multipers 2.3.0__cp312-cp312-win_amd64.whl → 2.3.2__cp312-cp312-win_amd64.whl

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Files changed (54) hide show
  1. multipers/_signed_measure_meta.py +71 -65
  2. multipers/array_api/__init__.py +39 -0
  3. multipers/array_api/numpy.py +34 -0
  4. multipers/array_api/torch.py +35 -0
  5. multipers/distances.py +6 -2
  6. multipers/{ml/convolutions.py → filtrations/density.py} +67 -13
  7. multipers/filtrations/filtrations.py +76 -17
  8. multipers/function_rips.cp312-win_amd64.pyd +0 -0
  9. multipers/grids.cp312-win_amd64.pyd +0 -0
  10. multipers/grids.pyx +144 -61
  11. multipers/gudhi/Simplex_tree_multi_interface.h +36 -1
  12. multipers/gudhi/gudhi/Multi_persistence/Box.h +3 -0
  13. multipers/gudhi/gudhi/One_critical_filtration.h +18 -9
  14. multipers/gudhi/mma_interface_h0.h +1 -1
  15. multipers/gudhi/mma_interface_matrix.h +10 -1
  16. multipers/gudhi/naive_merge_tree.h +1 -1
  17. multipers/gudhi/truc.h +555 -42
  18. multipers/io.cp312-win_amd64.pyd +0 -0
  19. multipers/io.pyx +26 -93
  20. multipers/ml/mma.py +4 -4
  21. multipers/ml/point_clouds.py +2 -2
  22. multipers/ml/signed_measures.py +63 -65
  23. multipers/mma_structures.cp312-win_amd64.pyd +0 -0
  24. multipers/mma_structures.pxd +2 -1
  25. multipers/mma_structures.pyx +56 -16
  26. multipers/mma_structures.pyx.tp +14 -5
  27. multipers/multiparameter_module_approximation/approximation.h +48 -14
  28. multipers/multiparameter_module_approximation.cp312-win_amd64.pyd +0 -0
  29. multipers/multiparameter_module_approximation.pyx +27 -8
  30. multipers/plots.py +2 -1
  31. multipers/point_measure.cp312-win_amd64.pyd +0 -0
  32. multipers/point_measure.pyx +6 -2
  33. multipers/simplex_tree_multi.cp312-win_amd64.pyd +0 -0
  34. multipers/simplex_tree_multi.pxd +1 -0
  35. multipers/simplex_tree_multi.pyx +632 -146
  36. multipers/simplex_tree_multi.pyx.tp +92 -24
  37. multipers/slicer.cp312-win_amd64.pyd +0 -0
  38. multipers/slicer.pxd +779 -177
  39. multipers/slicer.pxd.tp +24 -5
  40. multipers/slicer.pyx +5657 -1427
  41. multipers/slicer.pyx.tp +211 -48
  42. multipers/tbb12.dll +0 -0
  43. multipers/tbbbind_2_5.dll +0 -0
  44. multipers/tbbmalloc.dll +0 -0
  45. multipers/tbbmalloc_proxy.dll +0 -0
  46. multipers/tensor/tensor.h +1 -1
  47. multipers/tests/__init__.py +9 -4
  48. multipers/torch/diff_grids.py +30 -7
  49. multipers/torch/rips_density.py +1 -1
  50. {multipers-2.3.0.dist-info → multipers-2.3.2.dist-info}/METADATA +4 -25
  51. {multipers-2.3.0.dist-info → multipers-2.3.2.dist-info}/RECORD +54 -51
  52. {multipers-2.3.0.dist-info → multipers-2.3.2.dist-info}/WHEEL +1 -1
  53. {multipers-2.3.0.dist-info → multipers-2.3.2.dist-info/licenses}/LICENSE +0 -0
  54. {multipers-2.3.0.dist-info → multipers-2.3.2.dist-info}/top_level.txt +0 -0
multipers/slicer.pxd.tp CHANGED
@@ -58,7 +58,14 @@ cdef extern from "Persistence_slices_interface.h":
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  {{endif}}
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  {{D['C_TEMPLATE_TYPE']}}& operator=(const {{D['C_TEMPLATE_TYPE']}}&)
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+
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+ pair[{{D['C_TEMPLATE_TYPE']}}, vector[unsigned int]] colexical_rearange() except + nogil
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+ {{D['C_TEMPLATE_TYPE']}} permute(const vector[unsigned int]&) except + nogil
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+
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  vector[vector[pair[{{D['C_VALUE_TYPE']}}, {{D['C_VALUE_TYPE']}}]]] get_barcode() nogil
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+ vector[vector[pair[int,int]]] get_barcode_idx() nogil
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+ vector[vector[vector[pair[int,int]]]] custom_persistences({{D['C_VALUE_TYPE']}}*, int size, bool ignore_inf) except + nogil
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+
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  void push_to(const Line[{{D['C_VALUE_TYPE']}}]&) nogil
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  void set_one_filtration(const vector[{{D['C_VALUE_TYPE']}}]&) nogil
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  int prune_above_dimension(int) except + nogil
@@ -73,6 +80,7 @@ cdef extern from "Persistence_slices_interface.h":
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  pair[One_critical_filtration[{{D['C_VALUE_TYPE']}}], One_critical_filtration[{{D['C_VALUE_TYPE']}}]] get_bounding_box() except + nogil
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  vector[One_critical_filtration[{{D['C_VALUE_TYPE']}}]] get_filtration_values() nogil
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  vector[int] get_dimensions() nogil
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+ int get_dimension(int i) nogil
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  vector[vector[uint]] get_boundaries() nogil
