668,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
529
668
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
530
669
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
531
670
|
vector[int] get_dimensions() nogil
|
|
671
|
+
int get_dimension(int i) nogil
|
|
532
672
|
vector[vector[uint]] get_boundaries() nogil
|
|
533
673
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
534
674
|
vector[One_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -541,12 +681,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
541
681
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
542
682
|
|
|
543
683
|
|
|
544
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
545
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
684
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
685
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
686
|
+
|
|
687
|
+
|
|
688
|
+
C_Slicer_Matrix0_vine_f32 projective_cover_kernel(int dim) except + nogil
|
|
546
689
|
|
|
547
690
|
#------------------------------------------------------------------------------
|
|
548
691
|
cdef extern from "Persistence_slices_interface.h":
|
|
549
|
-
cdef cppclass C_Slicer_Matrix1_vine_f32 "TrucPythonInterface<BackendsEnum::Matrix,true,false,float,Available_columns::
|
|
692
|
+
cdef cppclass C_Slicer_Matrix1_vine_f32 "TrucPythonInterface<BackendsEnum::Matrix,true,false,float,Available_columns::NAIVE_VECTOR>":
|
|
550
693
|
ctypedef float value_type
|
|
551
694
|
|
|
552
695
|
C_Slicer_Matrix1_vine_f32()
|
|
@@ -554,7 +697,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
554
697
|
C_Slicer_Matrix1_vine_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[float]]&)
|
|
555
698
|
|
|
556
699
|
C_Slicer_Matrix1_vine_f32& operator=(const C_Slicer_Matrix1_vine_f32&)
|
|
700
|
+
|
|
701
|
+
pair[C_Slicer_Matrix1_vine_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
702
|
+
C_Slicer_Matrix1_vine_f32 permute(const vector[unsigned int]&) except + nogil
|
|
703
|
+
|
|
557
704
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
705
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
706
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
707
|
+
|
|
558
708
|
void push_to(const Line[float]&) nogil
|
|
559
709
|
void set_one_filtration(const vector[float]&) nogil
|
|
560
710
|
int prune_above_dimension(int) except + nogil
|
|
@@ -569,6 +719,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
569
719
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
570
720
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
571
721
|
vector[int] get_dimensions() nogil
|
|
722
|
+
int get_dimension(int i) nogil
|
|
572
723
|
vector[vector[uint]] get_boundaries() nogil
|
|
573
724
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
574
725
|
vector[One_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -581,8 +732,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
581
732
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
582
733
|
|
|
583
734
|
|
|
584
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
585
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
735
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
736
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
737
|
+
|
|
738
|
+
|
|
739
|
+
C_Slicer_Matrix1_vine_f32 projective_cover_kernel(int dim) except + nogil
|
|
586
740
|
|
|
587
741
|
#------------------------------------------------------------------------------
|
|
588
742
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -594,7 +748,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
594
748
|
C_Slicer_Matrix0_vine_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[double]]&)
|
|
595
749
|
|
|
596
750
|
C_Slicer_Matrix0_vine_f64& operator=(const C_Slicer_Matrix0_vine_f64&)
|
|
751
|
+
|
|
752
|
+
pair[C_Slicer_Matrix0_vine_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
753
|
+
C_Slicer_Matrix0_vine_f64 permute(const vector[unsigned int]&) except + nogil
|
|
754
|
+
|
|
597
755
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
756
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
757
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
758
|
+
|
|
598
759
|
void push_to(const Line[double]&) nogil
|
|
599
760
|
void set_one_filtration(const vector[double]&) nogil
|
|
600
761
|
int prune_above_dimension(int) except + nogil
|
|
@@ -609,6 +770,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
609
770
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
610
771
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
611
772
|
vector[int] get_dimensions() nogil
|
|
773
|
+
int get_dimension(int i) nogil
|
|
612
774
|
vector[vector[uint]] get_boundaries() nogil
|
|
613
775
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
614
776
|
vector[One_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -621,12 +783,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
621
783
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
622
784
|
|
|
623
785
|
|
|
624
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
625
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
786
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
787
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
788
|
+
|
|
789
|
+
|
|
790
|
+
C_Slicer_Matrix0_vine_f64 projective_cover_kernel(int dim) except + nogil
|
|
626
791
|
|
|
627
792
|
#------------------------------------------------------------------------------
|
|
628
793
|
cdef extern from "Persistence_slices_interface.h":
|
|
629
|
-
cdef cppclass C_Slicer_Matrix1_vine_f64 "TrucPythonInterface<BackendsEnum::Matrix,true,false,double,Available_columns::
|
|
794
|
+
cdef cppclass C_Slicer_Matrix1_vine_f64 "TrucPythonInterface<BackendsEnum::Matrix,true,false,double,Available_columns::NAIVE_VECTOR>":
|
|
630
795
|
ctypedef double value_type
|
|
631
796
|
|
|
632
797
|
C_Slicer_Matrix1_vine_f64()
|
|
@@ -634,7 +799,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
634
799
|
C_Slicer_Matrix1_vine_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[double]]&)
|
|
635
800
|
|
|
636
801
|
C_Slicer_Matrix1_vine_f64& operator=(const C_Slicer_Matrix1_vine_f64&)
|
|
802
|
+
|
|
803
|
+
pair[C_Slicer_Matrix1_vine_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
804
|
+
C_Slicer_Matrix1_vine_f64 permute(const vector[unsigned int]&) except + nogil
|
|
805
|
+
|
|
637
806
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
807
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
808
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
809
|
+
|
|
638
810
|
void push_to(const Line[double]&) nogil
|
|
639
811
|
void set_one_filtration(const vector[double]&) nogil
|
|
640
812
|
int prune_above_dimension(int) except + nogil
|
|
@@ -649,6 +821,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
649
821
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
650
822
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
651
823
|
vector[int] get_dimensions() nogil
|
|
824
|
+
int get_dimension(int i) nogil
|
|
652
825
|
vector[vector[uint]] get_boundaries() nogil
|
|
653
826
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
654
827
|
vector[One_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -661,8 +834,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
661
834
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
662
835
|
|
|
663
836
|
|
|
664
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
665
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
837
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
838
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
839
|
+
|
|
840
|
+
|
|
841
|
+
C_Slicer_Matrix1_vine_f64 projective_cover_kernel(int dim) except + nogil
|
|
666
842
|
|
|
667
843
|
#------------------------------------------------------------------------------
|
|
668
844
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -674,7 +850,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
674
850
|
C_KSlicer_Matrix0_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int32_t]]&)
|
|
675
851
|
|
|
676
852
|
C_KSlicer_Matrix0_i32& operator=(const C_KSlicer_Matrix0_i32&)
|
|
853
|
+
|
|
854
|
+
pair[C_KSlicer_Matrix0_i32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
855
|
+
C_KSlicer_Matrix0_i32 permute(const vector[unsigned int]&) except + nogil
|
|
856
|
+
|
|
677
857
|
vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
|
|
858
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
859
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
|
|
860
|
+
|
|
678
861
|
void push_to(const Line[int32_t]&) nogil
|
|
679
862
|
void set_one_filtration(const vector[int32_t]&) nogil
|
|
680
863
|
int prune_above_dimension(int) except + nogil
|
|
@@ -689,6 +872,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
689
872
|
pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
|
|
690
873
|
vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
|
|
691
874
|
vector[int] get_dimensions() nogil
|
|
875
|
+
int get_dimension(int i) nogil
|
|
692
876
|
vector[vector[uint]] get_boundaries() nogil
|
|
693
877
|
void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
|
|
694
878
|
vector[Multi_critical_filtration[int32_t]]& get_filtrations() nogil
|
|
@@ -698,12 +882,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
698
882
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
699
883
|
|
|
700
884
|
|
|
701
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
|
|
702
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
|
|
885
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
|
|
886
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
|
|
887
|
+
|
|
888
|
+
|
|
889
|
+
C_KSlicer_Matrix0_i32 projective_cover_kernel(int dim) except + nogil
|
|
703
890
|
|
|
704
891
|
#------------------------------------------------------------------------------
|
|
705
892
|
cdef extern from "Persistence_slices_interface.h":
|
|
706
|
-
cdef cppclass C_KSlicer_Matrix1_i32 "TrucPythonInterface<BackendsEnum::Matrix,false,true,int32_t,Available_columns::
|
|
893
|
+
cdef cppclass C_KSlicer_Matrix1_i32 "TrucPythonInterface<BackendsEnum::Matrix,false,true,int32_t,Available_columns::NAIVE_VECTOR>":
|
|
707
894
|
ctypedef int32_t value_type
|
|
708
895
|
|
|
709
896
|
C_KSlicer_Matrix1_i32()
|
|
@@ -711,7 +898,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
711
898
|
C_KSlicer_Matrix1_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int32_t]]&)
|
|
712
899
|
|
|
713
900
|
C_KSlicer_Matrix1_i32& operator=(const C_KSlicer_Matrix1_i32&)
|
|
901
|
+
|
|
902
|
+
pair[C_KSlicer_Matrix1_i32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
903
|
+
C_KSlicer_Matrix1_i32 permute(const vector[unsigned int]&) except + nogil
|
|
904
|
+
|
|
714
905
|
vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
|
|
906
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
907
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
|
|
908
|
+
|
|
715
909
|
void push_to(const Line[int32_t]&) nogil
|
|
716
910
|
void set_one_filtration(const vector[int32_t]&) nogil
|
|
717
911
|
int prune_above_dimension(int) except + nogil
|
|
@@ -726,6 +920,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
726
920
|
pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
|
|
727
921
|
vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
|
|
728
922
|
vector[int] get_dimensions() nogil
|
|
923
|
+
int get_dimension(int i) nogil
|
|
729
924
|
vector[vector[uint]] get_boundaries() nogil
|
|
730
925
|
void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
|
|
731
926
|
vector[Multi_critical_filtration[int32_t]]& get_filtrations() nogil
|
|
@@ -735,8 +930,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
735
930
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
736
931
|
|
|
737
932
|
|
|
738
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
