multipers 2.3.0__cp310-cp310-win_amd64.whl → 2.3.1__cp310-cp310-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- multipers/{ml/convolutions.py → filtrations/density.py} +45 -2
- multipers/filtrations/filtrations.py +2 -2
- multipers/function_rips.cp310-win_amd64.pyd +0 -0
- multipers/grids.cp310-win_amd64.pyd +0 -0
- multipers/gudhi/Simplex_tree_multi_interface.h +1 -1
- multipers/gudhi/gudhi/One_critical_filtration.h +2 -1
- multipers/gudhi/mma_interface_h0.h +1 -1
- multipers/gudhi/mma_interface_matrix.h +8 -1
- multipers/gudhi/naive_merge_tree.h +1 -1
- multipers/gudhi/truc.h +82 -15
- multipers/io.cp310-win_amd64.pyd +0 -0
- multipers/io.pyx +14 -11
- multipers/ml/point_clouds.py +2 -2
- multipers/ml/signed_measures.py +3 -3
- multipers/mma_structures.cp310-win_amd64.pyd +0 -0
- multipers/mma_structures.pyx +0 -4
- multipers/mma_structures.pyx.tp +0 -2
- multipers/multiparameter_module_approximation/approximation.h +4 -2
- multipers/multiparameter_module_approximation.cp310-win_amd64.pyd +0 -0
- multipers/multiparameter_module_approximation.pyx +3 -1
- multipers/plots.py +1 -1
- multipers/point_measure.cp310-win_amd64.pyd +0 -0
- multipers/simplex_tree_multi.cp310-win_amd64.pyd +0 -0
- multipers/simplex_tree_multi.pyx +97 -33
- multipers/simplex_tree_multi.pyx.tp +13 -5
- multipers/slicer.cp310-win_amd64.pyd +0 -0
- multipers/slicer.pxd +220 -100
- multipers/slicer.pxd.tp +5 -2
- multipers/slicer.pyx +484 -204
- multipers/slicer.pyx.tp +16 -9
- multipers/tensor/tensor.h +1 -1
- multipers/torch/rips_density.py +1 -1
- {multipers-2.3.0.dist-info → multipers-2.3.1.dist-info}/METADATA +1 -1
- {multipers-2.3.0.dist-info → multipers-2.3.1.dist-info}/RECORD +37 -37
- {multipers-2.3.0.dist-info → multipers-2.3.1.dist-info}/WHEEL +1 -1
- {multipers-2.3.0.dist-info → multipers-2.3.1.dist-info}/LICENSE +0 -0
- {multipers-2.3.0.dist-info → multipers-2.3.1.dist-info}/top_level.txt +0 -0
multipers/slicer.pyx.tp
CHANGED
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@@ -215,6 +215,13 @@ cdef class {{D['PYTHON_TYPE']}}:
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self.minpres_degree = -1
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{{endif}}
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def to_colexical(self)->{{D['PYTHON_TYPE']}}:
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assert not self.is_squeezed, "Unsqueeze first"
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new_slicer = {{D['PYTHON_TYPE']}}()
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new_slicer.truc = self.truc.colexical_rearange()
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new_slicer.minpres_degree = self.minpres_degree
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return new_slicer
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def copy(self)->{{D['PYTHON_TYPE']}}:
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"""
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Returns a copy of the slicer.
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@@ -258,7 +265,7 @@ cdef class {{D['PYTHON_TYPE']}}:
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direction = 1 if direction is None else np.asarray(direction)[None,None,:]
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return tuple(bc[:,:,None]*direction + basepoint for bc in bcs)
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-
def persistence_on_line(self,basepoint,direction=None, bool keep_inf=True, bool full=False):
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def persistence_on_line(self,basepoint,direction=None, bool keep_inf=True, bool full=False, bool ignore_infinite_filtration_values = True):
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"""
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Computes the persistence on a line L defined by
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- a basepoint (num_parameters,) array
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@@ -267,7 +274,7 @@ cdef class {{D['PYTHON_TYPE']}}:
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Warning: This is not parallelizable. Use `persitence_on_lines`.