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  void coarsen_on_grid_inplace(vector[vector[{{D['C_VALUE_TYPE']}}]], bool) nogil
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  vector[{{D['FILTRATION_TYPE']}}]& get_filtrations() nogil
@@ -95,8 +103,13 @@ cdef extern from "Persistence_slices_interface.h":
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  {{endif}}
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- vector[vector[vector[pair[{{D['C_VALUE_TYPE']}}, {{D['C_VALUE_TYPE']}}]]]] persistence_on_lines(vector[vector[{{D['C_VALUE_TYPE']}}]]) nogil
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- vector[vector[vector[pair[{{D['C_VALUE_TYPE']}}, {{D['C_VALUE_TYPE']}}]]]] persistence_on_lines(vector[pair[vector[{{D['C_VALUE_TYPE']}}],vector[{{D['C_VALUE_TYPE']}}]]]) nogil
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+ vector[vector[vector[pair[{{D['C_VALUE_TYPE']}}, {{D['C_VALUE_TYPE']}}]]]] persistence_on_lines(vector[vector[{{D['C_VALUE_TYPE']}}]], bool) except + nogil
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+ vector[vector[vector[pair[{{D['C_VALUE_TYPE']}}, {{D['C_VALUE_TYPE']}}]]]] persistence_on_lines(vector[pair[vector[{{D['C_VALUE_TYPE']}}],vector[{{D['C_VALUE_TYPE']}}]]],bool) except + nogil
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+
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+
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+ {{if D['COLUMN_TYPE'] is not None}}
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+ {{D['C_TEMPLATE_TYPE']}} projective_cover_kernel(int dim) except + nogil
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+ {{endif}}
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  {{endfor}}
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@@ -198,8 +211,10 @@ cdef extern from "multi_parameter_rank_invariant/hilbert_function.h" namespace "
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  {{for D in slicers}}
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  signed_measure_type get_hilbert_signed_measure({{D['C_TEMPLATE_TYPE']}}&, tensor_dtype* , const vector[indices_type], const vector[indices_type], bool zero_pad,indices_type n_jobs, bool verbose, bool ignore_inf) except + nogil
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  {{endfor}}
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- cdef inline _compute_hilbert_sm(object slicer, tensor_dtype* container_ptr, vector[indices_type] c_grid_shape, vector[indices_type] degrees, int n_jobs, bool verbose,bool zero_pad, bool ignore_inf):
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+ cdef inline _compute_hilbert_sm(slicer, tensor_dtype* container_ptr, vector[indices_type] c_grid_shape, vector[indices_type] degrees, int n_jobs, bool verbose,bool zero_pad, bool ignore_inf):
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  import multipers.slicer as mps
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+ if len(slicer) == 0:
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+ return (np.empty(shape=(0, 1), dtype=slicer.dtype), np.empty(shape=(0), dtype=int))
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  cdef intptr_t slicer_ptr = <intptr_t>(slicer.get_ptr())
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  cdef signed_measure_type sm
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  cdef cnp.ndarray[indices_type, ndim=2] pts
@@ -208,8 +223,12 @@ cdef inline _compute_hilbert_sm(object slicer, tensor_dtype* container_ptr, vec
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  if isinstance(slicer, mps.{{D['PYTHON_TYPE']}}):
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  with nogil:
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  sm = get_hilbert_signed_measure(dereference(<{{D['C_TEMPLATE_TYPE']}}*>(slicer_ptr)),container_ptr, c_grid_shape,degrees, zero_pad, n_jobs, verbose, ignore_inf)
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- pts = np.asarray(sm.first,dtype=python_indices_type)
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- weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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+ if len(sm.first) == 0:
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+ pts = np.empty(shape=(0, slicer.num_parameters), dtype=python_indices_type)
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+ weights = np.empty(shape=(0), dtype=python_tensor_dtype)
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+ else:
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+ pts = np.asarray(sm.first,dtype=python_indices_type)
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+ weights = np.asarray(sm.second,dtype=python_tensor_dtype)
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  return (pts,weights)
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  {{endfor}}
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  raise ValueError(f"Unsupported slicer type {type(slicer)}")