|
|
739
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
|
|
933
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
|
|
934
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
|
|
935
|
+
|
|
936
|
+
|
|
937
|
+
C_KSlicer_Matrix1_i32 projective_cover_kernel(int dim) except + nogil
|
|
740
938
|
|
|
741
939
|
#------------------------------------------------------------------------------
|
|
742
940
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -748,7 +946,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
748
946
|
C_KSlicer_Matrix0_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int64_t]]&)
|
|
749
947
|
|
|
750
948
|
C_KSlicer_Matrix0_i64& operator=(const C_KSlicer_Matrix0_i64&)
|
|
949
|
+
|
|
950
|
+
pair[C_KSlicer_Matrix0_i64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
951
|
+
C_KSlicer_Matrix0_i64 permute(const vector[unsigned int]&) except + nogil
|
|
952
|
+
|
|
751
953
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
|
|
954
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
955
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
|
|
956
|
+
|
|
752
957
|
void push_to(const Line[int64_t]&) nogil
|
|
753
958
|
void set_one_filtration(const vector[int64_t]&) nogil
|
|
754
959
|
int prune_above_dimension(int) except + nogil
|
|
@@ -763,6 +968,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
763
968
|
pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
|
|
764
969
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
|
|
765
970
|
vector[int] get_dimensions() nogil
|
|
971
|
+
int get_dimension(int i) nogil
|
|
766
972
|
vector[vector[uint]] get_boundaries() nogil
|
|
767
973
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
|
768
974
|
vector[Multi_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -772,12 +978,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
772
978
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
773
979
|
|
|
774
980
|
|
|
775
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
776
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
981
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
982
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
983
|
+
|
|
984
|
+
|
|
985
|
+
C_KSlicer_Matrix0_i64 projective_cover_kernel(int dim) except + nogil
|
|
777
986
|
|
|
778
987
|
#------------------------------------------------------------------------------
|
|
779
988
|
cdef extern from "Persistence_slices_interface.h":
|
|
780
|
-
cdef cppclass C_KSlicer_Matrix1_i64 "TrucPythonInterface<BackendsEnum::Matrix,false,true,int64_t,Available_columns::
|
|
989
|
+
cdef cppclass C_KSlicer_Matrix1_i64 "TrucPythonInterface<BackendsEnum::Matrix,false,true,int64_t,Available_columns::NAIVE_VECTOR>":
|
|
781
990
|
ctypedef int64_t value_type
|
|
782
991
|
|
|
783
992
|
C_KSlicer_Matrix1_i64()
|
|
@@ -785,7 +994,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
785
994
|
C_KSlicer_Matrix1_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int64_t]]&)
|
|
786
995
|
|
|
787
996
|
C_KSlicer_Matrix1_i64& operator=(const C_KSlicer_Matrix1_i64&)
|
|
997
|
+
|
|
998
|
+
pair[C_KSlicer_Matrix1_i64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
999
|
+
C_KSlicer_Matrix1_i64 permute(const vector[unsigned int]&) except + nogil
|
|
1000
|
+
|
|
788
1001
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
|
|
1002
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1003
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
|
|
1004
|
+
|
|
789
1005
|
void push_to(const Line[int64_t]&) nogil
|
|
790
1006
|
void set_one_filtration(const vector[int64_t]&) nogil
|
|
791
1007
|
int prune_above_dimension(int) except + nogil
|
|
@@ -800,6 +1016,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
800
1016
|
pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
|
|
801
1017
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
|
|
802
1018
|
vector[int] get_dimensions() nogil
|
|
1019
|
+
int get_dimension(int i) nogil
|
|
803
1020
|
vector[vector[uint]] get_boundaries() nogil
|
|
804
1021
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
|
805
1022
|
vector[Multi_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -809,8 +1026,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
809
1026
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
810
1027
|
|
|
811
1028
|
|
|
812
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
813
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
1029
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
1030
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
1031
|
+
|
|
1032
|
+
|
|
1033
|
+
C_KSlicer_Matrix1_i64 projective_cover_kernel(int dim) except + nogil
|
|
814
1034
|
|
|
815
1035
|
#------------------------------------------------------------------------------
|
|
816
1036
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -822,7 +1042,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
822
1042
|
C_KSlicer_Matrix0_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[float]]&)
|
|
823
1043
|
|
|
824
1044
|
C_KSlicer_Matrix0_f32& operator=(const C_KSlicer_Matrix0_f32&)
|
|
1045
|
+
|
|
1046
|
+
pair[C_KSlicer_Matrix0_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1047
|
+
C_KSlicer_Matrix0_f32 permute(const vector[unsigned int]&) except + nogil
|
|
1048
|
+
|
|
825
1049
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
1050
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1051
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
1052
|
+
|
|
826
1053
|
void push_to(const Line[float]&) nogil
|
|
827
1054
|
void set_one_filtration(const vector[float]&) nogil
|
|
828
1055
|
int prune_above_dimension(int) except + nogil
|
|
@@ -837,6 +1064,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
837
1064
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
838
1065
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
839
1066
|
vector[int] get_dimensions() nogil
|
|
1067
|
+
int get_dimension(int i) nogil
|
|
840
1068
|
vector[vector[uint]] get_boundaries() nogil
|
|
841
1069
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
842
1070
|
vector[Multi_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -846,12 +1074,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
846
1074
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
847
1075
|
|
|
848
1076
|
|
|
849
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
850
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
1077
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
1078
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
1079
|
+
|
|
1080
|
+
|
|
1081
|
+
C_KSlicer_Matrix0_f32 projective_cover_kernel(int dim) except + nogil
|
|
851
1082
|
|
|
852
1083
|
#------------------------------------------------------------------------------
|
|
853
1084
|
cdef extern from "Persistence_slices_interface.h":
|
|
854
|
-
cdef cppclass C_KSlicer_Matrix1_f32 "TrucPythonInterface<BackendsEnum::Matrix,false,true,float,Available_columns::
|
|
1085
|
+
cdef cppclass C_KSlicer_Matrix1_f32 "TrucPythonInterface<BackendsEnum::Matrix,false,true,float,Available_columns::NAIVE_VECTOR>":
|
|
855
1086
|
ctypedef float value_type
|
|
856
1087
|
|
|
857
1088
|
C_KSlicer_Matrix1_f32()
|
|
@@ -859,7 +1090,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
859
1090
|
C_KSlicer_Matrix1_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[float]]&)
|
|
860
1091
|
|
|
861
1092
|
C_KSlicer_Matrix1_f32& operator=(const C_KSlicer_Matrix1_f32&)
|
|
1093
|
+
|
|
1094
|
+
pair[C_KSlicer_Matrix1_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1095
|
+
C_KSlicer_Matrix1_f32 permute(const vector[unsigned int]&) except + nogil
|
|
1096
|
+
|
|
862
1097
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
1098
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1099
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
1100
|
+
|
|
863
1101
|
void push_to(const Line[float]&) nogil
|
|
864
1102
|
void set_one_filtration(const vector[float]&) nogil
|
|
865
1103
|
int prune_above_dimension(int) except + nogil
|
|
@@ -874,6 +1112,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
874
1112
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
875
1113
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
876
1114
|
vector[int] get_dimensions() nogil
|
|
1115
|
+
int get_dimension(int i) nogil
|
|
877
1116
|
vector[vector[uint]] get_boundaries() nogil
|
|
878
1117
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
879
1118
|
vector[Multi_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -883,8 +1122,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
883
1122
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
884
1123
|
|
|
885
1124
|
|
|
886
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
887
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
1125
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
1126
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
1127
|
+
|
|
1128
|
+
|
|
1129
|
+
C_KSlicer_Matrix1_f32 projective_cover_kernel(int dim) except + nogil
|
|
888
1130
|
|
|
889
1131
|
#------------------------------------------------------------------------------
|
|
890
1132
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -896,7 +1138,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
896
1138
|
C_KSlicer_Matrix0_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[double]]&)
|
|
897
1139
|
|
|
898
1140
|
C_KSlicer_Matrix0_f64& operator=(const C_KSlicer_Matrix0_f64&)
|
|
1141
|
+
|
|
1142
|
+
pair[C_KSlicer_Matrix0_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1143
|
+
C_KSlicer_Matrix0_f64 permute(const vector[unsigned int]&) except + nogil
|
|
1144
|
+
|
|
899
1145
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
1146
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1147
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
1148
|
+
|
|
900
1149
|
void push_to(const Line[double]&) nogil
|
|
901
1150
|
void set_one_filtration(const vector[double]&) nogil
|
|
902
1151
|
int prune_above_dimension(int) except + nogil
|
|
@@ -911,6 +1160,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
911
1160
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
912
1161
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
913
1162
|
vector[int] get_dimensions() nogil
|
|
1163
|
+
int get_dimension(int i) nogil
|
|
914
1164
|
vector[vector[uint]] get_boundaries() nogil
|
|
915
1165
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
916
1166
|
vector[Multi_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -920,12 +1170,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
920
1170
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
921
1171
|
|
|
922
1172
|
|
|
923
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
924
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
1173
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
1174
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
1175
|
+
|
|
1176
|
+
|
|
1177
|
+
C_KSlicer_Matrix0_f64 projective_cover_kernel(int dim) except + nogil
|
|
925
1178
|
|
|
926
1179
|
#------------------------------------------------------------------------------
|
|
927
1180
|
cdef extern from "Persistence_slices_interface.h":
|
|
928
|
-
cdef cppclass C_KSlicer_Matrix1_f64 "TrucPythonInterface<BackendsEnum::Matrix,false,true,double,Available_columns::
|
|
1181
|
+
cdef cppclass C_KSlicer_Matrix1_f64 "TrucPythonInterface<BackendsEnum::Matrix,false,true,double,Available_columns::NAIVE_VECTOR>":
|
|
929
1182
|
ctypedef double value_type
|
|
930
1183
|
|
|
931
1184
|
C_KSlicer_Matrix1_f64()
|
|
@@ -933,7 +1186,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
933
1186
|
C_KSlicer_Matrix1_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[double]]&)
|
|
934
1187
|
|
|
935
1188
|
C_KSlicer_Matrix1_f64& operator=(const C_KSlicer_Matrix1_f64&)