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"""
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self.push_to_line(basepoint,direction)
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self.truc.compute_persistence()
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self.truc.compute_persistence(ignore_infinite_filtration_values)
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if keep_inf:
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bcs = tuple(np.asarray(stuff, dtype = {{D['PY_VALUE_TYPE']}}) for stuff in self.truc.get_barcode())
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else:
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@@ -277,7 +284,7 @@ cdef class {{D['PYTHON_TYPE']}}:
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bcs = {{D['PYTHON_TYPE']}}._bc_to_full(bcs, basepoint, direction)
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return bcs
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def persistence_on_lines(self, basepoints=None, directions=None, bool keep_inf=True, bool full=False):
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def persistence_on_lines(self, basepoints=None, directions=None, bool keep_inf=True, bool full=False, bool ignore_infinite_filtration_values = True):
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"""
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Same as `persistence_on_line`, but with vineyards operation between
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lines if `self.is_vine`, and in parallel otherwise.
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@@ -288,11 +295,11 @@ cdef class {{D['PYTHON_TYPE']}}:
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if directions is None:
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c_basepoints = basepoints
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with nogil:
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c_out = self.truc.persistence_on_lines(c_basepoints)
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c_out = self.truc.persistence_on_lines(c_basepoints, ignore_infinite_filtration_values)
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else:
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c_truc = zip(basepoints,directions)
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with nogil:
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c_out = self.truc.persistence_on_lines(c_truc)
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c_out = self.truc.persistence_on_lines(c_truc, ignore_infinite_filtration_values)
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cdef int num_bc = c_basepoints.size()
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if keep_inf:
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@@ -636,9 +643,9 @@ def from_function_delaunay(
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backend : slicer backend, e.g. "matrix", "clement"
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vineyard : bool, use a vineyard-compatible backend
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"""
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from multipers.io import
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from multipers.io import _check_available, function_delaunay_presentation_to_slicer
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s = multipers.Slicer(None, backend=backend, vineyard=vineyard, dtype=dtype)
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assert _check_available("function_delaunay"), f"Could not find function_delaunay"
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function_delaunay_presentation_to_slicer(s, points, grades, degree=degree, verbose=verbose,clear=clear)
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if degree >= 0:
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s.minpres_degree = degree
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and returns it as a slicer.
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Backends differents than `mpfree` are unstable.
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"""
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from multipers.io import
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from multipers.io import _check_available, input_path, scc_reduce_from_str_to_slicer
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if is_slicer(slicer) and slicer.is_minpres and not force:
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from warnings import warn
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warn(f"The slicer seems to be already reduced, from homology of degree {slicer.minpres_degree}.")
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return slicer
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assert _check_available(backend), f"Backend {backend} is not available."
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if len(degrees)>0:
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def todo(int degree):
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return minimal_presentation(slicer, degree=degree, backend=backend, slicer_backend=slicer_backend, vineyard=vineyard, id=id, **minpres_kwargs)
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multipers/tensor/tensor.h
CHANGED
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@@ -583,7 +583,7 @@ class static_tensor_view_view
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// }
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// }
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template <typename T = std::initializer_list<indices_type>>
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inline dtype &operator[](T coords) {
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inline dtype &operator[]([[maybe_unused]] T coords) {
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throw std::logic_error("Not yet implemented");
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// this->compute_cum_res();
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// assert(this->cum_resolution_view.size() == coords.size());
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multipers/torch/rips_density.py
CHANGED
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@@ -5,7 +5,7 @@ import torch
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import gudhi as gd
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import multipers as mp
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from multipers.
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from multipers.filtrations.density import DTM, KDE
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from multipers.simplex_tree_multi import _available_strategies
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from multipers.torch.diff_grids import get_grid
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Metadata-Version: 2.2
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Name: multipers
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Version: 2.3.
