msasim 25.10.21__cp313-cp313-macosx_11_0_arm64.whl → 25.11.1__cp313-cp313-macosx_11_0_arm64.whl

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Files changed (8) hide show
  1. _Sailfish.cpython-313-darwin.so +0 -0
  2. msasim/sailfish.py +2 -4
  3. {msasim-25.10.21.dist-info → msasim-25.11.1.dist-info}/METADATA +1 -1
  4. msasim-25.11.1.dist-info/RECORD +10 -0
  5. msasim-25.10.21.dist-info/RECORD +0 -10
  6. {msasim-25.10.21.dist-info → msasim-25.11.1.dist-info}/WHEEL +0 -0
  7. {msasim-25.10.21.dist-info → msasim-25.11.1.dist-info}/licenses/LICENSE +0 -0
  8. {msasim-25.10.21.dist-info → msasim-25.11.1.dist-info}/top_level.txt +0 -0
_Sailfish.cpython-313-darwin.so CHANGED
Binary file
msasim/sailfish.py CHANGED
@@ -559,13 +559,11 @@ class Simulator:
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  msa = Msa(blocktree._get_Sailfish_blocks(),
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  self._simProtocol._get_root(),
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  self.get_sequences_to_save())
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+ self._simulator.set_aligned_sequence_map(msa._msa)
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  # sim.init_substitution_sim(mFac)
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  if self._simulation_type != SIMULATION_TYPE.NOSUBS:
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- with tempfile.TemporaryDirectory() as tmpdirname:
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- self._simulator.gen_substitutions_to_dir(msa.get_length(), tmpdirname)
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- msa._msa.set_substitutions_folder(tmpdirname)
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- msa._msa.write_msa_from_dir(str(output_file_path))
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+ self._simulator.gen_substitutions_to_file(msa.get_length(), str(output_file_path))
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{msasim-25.10.21.dist-info → msasim-25.11.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: msasim
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- Version: 25.10.21
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+ Version: 25.11.1
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  Summary: A fast MSA simulator
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  Home-page: https://github.com/elyawy/Sailfish-backend
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  Author: Elya Wygoda
msasim-25.11.1.dist-info/RECORD ADDED
@@ -0,0 +1,10 @@
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+ _Sailfish.cpython-313-darwin.so,sha256=Fx9o_KhVWbgV1Jb24aHLpYI12MgyHsBQWmXdJTPeUHU,1136224
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+ msasim-25.11.1.dist-info/RECORD,,
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+ msasim-25.11.1.dist-info/WHEEL,sha256=oqGJCpG61FZJmvyZ3C_0aCv-2mdfcY9e3fXvyUNmWfM,136
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+ msasim-25.11.1.dist-info/top_level.txt,sha256=NS1ILx5V94Yyh_M7yDrrqbBPu1TL_zJuxhsI90YEJVY,17
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+ msasim-25.11.1.dist-info/METADATA,sha256=KMYzMChA48UAAEtgaXo6FFRB6R997nmapGmn0c8QBbY,1667
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+ msasim-25.11.1.dist-info/licenses/LICENSE,sha256=p1Aa_mM2Nu6dG3XqMVU62Jhf04lNOwtXUrhhvhcDips,10312
7
+ msasim/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
8
+ msasim/sailfish.py,sha256=hNlCvoK4_MqEg128Ys2wBmzQ0AUBP_RRMJCCe8QINlU,26268
9
+ _Sailfish/__init__.pyi,sha256=DX4v5D6hPmsW7hvmL9lk2eK2LprIP_nEY88nzZTM3eI,15252
10
+ _Sailfish/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
msasim-25.10.21.dist-info/RECORD DELETED
@@ -1,10 +0,0 @@
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- _Sailfish.cpython-313-darwin.so,sha256=fYZnbicSEzrH-OpQEWPBurJisWKTf7S6SMiUHIhSqwQ,1163280
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- msasim-25.10.21.dist-info/RECORD,,
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- msasim-25.10.21.dist-info/WHEEL,sha256=oqGJCpG61FZJmvyZ3C_0aCv-2mdfcY9e3fXvyUNmWfM,136
4
- msasim-25.10.21.dist-info/top_level.txt,sha256=NS1ILx5V94Yyh_M7yDrrqbBPu1TL_zJuxhsI90YEJVY,17
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- msasim-25.10.21.dist-info/METADATA,sha256=OsWextwu9bCwmnMiDYIoqetKtuVEEbvZcXo7NpHZisg,1668
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- msasim-25.10.21.dist-info/licenses/LICENSE,sha256=p1Aa_mM2Nu6dG3XqMVU62Jhf04lNOwtXUrhhvhcDips,10312
7
- msasim/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
8
- msasim/sailfish.py,sha256=wdYEEIuXuuCQ64cGtk70z5GlvjyTfzRipX31YvvqCYU,26388
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- _Sailfish/__init__.pyi,sha256=DX4v5D6hPmsW7hvmL9lk2eK2LprIP_nEY88nzZTM3eI,15252
10
- _Sailfish/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0