|
|
1189
|
+
|
|
1190
|
+
pair[C_KSlicer_Matrix1_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1191
|
+
C_KSlicer_Matrix1_f64 permute(const vector[unsigned int]&) except + nogil
|
|
1192
|
+
|
|
936
1193
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
1194
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1195
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
1196
|
+
|
|
937
1197
|
void push_to(const Line[double]&) nogil
|
|
938
1198
|
void set_one_filtration(const vector[double]&) nogil
|
|
939
1199
|
int prune_above_dimension(int) except + nogil
|
|
@@ -948,6 +1208,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
948
1208
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
949
1209
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
950
1210
|
vector[int] get_dimensions() nogil
|
|
1211
|
+
int get_dimension(int i) nogil
|
|
951
1212
|
vector[vector[uint]] get_boundaries() nogil
|
|
952
1213
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
953
1214
|
vector[Multi_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -957,8 +1218,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
957
1218
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
958
1219
|
|
|
959
1220
|
|
|
960
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
961
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
1221
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
1222
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
1223
|
+
|
|
1224
|
+
|
|
1225
|
+
C_KSlicer_Matrix1_f64 projective_cover_kernel(int dim) except + nogil
|
|
962
1226
|
|
|
963
1227
|
#------------------------------------------------------------------------------
|
|
964
1228
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -970,7 +1234,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
970
1234
|
C_Slicer_Matrix0_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int32_t]]&)
|
|
971
1235
|
|
|
972
1236
|
C_Slicer_Matrix0_i32& operator=(const C_Slicer_Matrix0_i32&)
|
|
1237
|
+
|
|
1238
|
+
pair[C_Slicer_Matrix0_i32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1239
|
+
C_Slicer_Matrix0_i32 permute(const vector[unsigned int]&) except + nogil
|
|
1240
|
+
|
|
973
1241
|
vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
|
|
1242
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1243
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
|
|
1244
|
+
|
|
974
1245
|
void push_to(const Line[int32_t]&) nogil
|
|
975
1246
|
void set_one_filtration(const vector[int32_t]&) nogil
|
|
976
1247
|
int prune_above_dimension(int) except + nogil
|
|
@@ -985,6 +1256,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
985
1256
|
pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
|
|
986
1257
|
vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
|
|
987
1258
|
vector[int] get_dimensions() nogil
|
|
1259
|
+
int get_dimension(int i) nogil
|
|
988
1260
|
vector[vector[uint]] get_boundaries() nogil
|
|
989
1261
|
void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
|
|
990
1262
|
vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
|
|
@@ -994,12 +1266,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
994
1266
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
995
1267
|
|
|
996
1268
|
|
|
997
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
|
|
998
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
|
|
1269
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
|
|
1270
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
|
|
1271
|
+
|
|
1272
|
+
|
|
1273
|
+
C_Slicer_Matrix0_i32 projective_cover_kernel(int dim) except + nogil
|
|
999
1274
|
|
|
1000
1275
|
#------------------------------------------------------------------------------
|
|
1001
1276
|
cdef extern from "Persistence_slices_interface.h":
|
|
1002
|
-
cdef cppclass C_Slicer_Matrix1_i32 "TrucPythonInterface<BackendsEnum::Matrix,false,false,int32_t,Available_columns::
|
|
1277
|
+
cdef cppclass C_Slicer_Matrix1_i32 "TrucPythonInterface<BackendsEnum::Matrix,false,false,int32_t,Available_columns::NAIVE_VECTOR>":
|
|
1003
1278
|
ctypedef int32_t value_type
|
|
1004
1279
|
|
|
1005
1280
|
C_Slicer_Matrix1_i32()
|
|
@@ -1007,7 +1282,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1007
1282
|
C_Slicer_Matrix1_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int32_t]]&)
|
|
1008
1283
|
|
|
1009
1284
|
C_Slicer_Matrix1_i32& operator=(const C_Slicer_Matrix1_i32&)
|
|
1285
|
+
|
|
1286
|
+
pair[C_Slicer_Matrix1_i32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1287
|
+
C_Slicer_Matrix1_i32 permute(const vector[unsigned int]&) except + nogil
|
|
1288
|
+
|
|
1010
1289
|
vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
|
|
1290
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1291
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
|
|
1292
|
+
|
|
1011
1293
|
void push_to(const Line[int32_t]&) nogil
|
|
1012
1294
|
void set_one_filtration(const vector[int32_t]&) nogil
|
|
1013
1295
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1022,6 +1304,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1022
1304
|
pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
|
|
1023
1305
|
vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
|
|
1024
1306
|
vector[int] get_dimensions() nogil
|
|
1307
|
+
int get_dimension(int i) nogil
|
|
1025
1308
|
vector[vector[uint]] get_boundaries() nogil
|
|
1026
1309
|
void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
|
|
1027
1310
|
vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
|
|
@@ -1031,8 +1314,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1031
1314
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1032
1315
|
|
|
1033
1316
|
|
|
1034
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
|
|
1035
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
|
|
1317
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
|
|
1318
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
|
|
1319
|
+
|
|
1320
|
+
|
|
1321
|
+
C_Slicer_Matrix1_i32 projective_cover_kernel(int dim) except + nogil
|
|
1036
1322
|
|
|
1037
1323
|
#------------------------------------------------------------------------------
|
|
1038
1324
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1044,7 +1330,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1044
1330
|
C_Slicer_Matrix0_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int64_t]]&)
|
|
1045
1331
|
|
|
1046
1332
|
C_Slicer_Matrix0_i64& operator=(const C_Slicer_Matrix0_i64&)
|
|
1333
|
+
|
|
1334
|
+
pair[C_Slicer_Matrix0_i64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1335
|
+
C_Slicer_Matrix0_i64 permute(const vector[unsigned int]&) except + nogil
|
|
1336
|
+
|
|
1047
1337
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
|
|
1338
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1339
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
|
|
1340
|
+
|
|
1048
1341
|
void push_to(const Line[int64_t]&) nogil
|
|
1049
1342
|
void set_one_filtration(const vector[int64_t]&) nogil
|
|
1050
1343
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1059,6 +1352,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1059
1352
|
pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
|
|
1060
1353
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
|
|
1061
1354
|
vector[int] get_dimensions() nogil
|
|
1355
|
+
int get_dimension(int i) nogil
|
|
1062
1356
|
vector[vector[uint]] get_boundaries() nogil
|
|
1063
1357
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
|
1064
1358
|
vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -1068,12 +1362,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1068
1362
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1069
1363
|
|
|
1070
1364
|
|
|
1071
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
1072
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
1365
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
1366
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
1367
|
+
|
|
1368
|
+
|
|
1369
|
+
C_Slicer_Matrix0_i64 projective_cover_kernel(int dim) except + nogil
|
|
1073
1370
|
|
|
1074
1371
|
#------------------------------------------------------------------------------
|
|
1075
1372
|
cdef extern from "Persistence_slices_interface.h":
|
|
1076
|
-
cdef cppclass C_Slicer_Matrix1_i64 "TrucPythonInterface<BackendsEnum::Matrix,false,false,int64_t,Available_columns::
|
|
1373
|
+
cdef cppclass C_Slicer_Matrix1_i64 "TrucPythonInterface<BackendsEnum::Matrix,false,false,int64_t,Available_columns::NAIVE_VECTOR>":
|
|
1077
1374
|
ctypedef int64_t value_type
|
|
1078
1375
|
|
|
1079
1376
|
C_Slicer_Matrix1_i64()
|
|
@@ -1081,7 +1378,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1081
1378
|
C_Slicer_Matrix1_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int64_t]]&)
|
|
1082
1379
|
|
|
1083
1380
|
C_Slicer_Matrix1_i64& operator=(const C_Slicer_Matrix1_i64&)
|
|
1381
|
+
|
|
1382
|
+
pair[C_Slicer_Matrix1_i64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1383
|
+
C_Slicer_Matrix1_i64 permute(const vector[unsigned int]&) except + nogil
|
|
1384
|
+
|
|
1084
1385
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
|
|
1386
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1387
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
|
|
1388
|
+
|
|
1085
1389
|
void push_to(const Line[int64_t]&) nogil
|
|
1086
1390
|
void set_one_filtration(const vector[int64_t]&) nogil
|
|
1087
1391
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1096,6 +1400,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1096
1400
|
pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
|
|
1097
1401
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
|
|
1098
1402
|
vector[int] get_dimensions() nogil
|
|
1403
|
+
int get_dimension(int i) nogil
|
|
1099
1404
|
vector[vector[uint]] get_boundaries() nogil
|
|
1100
1405
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
|
1101
1406
|
vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -1105,8 +1410,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1105
1410
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1106
1411
|
|
|
1107
1412
|
|
|
1108
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
1109
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
1413
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
1414
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
1415
|
+
|
|
1416
|
+
|
|
1417
|
+
C_Slicer_Matrix1_i64 projective_cover_kernel(int dim) except + nogil
|
|
1110
1418
|
|
|
1111
1419
|
#------------------------------------------------------------------------------
|
|
1112
1420
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1118,7 +1426,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1118
1426
|
C_Slicer_Matrix0_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[float]]&)
|
|
1119
1427
|
|
|
1120
1428
|
C_Slicer_Matrix0_f32& operator=(const C_Slicer_Matrix0_f32&)
|
|
1429
|
+
|
|
1430
|
+
pair[C_Slicer_Matrix0_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1431
|
+
C_Slicer_Matrix0_f32 permute(const vector[unsigned int]&) except + nogil
|
|
1432
|
+
|
|
1121
1433
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
1434
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1435
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
1436
|
+
|
|
1122
1437
|
void push_to(const Line[float]&) nogil
|
|
1123
1438
|
void set_one_filtration(const vector[float]&) nogil
|
|
1124
1439
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1133,6 +1448,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1133
1448
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
1134
1449
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
1135
1450
|
vector[int] get_dimensions() nogil
|
|
1451
|
+
int get_dimension(int i) nogil
|
|
1136
1452
|