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Version: 2.3.1
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Summary: Multiparameter Topological Persistence for Machine Learning
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Author-email: David Loiseaux <david.lapous@proton.me>, Hannah Schreiber <hannah.schreiber@inria.fr>
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Maintainer-email: David Loiseaux <david.lapous@proton.me>
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@@ -5,32 +5,32 @@ multipers/distances.py,sha256=am3_SqSkGB9N59grxb_EZt-KYqqKln0WiR4Wia6N_LA,6067
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multipers/filtration_conversions.pxd,sha256=Je7a3F4zS1PQn6Ul1YCXgA6p39X2FouStru-XtN-aOw,10800
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multipers/filtration_conversions.pxd.tp,sha256=_9tUvZVUA7J_RUM3q7BxY48fYgDHCUA7Xhy4nBfLLs0,3309
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multipers/filtrations.pxd,sha256=08ONkZNCjs8Nme8lcD9myPz-K662sA-EDpSwzgC2_ts,9461
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multipers/function_rips.cp310-win_amd64.pyd,sha256=
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multipers/function_rips.cp310-win_amd64.pyd,sha256=UnI0zfUD7t-0IN3aAmTSnpP48VCEPAMvqVyrEHLI9W8,344576
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multipers/function_rips.pyx,sha256=j5NjbK3YrAv_2s8YHB1JB0k6m9NC7RQCSFlJe-w_kgE,5252
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multipers/grids.cp310-win_amd64.pyd,sha256=
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multipers/grids.cp310-win_amd64.pyd,sha256=nCvY11ThFvYlOfeyOq9RZHuLpLqJN_nWdaoqEb3NBZk,501248
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multipers/grids.pyx,sha256=uYVue79CiUK1yiL3kHI9h9lx3w1atZZx1KmWE7lYGp0,13733
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multipers/io.cp310-win_amd64.pyd,sha256=
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multipers/io.pyx,sha256=
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multipers/mma_structures.cp310-win_amd64.pyd,sha256=
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multipers/io.cp310-win_amd64.pyd,sha256=RfPRuYn_-VaBFxyEpX-WN2eW4WzWgx09N-PTkbskzyc,260608
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multipers/io.pyx,sha256=cKCmkaurybQ_a1evQFTtONIjAUGYwhx8KhYdPkDhjvE,25482
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multipers/mma_structures.cp310-win_amd64.pyd,sha256=gGpWjX5cqVcYPiiv-eM3zYoSW5em4pUrPqRZBzRtmp4,1321472
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multipers/mma_structures.pxd,sha256=u-t_xEsLUYwLFt1v3TzKN8AcrP1V02pQRpYDw7PLpYw,6499
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multipers/mma_structures.pyx,sha256=
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multipers/mma_structures.pyx.tp,sha256=
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multipers/mma_structures.pyx,sha256=RZWdsKBtB2cHDH9-jwUtDMPd968eCmp921Wu6BZZgow,108578
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multipers/mma_structures.pyx.tp,sha256=CW67g5yfG5UETdTfr-7PiTwDRkA-JteyJaPyeOrr970,42060
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multipers/multiparameter_edge_collapse.py,sha256=MFt0eKQQSv2354omeIqOmzASYTKIMsYdxZHFZauQr8g,1229
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multipers/multiparameter_module_approximation.cp310-win_amd64.pyd,sha256=
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multipers/multiparameter_module_approximation.pyx,sha256=
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multipers/multiparameter_module_approximation.cp310-win_amd64.pyd,sha256=At4fUXmfQ__aT4D_M7qVM27lfV6GVN8AA8kcB6lvUCI,474112
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multipers/multiparameter_module_approximation.pyx,sha256=RAsN76_FNMtUUVqbTMU-Tpf5G8_OeZn_gslP7IWODiI,8611
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multipers/pickle.py,sha256=YYVt4iHiD16E1x5Yn_4mX6P5P8rKi56pNGjJo5IzPhc,2579
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multipers/plots.py,sha256=
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multipers/point_measure.cp310-win_amd64.pyd,sha256=
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multipers/plots.py,sha256=_h4-fVYIu5TXkjmeQypMxthkRhl2be_hQvc8Pg1hnlc,11136
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multipers/point_measure.cp310-win_amd64.pyd,sha256=zxrm7bnS8TAX5zSjK5Dq37c_pLgtJEVZUPlJzif1bUE,614400
