msreport 0.0.33__py3-none-any.whl → 0.0.34__py3-none-any.whl

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Files changed (6) hide show
  1. msreport/__init__.py +1 -1
  2. msreport/analyze.py +2 -2
  3. {msreport-0.0.33.dist-info → msreport-0.0.34.dist-info}/METADATA +1 -1
  4. {msreport-0.0.33.dist-info → msreport-0.0.34.dist-info}/RECORD +6 -6
  5. {msreport-0.0.33.dist-info → msreport-0.0.34.dist-info}/WHEEL +0 -0
  6. {msreport-0.0.33.dist-info → msreport-0.0.34.dist-info}/licenses/LICENSE.txt +0 -0
msreport/__init__.py CHANGED
@@ -3,7 +3,7 @@ from msreport.fasta import import_protein_database
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  from msreport.qtable import Qtable
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  from msreport.reader import FragPipeReader, MaxQuantReader, SpectronautReader
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- __version__ = "0.0.33"
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+ __version__ = "0.0.34"
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  __all__ = [
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  "analyze",
msreport/analyze.py CHANGED
@@ -672,7 +672,7 @@ def calculate_multi_group_limma(
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  experiment_pair = [r_to_experiment[s] for s in r_comparison_group.split("-")]
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  comparison_group = comparison_tag.join(experiment_pair)
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  mapping = {col: f"{col} {comparison_group}" for col in limma_result.columns}
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- limma_result = limma_result.rename(columns=mapping)
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+ limma_results[r_comparison_group] = limma_result.rename(columns=mapping)
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  limma_table = pd.DataFrame(index=table.index)
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  limma_table = limma_table.join(list(limma_results.values()))
@@ -790,7 +790,7 @@ def calculate_two_group_limma(
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  if batch:
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  design_df = qtable.get_design().set_index("Sample")
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  batch_groups = [str(design_df.loc[s, "Batch"]) for s in table.columns]
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- print(table[mask])
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+
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  # Note that the order of experiments for calling limma is reversed
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  limma_result = msreport.rinterface.two_group_limma(
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  table[mask],
{msreport-0.0.33.dist-info → msreport-0.0.34.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: msreport
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- Version: 0.0.33
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+ Version: 0.0.34
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  Summary: Post processing and analysis of quantitative proteomics data
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  Project-URL: homepage, https://github.com/hollenstein/msreport
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  Project-URL: documentation, https://hollenstein.github.io/msreport/
{msreport-0.0.33.dist-info → msreport-0.0.34.dist-info}/RECORD RENAMED
@@ -1,5 +1,5 @@
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- msreport/__init__.py,sha256=NwOJ59aWwUhcX8FdYu4ta66Rg2eM1u21JYG4E6C6F0k,493
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- msreport/analyze.py,sha256=UX12dPiAUD5BkmEwGaJI417BpMGfyidmu7SYfW1hSns,50454
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+ msreport/__init__.py,sha256=RR2F_UD3tAWL2qg0ZeCwaiNJfelzcMusKREp_oZyAZE,493
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+ msreport/analyze.py,sha256=5R6WcpYz-YDz3iSGGBs_-e8OJp2taI9ZGuXMAstKgj8,50453
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  msreport/errors.py,sha256=X9yFxMiIOCWQdxuqBGr8L7O3vRV2KElXdX1uHbFcZMk,421
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  msreport/export.py,sha256=wXQfaVd5UHlGKyKdrt2UWbhzNf-VyJy2Up5qfrPzO2M,20229
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  msreport/fasta.py,sha256=hPz4xlkjeTV-2YCrtWMsQQJSkJSmH1ZzNZBxHI89Nqk,1489
@@ -32,7 +32,7 @@ msreport/rinterface/__init__.py,sha256=Zs6STvbDqaVZVPRM6iU0kKjq0TWz_2p2ChvNAveRd
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  msreport/rinterface/limma.py,sha256=K5c3-5E_FawyTW02OOn7dIwWfpBgxDfiJPel8kAtwU0,8040
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  msreport/rinterface/rinstaller.py,sha256=AGs6NFMSwTLrzrIJz1E5BE5jFUz8eQBHlpM_MWVChzA,1370
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  msreport/rinterface/rscripts/limma.R,sha256=ElL7wyIUNxMjIiRJjPCKKK3bZh8H7YuSelk_WjHusqE,6128
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- msreport-0.0.33.dist-info/METADATA,sha256=wTPtgrlNorqX_805BaMqfib2HO-2Vjm42fllfvnXSWw,8833
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- msreport-0.0.33.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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- msreport-0.0.33.dist-info/licenses/LICENSE.txt,sha256=Pd-b5cKP4n2tFDpdx27qJSIq0d1ok0oEcGTlbtL6QMU,11560
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- msreport-0.0.33.dist-info/RECORD,,
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+ msreport-0.0.34.dist-info/METADATA,sha256=8Hbeu_6va72ccs7SbrhOT1FXzcYlYgVCBIIBDTWvngc,8833
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+ msreport-0.0.34.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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+ msreport-0.0.34.dist-info/licenses/LICENSE.txt,sha256=Pd-b5cKP4n2tFDpdx27qJSIq0d1ok0oEcGTlbtL6QMU,11560
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+ msreport-0.0.34.dist-info/RECORD,,