vector[vector[uint]] get_boundaries() nogil
|
|
1137
1453
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
1138
1454
|
vector[One_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -1142,12 +1458,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1142
1458
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1143
1459
|
|
|
1144
1460
|
|
|
1145
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
1146
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
1461
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
1462
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
1463
|
+
|
|
1464
|
+
|
|
1465
|
+
C_Slicer_Matrix0_f32 projective_cover_kernel(int dim) except + nogil
|
|
1147
1466
|
|
|
1148
1467
|
#------------------------------------------------------------------------------
|
|
1149
1468
|
cdef extern from "Persistence_slices_interface.h":
|
|
1150
|
-
cdef cppclass C_Slicer_Matrix1_f32 "TrucPythonInterface<BackendsEnum::Matrix,false,false,float,Available_columns::
|
|
1469
|
+
cdef cppclass C_Slicer_Matrix1_f32 "TrucPythonInterface<BackendsEnum::Matrix,false,false,float,Available_columns::NAIVE_VECTOR>":
|
|
1151
1470
|
ctypedef float value_type
|
|
1152
1471
|
|
|
1153
1472
|
C_Slicer_Matrix1_f32()
|
|
@@ -1155,7 +1474,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1155
1474
|
C_Slicer_Matrix1_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[float]]&)
|
|
1156
1475
|
|
|
1157
1476
|
C_Slicer_Matrix1_f32& operator=(const C_Slicer_Matrix1_f32&)
|
|
1477
|
+
|
|
1478
|
+
pair[C_Slicer_Matrix1_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1479
|
+
C_Slicer_Matrix1_f32 permute(const vector[unsigned int]&) except + nogil
|
|
1480
|
+
|
|
1158
1481
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
1482
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1483
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
1484
|
+
|
|
1159
1485
|
void push_to(const Line[float]&) nogil
|
|
1160
1486
|
void set_one_filtration(const vector[float]&) nogil
|
|
1161
1487
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1170,6 +1496,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1170
1496
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
1171
1497
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
1172
1498
|
vector[int] get_dimensions() nogil
|
|
1499
|
+
int get_dimension(int i) nogil
|
|
1173
1500
|
vector[vector[uint]] get_boundaries() nogil
|
|
1174
1501
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
1175
1502
|
vector[One_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -1179,8 +1506,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1179
1506
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1180
1507
|
|
|
1181
1508
|
|
|
1182
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
1183
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
1509
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
1510
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
1511
|
+
|
|
1512
|
+
|
|
1513
|
+
C_Slicer_Matrix1_f32 projective_cover_kernel(int dim) except + nogil
|
|
1184
1514
|
|
|
1185
1515
|
#------------------------------------------------------------------------------
|
|
1186
1516
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1192,7 +1522,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1192
1522
|
C_Slicer_Matrix0_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[double]]&)
|
|
1193
1523
|
|
|
1194
1524
|
C_Slicer_Matrix0_f64& operator=(const C_Slicer_Matrix0_f64&)
|
|
1525
|
+
|
|
1526
|
+
pair[C_Slicer_Matrix0_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1527
|
+
C_Slicer_Matrix0_f64 permute(const vector[unsigned int]&) except + nogil
|
|
1528
|
+
|
|
1195
1529
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
1530
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1531
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
1532
|
+
|
|
1196
1533
|
void push_to(const Line[double]&) nogil
|
|
1197
1534
|
void set_one_filtration(const vector[double]&) nogil
|
|
1198
1535
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1207,6 +1544,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1207
1544
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
1208
1545
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
1209
1546
|
vector[int] get_dimensions() nogil
|
|
1547
|
+
int get_dimension(int i) nogil
|
|
1210
1548
|
vector[vector[uint]] get_boundaries() nogil
|
|
1211
1549
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
1212
1550
|
vector[One_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -1216,12 +1554,15 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1216
1554
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1217
1555
|
|
|
1218
1556
|
|
|
1219
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
1220
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
1557
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
1558
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
1559
|
+
|
|
1560
|
+
|
|
1561
|
+
C_Slicer_Matrix0_f64 projective_cover_kernel(int dim) except + nogil
|
|
1221
1562
|
|
|
1222
1563
|
#------------------------------------------------------------------------------
|
|
1223
1564
|
cdef extern from "Persistence_slices_interface.h":
|
|
1224
|
-
cdef cppclass C_Slicer_Matrix1_f64 "TrucPythonInterface<BackendsEnum::Matrix,false,false,double,Available_columns::
|
|
1565
|
+
cdef cppclass C_Slicer_Matrix1_f64 "TrucPythonInterface<BackendsEnum::Matrix,false,false,double,Available_columns::NAIVE_VECTOR>":
|
|
1225
1566
|
ctypedef double value_type
|
|
1226
1567
|
|
|
1227
1568
|
C_Slicer_Matrix1_f64()
|
|
@@ -1229,7 +1570,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1229
1570
|
C_Slicer_Matrix1_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[double]]&)
|
|
1230
1571
|
|
|
1231
1572
|
C_Slicer_Matrix1_f64& operator=(const C_Slicer_Matrix1_f64&)
|
|
1573
|
+
|
|
1574
|
+
pair[C_Slicer_Matrix1_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1575
|
+
C_Slicer_Matrix1_f64 permute(const vector[unsigned int]&) except + nogil
|
|
1576
|
+
|
|
1232
1577
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
1578
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1579
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
1580
|
+
|
|
1233
1581
|
void push_to(const Line[double]&) nogil
|
|
1234
1582
|
void set_one_filtration(const vector[double]&) nogil
|
|
1235
1583
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1244,6 +1592,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1244
1592
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
1245
1593
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
1246
1594
|
vector[int] get_dimensions() nogil
|
|
1595
|
+
int get_dimension(int i) nogil
|
|
1247
1596
|
vector[vector[uint]] get_boundaries() nogil
|
|
1248
1597
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
1249
1598
|
vector[One_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -1253,8 +1602,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1253
1602
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1254
1603
|
|
|
1255
1604
|
|
|
1256
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
1257
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
1605
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
1606
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
1607
|
+
|
|
1608
|
+
|
|
1609
|
+
C_Slicer_Matrix1_f64 projective_cover_kernel(int dim) except + nogil
|
|
1258
1610
|
|
|
1259
1611
|
#------------------------------------------------------------------------------
|
|
1260
1612
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1266,7 +1618,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1266
1618
|
C_KSlicer_GudhiCohomology0_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int32_t]]&)
|
|
1267
1619
|
|
|
1268
1620
|
C_KSlicer_GudhiCohomology0_i32& operator=(const C_KSlicer_GudhiCohomology0_i32&)
|
|
1621
|
+
|
|
1622
|
+
pair[C_KSlicer_GudhiCohomology0_i32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1623
|
+
C_KSlicer_GudhiCohomology0_i32 permute(const vector[unsigned int]&) except + nogil
|
|
1624
|
+
|
|
1269
1625
|
vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
|
|
1626
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1627
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
|
|
1628
|
+
|
|
1270
1629
|
void push_to(const Line[int32_t]&) nogil
|
|
1271
1630
|
void set_one_filtration(const vector[int32_t]&) nogil
|
|
1272
1631
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1281,6 +1640,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1281
1640
|
pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
|
|
1282
1641
|
vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
|
|
1283
1642
|
vector[int] get_dimensions() nogil
|
|
1643
|
+
int get_dimension(int i) nogil
|
|
1284
1644
|
vector[vector[uint]] get_boundaries() nogil
|
|
1285
1645
|
void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
|
|
1286
1646
|
vector[Multi_critical_filtration[int32_t]]& get_filtrations() nogil
|
|
@@ -1290,8 +1650,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1290
1650
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
1291
1651
|
|
|
1292
1652
|
|
|
1293
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
|
|
1294
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
|
|
1653
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
|
|
1654
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
|
|
1655
|
+
|
|
1656
|
+
|
|
1657
|
+
C_KSlicer_GudhiCohomology0_i32 projective_cover_kernel(int dim) except + nogil
|
|
1295
1658
|
|
|
1296
1659
|
#------------------------------------------------------------------------------
|
|
1297
1660
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1303,7 +1666,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1303
1666
|
C_KSlicer_GudhiCohomology0_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[int64_t]]&)
|
|
1304
1667
|
|
|
1305
1668
|
C_KSlicer_GudhiCohomology0_i64& operator=(const C_KSlicer_GudhiCohomology0_i64&)
|
|
1669
|
+
|
|
1670
|
+
pair[C_KSlicer_GudhiCohomology0_i64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1671
|
+
C_KSlicer_GudhiCohomology0_i64 permute(const vector[unsigned int]&) except + nogil
|
|
1672
|
+
|
|
1306
1673
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
|
|
1674
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1675
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
|
|
1676
|
+
|
|
1307
1677
|
void push_to(const Line[int64_t]&) nogil
|
|
1308
1678
|
void set_one_filtration(const vector[int64_t]&) nogil
|
|
1309
1679
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1318,6 +1688,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1318
1688
|
pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
|
|
1319
1689
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
|
|
1320
1690
|
vector[int] get_dimensions() nogil
|
|
1691
|
+
int get_dimension(int i) nogil
|
|
1321
1692
|
vector[vector[uint]] get_boundaries() nogil
|
|
1322
1693
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
|
1323
1694
|
vector[Multi_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -1327,8 +1698,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1327
1698
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
1328
1699
|
|
|
1329
1700
|
|
|
1330
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
1331
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
1701
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
1702
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
1703
|
+
|
|
1704
|
+
|
|
1705
|
+
C_KSlicer_GudhiCohomology0_i64 projective_cover_kernel(int dim) except + nogil
|
|
1332
1706
|
|
|
1333
1707
|
#------------------------------------------------------------------------------
|
|
1334
1708