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multipers/point_measure.pyx,sha256=7IjakgrAmGVv57MBb8BEHRwsSGxJgxTu_Iar6zOW2_A,11951
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multipers/simplex_tree_multi.cp310-win_amd64.pyd,sha256=
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multipers/simplex_tree_multi.cp310-win_amd64.pyd,sha256=_EgneZ8OwxuBvN36pdYUFGjtFUgrSknUCneCVkY1mqE,3619328
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multipers/simplex_tree_multi.pxd,sha256=B7beQwO_qgbxF_xK55B0ics3cW_REktm7cXY2Vl3NqY,6559
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multipers/simplex_tree_multi.pyx,sha256=
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multipers/simplex_tree_multi.pyx.tp,sha256=
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multipers/slicer.cp310-win_amd64.pyd,sha256=
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multipers/slicer.pxd,sha256=
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multipers/slicer.pxd.tp,sha256=
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multipers/slicer.pyx,sha256=
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multipers/slicer.pyx.tp,sha256=
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multipers/simplex_tree_multi.pyx,sha256=mQ51gpmRBWR-0VhWqA0A3yI4TXmD53w7Omn-IpNF4VM,481685
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multipers/simplex_tree_multi.pyx.tp,sha256=xHFikEmTFtTRyZqiF94Ma81f7Y_NyD7NHi1PflrOu8Q,86960
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multipers/slicer.cp310-win_amd64.pyd,sha256=JpA0I0a8pKRgWqTXeu9GAUNc0YUF5vw-aq4pJeGiarc,8731136
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multipers/slicer.pxd,sha256=7IK4Bf4kP04UZOZj5iCzY3Z60HamMHiMJcWEXEc3_8k,160250
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multipers/slicer.pxd.tp,sha256=WdNAzZaxxfwro8puyZkZMjZl4ugsYpjBdDKWgNallNA,9457
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multipers/slicer.pyx,sha256=FXFZhHS2oEpMxKTPAas59i0nePHniy5oLDomaru3L7A,714555
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multipers/slicer.pyx.tp,sha256=WiWOwZ5-R510ftEvCaNEQ6ekNSN_S9dRiIDbTkGXCYA,37913
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multipers/tbb12.dll,sha256=jutngDNBx2TW92tVYsfuHD8Sre0oO-rh4iK2edc1SGA,337920
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multipers/tbbbind_2_5.dll,sha256=-ywrB_hirPeygmtj_VhROzkQcw70G94x4JTgBdkUaUQ,23040
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multipers/tbbmalloc.dll,sha256=4uOK-Y2zeptYOLEh1bu-Yz8htiG4gtF_agyanMJO-tA,112640
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@@ -47,17 +47,18 @@ multipers/data/pytorch2simplextree.py,sha256=cvOJTUleK_qEbcpygRD77GuQl_0qDsSjjD6
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multipers/data/shape3d.py,sha256=AE-vvjKrhKxOwMo-lurUsFqqLjIg5obo-RTbRZF_5Mk,3893
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multipers/data/synthetic.py,sha256=RvLWIBE5j99kJSt-D7cnPGI3c7skD4p8_qofJbMIXM0,3078
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multipers/filtrations/__init__.py,sha256=Lg0EHe2cxT32UQAg0kr_Vpua-xPBZxGol8VIfz8UwWk,319
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multipers/filtrations/
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multipers/filtrations/density.py,sha256=p-p-qSmrwVvolXkAZrf35XIus6mN-dF1CHNuEd7JGGQ,19272
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multipers/filtrations/filtrations.py,sha256=GY_JIkVfRwP71-BN79ac0Pn4tpniLtIkOcqCJCG-23w,10899
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multipers/gudhi/Persistence_slices_interface.h,sha256=QnUeCCKi9K8CfqI3W5i3Ra1Jy2Z1IIivr3MIpnBsnYU,6562
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multipers/gudhi/Simplex_tree_interface.h,sha256=kkq8pE3jKGLY1dK7sYpb_uERHaWGurrRXfaw_ygs-mY,10217
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multipers/gudhi/Simplex_tree_multi_interface.h,sha256=
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multipers/gudhi/Simplex_tree_multi_interface.h,sha256=kDardleivWhlkEC9HSPDM75WPbnEW3IUur_BEiWeJ4U,23529
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multipers/gudhi/cubical_to_boundary.h,sha256=ELRnPe8czj9XlGNb2fLszu7EzU6itgS2vq03eVP31aU,1955
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multipers/gudhi/mma_interface_coh.h,sha256=JljD7lVwxxywxjgbK3PU4FZhLK9XUuEXuWOPDQvURWI,8433
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multipers/gudhi/mma_interface_h0.h,sha256=
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multipers/gudhi/mma_interface_matrix.h,sha256=
