msw-tasks-core 0.2.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- msw_tasks_core-0.2.0.dist-info/METADATA +65 -0
- msw_tasks_core-0.2.0.dist-info/RECORD +25 -0
- msw_tasks_core-0.2.0.dist-info/WHEEL +4 -0
- msw_tasks_core-0.2.0.dist-info/entry_points.txt +13 -0
- msw_tasks_core-0.2.0.dist-info/licenses/LICENSE +0 -0
- murineshiftwork/_version.py +24 -0
- murineshiftwork/tasks/_calibration_liquid_dynamic/__init__.py +0 -0
- murineshiftwork/tasks/_calibration_liquid_dynamic/task.py +660 -0
- murineshiftwork/tasks/_calibration_liquid_dynamic/task.yaml +47 -0
- murineshiftwork/tasks/_calibration_liquid_static/task.py +214 -0
- murineshiftwork/tasks/_calibration_liquid_static/task.yaml +23 -0
- murineshiftwork/tasks/_calibration_sound_latency/task.py +90 -0
- murineshiftwork/tasks/_test_barcode_iti/task.py +168 -0
- murineshiftwork/tasks/_test_barcode_iti/task.yaml +15 -0
- murineshiftwork/tasks/_test_bpod_connect/task.py +54 -0
- murineshiftwork/tasks/_test_bpod_connect/task.yaml +2 -0
- murineshiftwork/tasks/_test_flush_valves/task.py +77 -0
- murineshiftwork/tasks/_test_flush_valves/task.yaml +27 -0
- murineshiftwork/tasks/_test_minimal_task/task.py +49 -0
- murineshiftwork/tasks/_test_pulsepal_connect/task.py +52 -0
- murineshiftwork/tasks/_test_pulsepal_connect/task.yaml +3 -0
- murineshiftwork/tasks/_test_stage_move/task.py +196 -0
- murineshiftwork/tasks/_test_ttl_barcodes/task.py +89 -0
- murineshiftwork/tasks/_test_ttl_outputs/task.py +48 -0
- murineshiftwork/tasks/_test_video/task.py +111 -0
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Metadata-Version: 2.4
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Name: msw-tasks-core
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Version: 0.2.0
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Summary: Murine Shift Work core tasks: liquid/sound calibration and hardware test protocols.
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Author-email: "Lars B. Rollik" <lars@rollik.me>
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License-File: LICENSE
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Requires-Python: >=3.12
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Requires-Dist: msw-core>=0.1.0
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Requires-Dist: numpy
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Requires-Dist: one-axis-stage
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Requires-Dist: pybpod-api
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Requires-Dist: pyyaml
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Requires-Dist: tqdm
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Provides-Extra: dev
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Requires-Dist: commitizen; extra == 'dev'
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Requires-Dist: mypy; extra == 'dev'
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Requires-Dist: pre-commit; extra == 'dev'
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Requires-Dist: pytest; extra == 'dev'
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Requires-Dist: pytest-cov; extra == 'dev'
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Requires-Dist: ruff; extra == 'dev'
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Provides-Extra: docs
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Requires-Dist: mkdocs-material; extra == 'docs'
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Requires-Dist: mkdocstrings[python]; extra == 'docs'
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Description-Content-Type: text/markdown
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# msw-tasks-core
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Core task set for [Murine Shift Work](https://github.com/MurineShiftWork/murineshiftwork):
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liquid and sound calibration protocols, plus minimal hardware test tasks.
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Installs as a namespace contributor to `murineshiftwork.tasks.*`.
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Tasks are discoverable by the `msw` CLI via both namespace path scan and `msw.tasks` entry points.
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## Installation
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```bash
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pip install msw-tasks-core
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```
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Requires `murineshiftwork` to be installed.
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## Tasks included
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**Calibration**
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- `_calibration_liquid_dynamic` - dynamic liquid volume calibration
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- `_calibration_liquid_static` - static liquid volume calibration
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- `_calibration_sound_latency` - sound output latency measurement
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**Hardware tests**
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- `_test_bpod_connect` - verify Bpod serial connection
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- `_test_flush_valves` - flush all Bpod valve ports
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- `_test_minimal_task` - minimal state-machine smoke test
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- `_test_pulsepal_connect` - verify PulsePal connection
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- `_test_stage_move` - exercise one-axis stage movement
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- `_test_ttl_barcodes` - TTL barcode encoding/decoding test
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- `_test_ttl_outputs` - BNC TTL output test
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- `_test_barcode_iti` - barcode-in-ITI timing test
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- `_test_video` - video acquisition smoke test
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## Development
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```bash
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# from workspace root
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uv sync
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```
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murineshiftwork/_version.py,sha256=s9U3X54Pdr-Jlh9GP6LBaa_VRos7qs_wtrVefUHHNIA,520