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1340,7 +1714,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1340
1714
|
C_KSlicer_GudhiCohomology0_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[float]]&)
|
|
1341
1715
|
|
|
1342
1716
|
C_KSlicer_GudhiCohomology0_f32& operator=(const C_KSlicer_GudhiCohomology0_f32&)
|
|
1717
|
+
|
|
1718
|
+
pair[C_KSlicer_GudhiCohomology0_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1719
|
+
C_KSlicer_GudhiCohomology0_f32 permute(const vector[unsigned int]&) except + nogil
|
|
1720
|
+
|
|
1343
1721
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
1722
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1723
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
1724
|
+
|
|
1344
1725
|
void push_to(const Line[float]&) nogil
|
|
1345
1726
|
void set_one_filtration(const vector[float]&) nogil
|
|
1346
1727
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1355,6 +1736,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1355
1736
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
1356
1737
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
1357
1738
|
vector[int] get_dimensions() nogil
|
|
1739
|
+
int get_dimension(int i) nogil
|
|
1358
1740
|
vector[vector[uint]] get_boundaries() nogil
|
|
1359
1741
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
1360
1742
|
vector[Multi_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -1364,8 +1746,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1364
1746
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
1365
1747
|
|
|
1366
1748
|
|
|
1367
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
1368
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
1749
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
1750
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
1751
|
+
|
|
1752
|
+
|
|
1753
|
+
C_KSlicer_GudhiCohomology0_f32 projective_cover_kernel(int dim) except + nogil
|
|
1369
1754
|
|
|
1370
1755
|
#------------------------------------------------------------------------------
|
|
1371
1756
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1377,7 +1762,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1377
1762
|
C_KSlicer_GudhiCohomology0_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[Multi_critical_filtration[double]]&)
|
|
1378
1763
|
|
|
1379
1764
|
C_KSlicer_GudhiCohomology0_f64& operator=(const C_KSlicer_GudhiCohomology0_f64&)
|
|
1765
|
+
|
|
1766
|
+
pair[C_KSlicer_GudhiCohomology0_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1767
|
+
C_KSlicer_GudhiCohomology0_f64 permute(const vector[unsigned int]&) except + nogil
|
|
1768
|
+
|
|
1380
1769
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
1770
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1771
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
1772
|
+
|
|
1381
1773
|
void push_to(const Line[double]&) nogil
|
|
1382
1774
|
void set_one_filtration(const vector[double]&) nogil
|
|
1383
1775
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1392,6 +1784,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1392
1784
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
1393
1785
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
1394
1786
|
vector[int] get_dimensions() nogil
|
|
1787
|
+
int get_dimension(int i) nogil
|
|
1395
1788
|
vector[vector[uint]] get_boundaries() nogil
|
|
1396
1789
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
1397
1790
|
vector[Multi_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -1401,8 +1794,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1401
1794
|
void write_to_scc_file(const string&, int, int, bool, bool, bool, bool) nogil
|
|
1402
1795
|
|
|
1403
1796
|
|
|
1404
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
1405
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
1797
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
1798
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
1799
|
+
|
|
1800
|
+
|
|
1801
|
+
C_KSlicer_GudhiCohomology0_f64 projective_cover_kernel(int dim) except + nogil
|
|
1406
1802
|
|
|
1407
1803
|
#------------------------------------------------------------------------------
|
|
1408
1804
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1414,7 +1810,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1414
1810
|
C_Slicer_GudhiCohomology0_i32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int32_t]]&)
|
|
1415
1811
|
|
|
1416
1812
|
C_Slicer_GudhiCohomology0_i32& operator=(const C_Slicer_GudhiCohomology0_i32&)
|
|
1813
|
+
|
|
1814
|
+
pair[C_Slicer_GudhiCohomology0_i32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1815
|
+
C_Slicer_GudhiCohomology0_i32 permute(const vector[unsigned int]&) except + nogil
|
|
1816
|
+
|
|
1417
1817
|
vector[vector[pair[int32_t, int32_t]]] get_barcode() nogil
|
|
1818
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1819
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int32_t*, int size, bool ignore_inf) except + nogil
|
|
1820
|
+
|
|
1418
1821
|
void push_to(const Line[int32_t]&) nogil
|
|
1419
1822
|
void set_one_filtration(const vector[int32_t]&) nogil
|
|
1420
1823
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1429,6 +1832,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1429
1832
|
pair[One_critical_filtration[int32_t], One_critical_filtration[int32_t]] get_bounding_box() except + nogil
|
|
1430
1833
|
vector[One_critical_filtration[int32_t]] get_filtration_values() nogil
|
|
1431
1834
|
vector[int] get_dimensions() nogil
|
|
1835
|
+
int get_dimension(int i) nogil
|
|
1432
1836
|
vector[vector[uint]] get_boundaries() nogil
|
|
1433
1837
|
void coarsen_on_grid_inplace(vector[vector[int32_t]], bool) nogil
|
|
1434
1838
|
vector[One_critical_filtration[int32_t]]& get_filtrations() nogil
|
|
@@ -1438,8 +1842,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1438
1842
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1439
1843
|
|
|
1440
1844
|
|
|
1441
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]]) nogil
|
|
1442
|
-
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]]) nogil
|
|
1845
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[vector[int32_t]], bool) except + nogil
|
|
1846
|
+
vector[vector[vector[pair[int32_t, int32_t]]]] persistence_on_lines(vector[pair[vector[int32_t],vector[int32_t]]],bool) except + nogil
|
|
1847
|
+
|
|
1848
|
+
|
|
1849
|
+
C_Slicer_GudhiCohomology0_i32 projective_cover_kernel(int dim) except + nogil
|
|
1443
1850
|
|
|
1444
1851
|
#------------------------------------------------------------------------------
|
|
1445
1852
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1451,7 +1858,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1451
1858
|
C_Slicer_GudhiCohomology0_i64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[int64_t]]&)
|
|
1452
1859
|
|
|
1453
1860
|
C_Slicer_GudhiCohomology0_i64& operator=(const C_Slicer_GudhiCohomology0_i64&)
|
|
1861
|
+
|
|
1862
|
+
pair[C_Slicer_GudhiCohomology0_i64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1863
|
+
C_Slicer_GudhiCohomology0_i64 permute(const vector[unsigned int]&) except + nogil
|
|
1864
|
+
|
|
1454
1865
|
vector[vector[pair[int64_t, int64_t]]] get_barcode() nogil
|
|
1866
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1867
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(int64_t*, int size, bool ignore_inf) except + nogil
|
|
1868
|
+
|
|
1455
1869
|
void push_to(const Line[int64_t]&) nogil
|
|
1456
1870
|
void set_one_filtration(const vector[int64_t]&) nogil
|
|
1457
1871
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1466,6 +1880,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1466
1880
|
pair[One_critical_filtration[int64_t], One_critical_filtration[int64_t]] get_bounding_box() except + nogil
|
|
1467
1881
|
vector[One_critical_filtration[int64_t]] get_filtration_values() nogil
|
|
1468
1882
|
vector[int] get_dimensions() nogil
|
|
1883
|
+
int get_dimension(int i) nogil
|
|
1469
1884
|
vector[vector[uint]] get_boundaries() nogil
|
|
1470
1885
|
void coarsen_on_grid_inplace(vector[vector[int64_t]], bool) nogil
|
|
1471
1886
|
vector[One_critical_filtration[int64_t]]& get_filtrations() nogil
|
|
@@ -1475,8 +1890,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1475
1890
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1476
1891
|
|
|
1477
1892
|
|
|
1478
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]]) nogil
|
|
1479
|
-
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]]) nogil
|
|
1893
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[vector[int64_t]], bool) except + nogil
|
|
1894
|
+
vector[vector[vector[pair[int64_t, int64_t]]]] persistence_on_lines(vector[pair[vector[int64_t],vector[int64_t]]],bool) except + nogil
|
|
1895
|
+
|
|
1896
|
+
|
|
1897
|
+
C_Slicer_GudhiCohomology0_i64 projective_cover_kernel(int dim) except + nogil
|
|
1480
1898
|
|
|
1481
1899
|
#------------------------------------------------------------------------------
|
|
1482
1900
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1488,7 +1906,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1488
1906
|
C_Slicer_GudhiCohomology0_f32(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[float]]&)
|
|
1489
1907
|
|
|
1490
1908
|
C_Slicer_GudhiCohomology0_f32& operator=(const C_Slicer_GudhiCohomology0_f32&)
|
|
1909
|
+
|
|
1910
|
+
pair[C_Slicer_GudhiCohomology0_f32, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1911
|
+
C_Slicer_GudhiCohomology0_f32 permute(const vector[unsigned int]&) except + nogil
|
|
1912
|
+
|
|
1491
1913
|
vector[vector[pair[float, float]]] get_barcode() nogil
|
|
1914
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1915
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(float*, int size, bool ignore_inf) except + nogil
|
|
1916
|
+
|
|
1492
1917
|
void push_to(const Line[float]&) nogil
|
|
1493
1918
|
void set_one_filtration(const vector[float]&) nogil
|
|
1494
1919
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1503,6 +1928,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1503
1928
|
pair[One_critical_filtration[float], One_critical_filtration[float]] get_bounding_box() except + nogil
|
|
1504
1929
|
vector[One_critical_filtration[float]] get_filtration_values() nogil
|
|
1505
1930
|
vector[int] get_dimensions() nogil
|
|
1931
|
+
int get_dimension(int i) nogil
|
|
1506
1932
|
vector[vector[uint]] get_boundaries() nogil
|
|
1507
1933
|
void coarsen_on_grid_inplace(vector[vector[float]], bool) nogil
|
|
1508
1934
|
vector[One_critical_filtration[float]]& get_filtrations() nogil
|
|
@@ -1512,8 +1938,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1512
1938
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1513
1939
|
|
|
1514
1940
|
|
|
1515
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]]) nogil
|
|
1516
|
-
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]]) nogil
|
|
1941
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[vector[float]], bool) except + nogil
|
|
1942
|
+
vector[vector[vector[pair[float, float]]]] persistence_on_lines(vector[pair[vector[float],vector[float]]],bool) except + nogil
|
|
1943
|
+
|
|
1944
|
+
|
|
1945
|
+
C_Slicer_GudhiCohomology0_f32 projective_cover_kernel(int dim) except + nogil
|
|
1517
1946
|
|
|
1518
1947
|
#------------------------------------------------------------------------------
|
|
1519
1948
|
cdef extern from "Persistence_slices_interface.h":
|
|
@@ -1525,7 +1954,14 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1525
1954
|
C_Slicer_GudhiCohomology0_f64(const vector[vector[unsigned int]]&, const vector[int]&, const vector[One_critical_filtration[double]]&)
|
|
1526
1955
|
|
|
1527
1956
|
C_Slicer_GudhiCohomology0_f64& operator=(const C_Slicer_GudhiCohomology0_f64&)
|
|
1957
|
+
|
|
1958
|
+