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multipers/gudhi/naive_merge_tree.h,sha256=
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multipers/gudhi/mma_interface_h0.h,sha256=puuKUcEndfv6012bSf1r0KVIJTvcsH2FOKLYc5oLwSg,7596
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multipers/gudhi/mma_interface_matrix.h,sha256=SHCN4DDS5W7FQ0v07giolsisTzBtA3R1nfE4Spo9i6A,11080
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multipers/gudhi/naive_merge_tree.h,sha256=iYrizGLZgCm_Dr-eNp4avfHLnXtyzlEslpzME4XPfek,18854
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multipers/gudhi/scc_io.h,sha256=KB-j1CQGbJ9VLeh5VUJN9GbhxDTwbEv0Q3pQzYLjzkY,11507
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multipers/gudhi/truc.h,sha256=
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multipers/gudhi/gudhi/Bitmap_cubical_complex.h,sha256=EdKBo5TQM8tCvap6_Lw2w-2kDOx4p10tQRXqKYcUs28,16159
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multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h,sha256=62rgpvCQhAA7hpKSxRAKDO9uLZK2txxjf953kQA56eM,44544
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multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h,sha256=TJTN_RWANVEl5A4NeZYAfVzwLiP474J1vl16Pn1QqJE,25829
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multipers/gudhi/gudhi/Matrix.h,sha256=bxCmhdWbxATmrw36GgKkIgZZM9xkCZPz4cJNNDG8qoI,115997
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multipers/gudhi/gudhi/Multi_critical_filtration.h,sha256=RDbMBMJtccxX1EtM59bVgL7uucjUUvFZhYb23kphpV8,42589
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multipers/gudhi/gudhi/Off_reader.h,sha256=Owwc7wgQzOgq4URfA3V5c9v_8IY6ODKXeZefjFk8Kok,4871
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multipers/gudhi/gudhi/Persistent_cohomology.h,sha256=UEy1ae9YBamWICDwA120lolIYlt14ExZjr7VFJZaCzI,30725
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multipers/gudhi/gudhi/Points_off_io.h,sha256=kdLw8d8c-zwLl-l5W7BE4lhTLr40FV4gkGo33sU-tbs,5226
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multipers/gudhi/gudhi/Simple_object_pool.h,sha256=Dc_bn6g5rCMg_wZtKNzueJPKfFh1SI-QO-HKAI_74jM,1809
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multipers/ml/convolutions.py,sha256=3RQsITZOlpMq_j3v0ZozraINUTTSx9zE55kxmc4Vf-Y,17864
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multipers/ml/signed_measures.py,sha256=5uZf00gLqaOkWZ13rXW5H32bicnHm9-BedBYY7hayA0,58206
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multipers/ml/sliced_wasserstein.py,sha256=jgq4ND3EWwwJBopqRvfJLsoOptiMHjS3zEAENBmPJDc,18644
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multipers/multi_parameter_rank_invariant/diff_helpers.h,sha256=wMCOhAewWd6-lulLND0y8M0MZoru6zn_8J3qfXDjLds,3477
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multipers/multi_parameter_rank_invariant/persistence_slices.h,sha256=oVMsNkn_VB5lQ_2qsKw5ydPoHnMuGbtvrIN_ga7XnGQ,5986
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multipers/multiparameter_module_approximation/combinatory.h,sha256=Ck-VKQ56wsXCgQvIbpfTnBOweSBRm4rnChLfHf6JWlc,3605
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multipers/multiparameter_module_approximation/debug.h,sha256=yy7miaqw-Lj8u1yMB9HmtJL02abf3K6JlqS6LbkUVfI,2692
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multipers/multiparameter_module_approximation/euler_curves.h,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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multipers/multiparameter_module_approximation/vineyards.h,sha256=6wN_k4CFO1BCVoT8Cc60Wi__v4C2bvFec7rpq-GPb4w,14694
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multipers/multiparameter_module_approximation/vineyards_trajectories.h,sha256=ZZ4E0gmmuHNyUD_rKioISrlWhHNLW_dhlsCWGvzHW2o,25292
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multipers/tests/__init__.py,sha256=19BXYlQxgBzj7OpMP6v6JYNZZi2y9afvD1Wvodwcb1E,1656
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multipers-2.3.1.dist-info/LICENSE,sha256=UsQRnvlo_9wpQS9DNt52GEraERHwK2GIRwuqr2Yv5JI,1071
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multipers-2.3.1.dist-info/METADATA,sha256=gN2bFiv-a8tAkXkhfrX95eZAbNSaZtMEhGtpNsgYrA0,10945
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multipers-2.3.1.dist-info/WHEEL,sha256=gMSPBFjPynvgFG2ofmeEoM1Uf9iH_GsJd2JBy-bxpiQ,101
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multipers-2.3.1.dist-info/top_level.txt,sha256=L9e0AGmhRzrNw9FpuUx-zlqi5NcBOmrI9wYY8kYWr8A,10
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