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murineshiftwork/tasks/_calibration_liquid_dynamic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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murineshiftwork/tasks/_calibration_liquid_dynamic/task.py,sha256=ZHGP65BQRRYub9t29Z9MG00utTZwT-FBP1gv2aTuFSM,24522
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murineshiftwork/tasks/_calibration_liquid_dynamic/task.yaml,sha256=p_ZptfQrWCXVkyFOv3fZUxt6Y0BevnowTs2cnYkEse8,1711
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murineshiftwork/tasks/_calibration_liquid_static/task.py,sha256=OG_CDuKhpH9aBkmm4cWJnDbuA8ZYcJWYsHGXi6Q2UwU,8495
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murineshiftwork/tasks/_calibration_liquid_static/task.yaml,sha256=2C-mDGl8Kp9JJQs1Pt6YMw6udhttuuIUybarIt4UJP8,594
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murineshiftwork/tasks/_calibration_sound_latency/task.py,sha256=dM7ZPx7uDPtNEMSTYCoyCeb0UbQUD_hLEe2TlCqWNG0,2967
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murineshiftwork/tasks/_test_barcode_iti/task.py,sha256=dFLoUCqXWjRCCkAzT3XOvlwOvJKZJHaeEXiV1CMNWzo,5962
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murineshiftwork/tasks/_test_barcode_iti/task.yaml,sha256=WGbviPrIpKnatzpzROjRo1NnQQSsh6x99qWauk5Zf2A,303
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murineshiftwork/tasks/_test_bpod_connect/task.py,sha256=IWkhxmSojnFAQPqISjkpHhczgTHbCfweBe-OmOu6zvw,1752
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murineshiftwork/tasks/_test_bpod_connect/task.yaml,sha256=b2MG3UxjuhyA5uaXp1rfoJqv1E7bdtx9A_N2qCyjiPo,26
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murineshiftwork/tasks/_test_flush_valves/task.py,sha256=ikkqI-QfhWBSFK7TH3NY-P3sZYKDTuy-56na7TEHaq8,2772
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murineshiftwork/tasks/_test_flush_valves/task.yaml,sha256=ij9Wtk8Iu4RqXG2uDYAoHfcOmLHREJPBVe6FskxbDTE,661
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murineshiftwork/tasks/_test_minimal_task/task.py,sha256=jKBeEFxjza1ndzpWN-dbzfidrw7FQWpC8AnH3RgqLxU,1350
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murineshiftwork/tasks/_test_pulsepal_connect/task.py,sha256=G8VgCJNeE367JWPBg4ymgOcmdreICliLQzaG-P1s_TQ,1591
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murineshiftwork/tasks/_test_pulsepal_connect/task.yaml,sha256=0oh-s9rq7upifZdG95XCGrO7WHFSu37rpfn9EgAAOjs,44
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murineshiftwork/tasks/_test_stage_move/task.py,sha256=tMZg9N4aKqNZMXSNdhm5M83Umoj9TYmmB_jLnpZroZ4,6623
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murineshiftwork/tasks/_test_ttl_barcodes/task.py,sha256=OAvmYP5waQ0XhS5ILfXRFn1L5MBYSZHeX1OQw9Ufayo,2684
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murineshiftwork/tasks/_test_ttl_outputs/task.py,sha256=togHr6rpial7Y2mtMU5y8qY7Xs8YUWNQKHoOUHaM_Ko,1291
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murineshiftwork/tasks/_test_video/task.py,sha256=o8YxDUjE6FIowstSZWG79PVohtyZW-AobdQ-akb04XU,3419
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msw_tasks_core-0.2.0.dist-info/METADATA,sha256=tjRmq0VRfQ77FhFRcUd2KoZa-QUDGZ0WMrXBOArTi80,2059
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msw_tasks_core-0.2.0.dist-info/WHEEL,sha256=mffPy8wBnZQn2VnJUU5jE99KsxaSfiyMHV9Yt0aLVxs,87
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msw_tasks_core-0.2.0.dist-info/entry_points.txt,sha256=tidqENs1bORoEHrnCoSsN_CWJiQq8guvD5RMspFPs5o,852
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msw_tasks_core-0.2.0.dist-info/licenses/LICENSE,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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msw_tasks_core-0.2.0.dist-info/RECORD,,
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[msw.tasks]
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_calibration_liquid_dynamic = murineshiftwork.tasks._calibration_liquid_dynamic.task
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_calibration_liquid_static = murineshiftwork.tasks._calibration_liquid_static.task
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_calibration_sound_latency = murineshiftwork.tasks._calibration_sound_latency.task
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_test_barcode_iti = murineshiftwork.tasks._test_barcode_iti.task
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_test_bpod_connect = murineshiftwork.tasks._test_bpod_connect.task
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_test_flush_valves = murineshiftwork.tasks._test_flush_valves.task
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_test_minimal_task = murineshiftwork.tasks._test_minimal_task.task
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_test_pulsepal_connect = murineshiftwork.tasks._test_pulsepal_connect.task
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_test_stage_move = murineshiftwork.tasks._test_stage_move.task
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_test_ttl_barcodes = murineshiftwork.tasks._test_ttl_barcodes.task
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_test_ttl_outputs = murineshiftwork.tasks._test_ttl_outputs.task
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_test_video = murineshiftwork.tasks._test_video.task
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# file generated by vcs-versioning
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# don't change, don't track in version control
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from __future__ import annotations
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__all__ = [
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"__version__",
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"__version_tuple__",
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"version",
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"version_tuple",
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"__commit_id__",
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"commit_id",
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]
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version: str
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__version__: str
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__version_tuple__: tuple[int | str, ...]
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version_tuple: tuple[int | str, ...]
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commit_id: str | None
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__commit_id__: str | None
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__version__ = version = '0.2.0'
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__version_tuple__ = version_tuple = (0, 2, 0)
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__commit_id__ = commit_id = None
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