pair[C_Slicer_GudhiCohomology0_f64, vector[unsigned int]] colexical_rearange() except + nogil
|
|
1959
|
+
C_Slicer_GudhiCohomology0_f64 permute(const vector[unsigned int]&) except + nogil
|
|
1960
|
+
|
|
1528
1961
|
vector[vector[pair[double, double]]] get_barcode() nogil
|
|
1962
|
+
vector[vector[pair[int,int]]] get_barcode_idx() nogil
|
|
1963
|
+
vector[vector[vector[pair[int,int]]]] custom_persistences(double*, int size, bool ignore_inf) except + nogil
|
|
1964
|
+
|
|
1529
1965
|
void push_to(const Line[double]&) nogil
|
|
1530
1966
|
void set_one_filtration(const vector[double]&) nogil
|
|
1531
1967
|
int prune_above_dimension(int) except + nogil
|
|
@@ -1540,6 +1976,7 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1540
1976
|
pair[One_critical_filtration[double], One_critical_filtration[double]] get_bounding_box() except + nogil
|
|
1541
1977
|
vector[One_critical_filtration[double]] get_filtration_values() nogil
|
|
1542
1978
|
vector[int] get_dimensions() nogil
|
|
1979
|
+
int get_dimension(int i) nogil
|
|
1543
1980
|
vector[vector[uint]] get_boundaries() nogil
|
|
1544
1981
|
void coarsen_on_grid_inplace(vector[vector[double]], bool) nogil
|
|
1545
1982
|
vector[One_critical_filtration[double]]& get_filtrations() nogil
|
|
@@ -1549,8 +1986,11 @@ cdef extern from "Persistence_slices_interface.h":
|
|
|
1549
1986
|
void build_from_scc_file(const string&, bool, bool, int) except + nogil
|
|
1550
1987
|
|
|
1551
1988
|
|
|
1552
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]]) nogil
|
|
1553
|
-
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]]) nogil
|
|
1989
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[vector[double]], bool) except + nogil
|
|
1990
|
+
vector[vector[vector[pair[double, double]]]] persistence_on_lines(vector[pair[vector[double],vector[double]]],bool) except + nogil
|
|
1991
|
+
|
|
1992
|
+
|
|
1993
|
+
C_Slicer_GudhiCohomology0_f64 projective_cover_kernel(int dim) except + nogil
|
|
1554
1994
|
|
|
1555
1995
|
|
|
1556
1996
|
|
|
@@ -1573,51 +2013,51 @@ cdef extern from "multiparameter_module_approximation/approximation.h" namespace
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1573
2013
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1574
2014
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import multipers.slicer as mps
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1575
2015
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from cython.operator cimport dereference
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1576
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-
cdef inline Module[
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2016
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+
cdef inline Module[float] _multiparameter_module_approximation_f32(object slicer, One_critical_filtration[float] direction, float max_error, Box[float] box, bool threshold, bool complete, bool verbose):
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1577
2017
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import multipers.slicer as mps
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1578
2018
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cdef intptr_t slicer_ptr = <intptr_t>(slicer.get_ptr())
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1579
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-
cdef Module[
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2019
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+
cdef Module[float] mod
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1580
2020
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if False:
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1581
2021
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pass
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1582
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-
elif isinstance(slicer, mps.
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2022
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+
elif isinstance(slicer, mps._KSlicer_Matrix0_vine_f32):
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1583
2023
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with nogil:
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1584
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-
mod = multiparameter_module_approximation(dereference(<
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2024
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+
mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix0_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1585
2025
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return mod
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1586
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-
elif isinstance(slicer, mps.
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2026
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+
elif isinstance(slicer, mps._KSlicer_Matrix1_vine_f32):
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1587
2027
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with nogil:
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1588
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-
mod = multiparameter_module_approximation(dereference(<
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2028
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+
mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix1_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1589
2029
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return mod
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1590
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-
elif isinstance(slicer, mps.
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2030
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+
elif isinstance(slicer, mps._Slicer_Matrix0_vine_f32):
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1591
2031
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with nogil:
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1592
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-
mod = multiparameter_module_approximation(dereference(<
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2032
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+
mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix0_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1593
2033
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return mod
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1594
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-
elif isinstance(slicer, mps.
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2034
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+
elif isinstance(slicer, mps._Slicer_Matrix1_vine_f32):
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1595
2035
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with nogil:
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1596
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-
mod = multiparameter_module_approximation(dereference(<
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2036
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+
mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix1_vine_f32*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1597
2037
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return mod
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1598
2038
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else:
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1599
2039
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raise ValueError(f"Unsupported slicer type {type(slicer)}")
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1600
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-
cdef inline Module[
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2040
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+
cdef inline Module[double] _multiparameter_module_approximation_f64(object slicer, One_critical_filtration[double] direction, double max_error, Box[double] box, bool threshold, bool complete, bool verbose):
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1601
2041
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import multipers.slicer as mps
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1602
2042
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cdef intptr_t slicer_ptr = <intptr_t>(slicer.get_ptr())
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1603
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-
cdef Module[
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2043
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+
cdef Module[double] mod
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1604
2044
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if False:
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1605
2045
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pass
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1606
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-
elif isinstance(slicer, mps.
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2046
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+
elif isinstance(slicer, mps._KSlicer_Matrix0_vine_f64):
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1607
2047
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with nogil:
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1608
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-
mod = multiparameter_module_approximation(dereference(<
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2048
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+
mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix0_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1609
2049
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return mod
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1610
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-
elif isinstance(slicer, mps.
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2050
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+
elif isinstance(slicer, mps._KSlicer_Matrix1_vine_f64):
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1611
2051
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with nogil:
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1612
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-
mod = multiparameter_module_approximation(dereference(<
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2052
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+
mod = multiparameter_module_approximation(dereference(<C_KSlicer_Matrix1_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1613
2053
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return mod
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1614
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-
elif isinstance(slicer, mps.
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2054
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+
elif isinstance(slicer, mps._Slicer_Matrix0_vine_f64):
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1615
2055
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with nogil:
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1616
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-
mod = multiparameter_module_approximation(dereference(<
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2056
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+
mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix0_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1617
2057
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return mod
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1618
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-
elif isinstance(slicer, mps.
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2058
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+
elif isinstance(slicer, mps._Slicer_Matrix1_vine_f64):
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1619
2059
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with nogil:
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1620
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-
mod = multiparameter_module_approximation(dereference(<
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2060
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+
mod = multiparameter_module_approximation(dereference(<C_Slicer_Matrix1_vine_f64*>(slicer_ptr)), direction, max_error, box, threshold, complete, verbose)
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1621
2061
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return mod
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1622
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else:
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1623
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raise ValueError(f"Unsupported slicer type {type(slicer)}")
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@@ -2183,8 +2623,10 @@ cdef extern from "multi_parameter_rank_invariant/hilbert_function.h" namespace "
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2183
2623
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signed_measure_type get_hilbert_signed_measure(C_Slicer_GudhiCohomology0_i64&, tensor_dtype* , const vector[indices_type], const vector[indices_type], bool zero_pad,indices_type n_jobs, bool verbose, bool ignore_inf) except + nogil
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2184
2624
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signed_measure_type get_hilbert_signed_measure(C_Slicer_GudhiCohomology0_f32&, tensor_dtype* , const vector[indices_type], const vector[indices_type], bool zero_pad,indices_type n_jobs, bool verbose, bool ignore_inf) except + nogil
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2185
2625
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signed_measure_type get_hilbert_signed_measure(C_Slicer_GudhiCohomology0_f64&, tensor_dtype* , const vector[indices_type], const vector[indices_type], bool zero_pad,indices_type n_jobs, bool verbose, bool ignore_inf) except + nogil
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2186
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-
cdef inline _compute_hilbert_sm(
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2626
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+
cdef inline _compute_hilbert_sm(slicer, tensor_dtype* container_ptr, vector[indices_type] c_grid_shape, vector[indices_type] degrees, int n_jobs, bool verbose,bool zero_pad, bool ignore_inf):
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2187
2627
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import multipers.slicer as mps
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2628
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if len(slicer) == 0:
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2629
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return (np.empty(shape=(0, 1), dtype=slicer.dtype), np.empty(shape=(0), dtype=int))
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2188
2630
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cdef intptr_t slicer_ptr = <intptr_t>(slicer.get_ptr())
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2189
2631
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cdef signed_measure_type sm
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2190
2632
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cdef cnp.ndarray[indices_type, ndim=2] pts
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@@ -2192,241 +2634,401 @@ cdef inline _compute_hilbert_sm(object slicer, tensor_dtype* container_ptr, vec
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2192
2634
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if isinstance(slicer, mps._KSlicer_Matrix0_vine_i32):
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2193
2635
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with nogil:
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2194
2636
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_vine_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2195
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-
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2196
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-
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2637
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+
if len(sm.first) == 0:
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2638
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2639
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2640
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+
else:
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2641
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2642
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2197
2643
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return (pts,weights)
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2198
2644
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if isinstance(slicer, mps._KSlicer_Matrix1_vine_i32):
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2199
2645
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with nogil:
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2200
2646
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_vine_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2201
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-
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2202
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-
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2647
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+
if len(sm.first) == 0:
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2648
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2649
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2650
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+
else:
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2651
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2652
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2203
2653
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return (pts,weights)
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2204
2654
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if isinstance(slicer, mps._KSlicer_Matrix0_vine_i64):
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2205
2655
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with nogil:
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2206
2656
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_vine_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2207
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-
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2208
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-
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2657
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+
if len(sm.first) == 0:
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2658
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2659
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2660
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+
else:
|
|
2661
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2662
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2209
2663
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return (pts,weights)
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2210
2664
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if isinstance(slicer, mps._KSlicer_Matrix1_vine_i64):
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2211
2665
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with nogil:
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2212
2666
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_vine_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2213
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-
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2214
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-
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|
2667
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+
if len(sm.first) == 0:
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2668
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2669
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2670
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+
else:
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2671
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2672
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2215
2673
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return (pts,weights)
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2216
2674
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if isinstance(slicer, mps._KSlicer_Matrix0_vine_f32):
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2217
2675
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with nogil:
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2218
2676
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_vine_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2219
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-
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2220
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-
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2677
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+
if len(sm.first) == 0:
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2678
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2679
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2680
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+
else:
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2681
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2682
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2221
2683
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return (pts,weights)
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2222
2684
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if isinstance(slicer, mps._KSlicer_Matrix1_vine_f32):
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2223
2685
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with nogil:
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2224
2686
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_vine_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2225
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-
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2226
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-
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2687
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+
if len(sm.first) == 0:
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2689
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2690
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+
else:
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2691
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2692
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2227
2693
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return (pts,weights)
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2228
2694
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if isinstance(slicer, mps._KSlicer_Matrix0_vine_f64):
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2229
2695
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with nogil:
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2230
2696
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_vine_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2231
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-
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2232
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-
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2697
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+
if len(sm.first) == 0:
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pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2699
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2700
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+
else:
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2701
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pts = np.asarray(sm.first,dtype=python_indices_type)
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2702
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2233
2703
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return (pts,weights)
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2234
2704
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if isinstance(slicer, mps._KSlicer_Matrix1_vine_f64):
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2235
2705
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with nogil:
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2236
2706
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sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_vine_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2237
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-
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2238
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-
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2707
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+
if len(sm.first) == 0:
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pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2709
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weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2710
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+
else:
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2711
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pts = np.asarray(sm.first,dtype=python_indices_type)
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2712
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2239
2713
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return (pts,weights)
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2714
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if isinstance(slicer, mps._Slicer_Matrix0_vine_i32):
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2241
2715
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with nogil:
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2242
2716
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sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_vine_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2243
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-
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2244
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-
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2717
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+
if len(sm.first) == 0:
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2719
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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+
else:
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2245
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return (pts,weights)
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if isinstance(slicer, mps._Slicer_Matrix1_vine_i32):
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2247
2725
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with nogil:
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2248
2726
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sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_vine_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2249
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-
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2250
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-
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2727
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+
if len(sm.first) == 0:
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2729
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2730
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+
else:
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2731
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2732
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2251
2733
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return (pts,weights)
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2252
2734
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if isinstance(slicer, mps._Slicer_Matrix0_vine_i64):
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2253
2735
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with nogil:
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2254
2736
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sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_vine_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2255
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-
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2256
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-
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2737
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+
if len(sm.first) == 0:
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2738
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2739
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+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2740
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+
else:
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2741
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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2257
2743
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return (pts,weights)
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2258
2744
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if isinstance(slicer, mps._Slicer_Matrix1_vine_i64):
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2259
2745
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with nogil:
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2260
2746
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sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_vine_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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2261
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-
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2262
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-
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2747
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+
if len(sm.first) == 0:
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2748
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+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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2749
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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2750
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+
else:
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2751
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+
pts = np.asarray(sm.first,dtype=python_indices_type)
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2752
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+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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|
2263
2753
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return (pts,weights)
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|
2264
2754
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if isinstance(slicer, mps._Slicer_Matrix0_vine_f32):
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2265
2755
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with nogil:
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|
2266
2756
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sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_vine_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2267
|
-
|
|
2268
|
-
|
|
2757
|
+
if len(sm.first) == 0:
|
|
2758
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2759
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2760
|
+
else:
|
|
2761
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2762
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2269
2763
|
return (pts,weights)
|
|
2270
2764
|
if isinstance(slicer, mps._Slicer_Matrix1_vine_f32):
|
|
2271
2765
|
with nogil:
|
|
2272
2766
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_vine_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2273
|
-
|
|
2274
|
-
|
|
2767
|
+
if len(sm.first) == 0:
|
|
2768
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2769
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2770
|
+
else:
|
|
2771
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2772
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2275
2773
|
return (pts,weights)
|
|
2276
2774
|
if isinstance(slicer, mps._Slicer_Matrix0_vine_f64):
|
|
2277
2775
|
with nogil:
|
|
2278
2776
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_vine_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2279
|
-
|
|
2280
|
-
|
|
2777
|
+
if len(sm.first) == 0:
|
|
2778
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2779
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2780
|
+
else:
|
|
2781
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2782
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2281
2783
|
return (pts,weights)
|
|
2282
2784
|
if isinstance(slicer, mps._Slicer_Matrix1_vine_f64):
|
|
2283
2785
|
with nogil:
|
|
2284
2786
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_vine_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2285
|
-
|
|
2286
|
-
|
|
2787
|
+
if len(sm.first) == 0:
|
|
2788
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2789
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2790
|
+
else:
|
|
2791
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2792
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2287
2793
|
return (pts,weights)
|
|
2288
2794
|
if isinstance(slicer, mps._KSlicer_Matrix0_i32):
|
|
2289
2795
|
with nogil:
|
|
2290
2796
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2291
|
-
|
|
2292
|
-
|
|
2797
|
+
if len(sm.first) == 0:
|
|
2798
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2799
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2800
|
+
else:
|
|
2801
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2802
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2293
2803
|
return (pts,weights)
|
|
2294
2804
|
if isinstance(slicer, mps._KSlicer_Matrix1_i32):
|
|
2295
2805
|
with nogil:
|
|
2296
2806
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2297
|
-
|
|
2298
|
-
|
|
2807
|
+
if len(sm.first) == 0:
|
|
2808
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2809
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2810
|
+
else:
|
|
2811
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2812
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2299
2813
|
return (pts,weights)
|
|
2300
2814
|
if isinstance(slicer, mps._KSlicer_Matrix0_i64):
|
|
2301
2815
|
with nogil:
|
|
2302
2816
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2303
|
-
|
|
2304
|
-
|
|
2817
|
+
if len(sm.first) == 0:
|
|
2818
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2819
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2820
|
+
else:
|
|
2821
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2822
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2305
2823
|
return (pts,weights)
|
|
2306
2824
|
if isinstance(slicer, mps._KSlicer_Matrix1_i64):
|
|
2307
2825
|
with nogil:
|
|
2308
2826
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2309
|
-
|
|
2310
|
-
|
|
2827
|
+
if len(sm.first) == 0:
|
|
2828
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2829
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2830
|
+
else:
|
|
2831
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2832
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2311
2833
|
return (pts,weights)
|
|
2312
2834
|
if isinstance(slicer, mps._KSlicer_Matrix0_f32):
|
|
2313
2835
|
with nogil:
|
|
2314
2836
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2315
|
-
|
|
2316
|
-
|
|
2837
|
+
if len(sm.first) == 0:
|
|
2838
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2839
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2840
|
+
else:
|
|
2841
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2842
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2317
2843
|
return (pts,weights)
|
|
2318
2844
|
if isinstance(slicer, mps._KSlicer_Matrix1_f32):
|
|
2319
2845
|
with nogil:
|
|
2320
2846
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2321
|
-
|
|
2322
|
-
|
|
2847
|
+
if len(sm.first) == 0:
|
|
2848
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2849
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2850
|
+
else:
|
|
2851
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2852
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2323
2853
|
return (pts,weights)
|
|
2324
2854
|
if isinstance(slicer, mps._KSlicer_Matrix0_f64):
|
|
2325
2855
|
with nogil:
|
|
2326
2856
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix0_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2327
|
-
|
|
2328
|
-
|
|
2857
|
+
if len(sm.first) == 0:
|
|
2858
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2859
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2860
|
+
else:
|
|
2861
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2862
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2329
2863
|
return (pts,weights)
|
|
2330
2864
|
if isinstance(slicer, mps._KSlicer_Matrix1_f64):
|
|
2331
2865
|
with nogil:
|
|
2332
2866
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_Matrix1_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2333
|
-
|
|
2334
|
-
|
|
2867
|
+
if len(sm.first) == 0:
|
|
2868
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2869
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2870
|
+
else:
|
|
2871
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2872
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2335
2873
|
return (pts,weights)
|
|
2336
2874
|
if isinstance(slicer, mps._Slicer_Matrix0_i32):
|
|
2337
2875
|
with nogil:
|
|
2338
2876
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2339
|
-
|
|
2340
|
-
|
|
2877
|
+
if len(sm.first) == 0:
|
|
2878
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2879
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2880
|
+
else:
|
|
2881
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2882
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2341
2883
|
return (pts,weights)
|
|
2342
2884
|
if isinstance(slicer, mps._Slicer_Matrix1_i32):
|
|
2343
2885
|
with nogil:
|
|
2344
2886
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2345
|
-
|
|
2346
|
-
|
|
2887
|
+
if len(sm.first) == 0:
|
|
2888
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2889
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2890
|
+
else:
|
|
2891
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2892
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2347
2893
|
return (pts,weights)
|
|
2348
2894
|
if isinstance(slicer, mps._Slicer_Matrix0_i64):
|
|
2349
2895
|
with nogil:
|
|
2350
2896
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2351
|
-
|
|
2352
|
-
|
|
2897
|
+
if len(sm.first) == 0:
|
|
2898
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2899
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2900
|
+
else:
|
|
2901
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2902
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2353
2903
|
return (pts,weights)
|
|
2354
2904
|
if isinstance(slicer, mps._Slicer_Matrix1_i64):
|
|
2355
2905
|
with nogil:
|
|
2356
2906
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2357
|
-
|
|
2358
|
-
|
|
2907
|
+
if len(sm.first) == 0:
|
|
2908
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2909
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2910
|
+
else:
|
|
2911
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2912
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2359
2913
|
return (pts,weights)
|
|
2360
2914
|
if isinstance(slicer, mps._Slicer_Matrix0_f32):
|
|
2361
2915
|
with nogil:
|
|
2362
2916
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2363
|
-
|
|
2364
|
-
|
|
2917
|
+
if len(sm.first) == 0:
|
|
2918
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2919
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2920
|
+
else:
|
|
2921
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2922
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2365
2923
|
return (pts,weights)
|
|
2366
2924
|
if isinstance(slicer, mps._Slicer_Matrix1_f32):
|
|
2367
2925
|
with nogil:
|
|
2368
2926
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2369
|
-
|
|
2370
|
-
|
|
2927
|
+
if len(sm.first) == 0:
|
|
2928
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2929
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2930
|
+
else:
|
|
2931
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2932
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2371
2933
|
return (pts,weights)
|
|
2372
2934
|
if isinstance(slicer, mps._Slicer_Matrix0_f64):
|
|
2373
2935
|
with nogil:
|
|
2374
2936
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix0_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2375
|
-
|
|
2376
|
-
|
|
2937
|
+
if len(sm.first) == 0:
|
|
2938
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2939
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2940
|
+
else:
|
|
2941
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2942
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2377
2943
|
return (pts,weights)
|
|
2378
2944
|
if isinstance(slicer, mps._Slicer_Matrix1_f64):
|
|
2379
2945
|
with nogil:
|
|
2380
2946
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_Matrix1_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2381
|
-
|
|
2382
|
-
|
|
2947
|
+
if len(sm.first) == 0:
|
|
2948
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2949
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2950
|
+
else:
|
|
2951
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2952
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2383
2953
|
return (pts,weights)
|
|
2384
2954
|
if isinstance(slicer, mps._KSlicer_GudhiCohomology0_i32):
|
|
2385
2955
|
with nogil:
|
|
2386
2956
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_GudhiCohomology0_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2387
|
-
|
|
2388
|
-
|
|
2957
|
+
if len(sm.first) == 0:
|
|
2958
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2959
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2960
|
+
else:
|
|
2961
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2962
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2389
2963
|
return (pts,weights)
|
|
2390
2964
|
if isinstance(slicer, mps._KSlicer_GudhiCohomology0_i64):
|
|
2391
2965
|
with nogil:
|
|
2392
2966
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_GudhiCohomology0_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2393
|
-
|
|
2394
|
-
|
|
2967
|
+
if len(sm.first) == 0:
|
|
2968
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2969
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2970
|
+
else:
|
|
2971
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2972
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2395
2973
|
return (pts,weights)
|
|
2396
2974
|
if isinstance(slicer, mps._KSlicer_GudhiCohomology0_f32):
|
|
2397
2975
|
with nogil:
|
|
2398
2976
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_GudhiCohomology0_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2399
|
-
|
|
2400
|
-
|
|
2977
|
+
if len(sm.first) == 0:
|
|
2978
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2979
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2980
|
+
else:
|
|
2981
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2982
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2401
2983
|
return (pts,weights)
|
|
2402
2984
|
if isinstance(slicer, mps._KSlicer_GudhiCohomology0_f64):
|
|
2403
2985
|
with nogil:
|
|
2404
2986
|
sm = get_hilbert_signed_measure(dereference(<C_KSlicer_GudhiCohomology0_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2405
|
-
|
|
2406
|
-
|
|
2987
|
+
if len(sm.first) == 0:
|
|
2988
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2989
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
2990
|
+
else:
|
|
2991
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
2992
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2407
2993
|
return (pts,weights)
|
|
2408
2994
|
if isinstance(slicer, mps._Slicer_GudhiCohomology0_i32):
|
|
2409
2995
|
with nogil:
|
|
2410
2996
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_GudhiCohomology0_i32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2411
|
-
|
|
2412
|
-
|
|
2997
|
+
if len(sm.first) == 0:
|
|
2998
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
2999
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
3000
|
+
else:
|
|
3001
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
3002
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2413
3003
|
return (pts,weights)
|
|
2414
3004
|
if isinstance(slicer, mps._Slicer_GudhiCohomology0_i64):
|
|
2415
3005
|
with nogil:
|
|
2416
3006
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_GudhiCohomology0_i64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2417
|
-
|
|
2418
|
-
|
|
3007
|
+
if len(sm.first) == 0:
|
|
3008
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
3009
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
3010
|
+
else:
|
|
3011
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
3012
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2419
3013
|
return (pts,weights)
|
|
2420
3014
|
if isinstance(slicer, mps._Slicer_GudhiCohomology0_f32):
|
|
2421
3015
|
with nogil:
|
|
2422
3016
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_GudhiCohomology0_f32*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2423
|
-
|
|
2424
|
-
|
|
3017
|
+
if len(sm.first) == 0:
|
|
3018
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
3019
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
3020
|
+
else:
|
|
3021
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
3022
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2425
3023
|
return (pts,weights)
|
|
2426
3024
|
if isinstance(slicer, mps._Slicer_GudhiCohomology0_f64):
|
|
2427
3025
|
with nogil:
|
|
2428
3026
|
sm = get_hilbert_signed_measure(dereference(<C_Slicer_GudhiCohomology0_f64*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
|
|
2429
|
-
|
|
2430
|
-
|
|
3027
|
+
if len(sm.first) == 0:
|
|
3028
|
+
pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
|
|
3029
|
+
weights = np.empty(shape=(0), dtype=python_tensor_dtype)
|
|
3030
|
+
else:
|
|
3031
|
+
pts = np.asarray(sm.first,dtype=python_indices_type)
|
|
3032
|
+
weights = np.asarray(sm.second,dtype=python_tensor_dtype)
|
|
2431
3033
|
return (pts,weights)
|
|
2432
3034
|
raise ValueError(f"Unsupported slicer type {type(slicer)}")
|