msasim 24.9.0__cp38-cp38-macosx_10_9_x86_64.whl → 24.9.2__cp38-cp38-macosx_10_9_x86_64.whl

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Files changed (8) hide show
  1. _Sailfish.cpython-38-darwin.so +0 -0
  2. msasim/sailfish.py +4 -2
  3. {msasim-24.9.0.dist-info → msasim-24.9.2.dist-info}/METADATA +1 -1
  4. msasim-24.9.2.dist-info/RECORD +8 -0
  5. {msasim-24.9.0.dist-info → msasim-24.9.2.dist-info}/WHEEL +1 -1
  6. msasim-24.9.0.dist-info/RECORD +0 -8
  7. {msasim-24.9.0.dist-info → msasim-24.9.2.dist-info}/LICENSE +0 -0
  8. {msasim-24.9.0.dist-info → msasim-24.9.2.dist-info}/top_level.txt +0 -0
_Sailfish.cpython-38-darwin.so CHANGED
Binary file
msasim/sailfish.py CHANGED
@@ -467,7 +467,8 @@ class Simulator:
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  model: _Sailfish.modelCode,
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  model_parameters: List = None,
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  gamma_parameters_alpha : float = 1.0,
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- gamma_parameters_catergories: int = 1
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+ gamma_parameters_catergories: int = 1,
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+ invariant_sites_proportion: float = 0.0
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  ) -> None:
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  if not model:
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  raise ValueError(f"please provide a substitution model from the the following list: {_Sailfish.modelCode}")
@@ -490,8 +491,9 @@ class Simulator:
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  raise ValueError(f"please provide a model parameters")
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  else:
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  self._model_factory.set_model_parameters(model_parameters)
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-
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+
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  self._model_factory.set_gamma_parameters(gamma_parameters_alpha, gamma_parameters_catergories)
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+ self._model_factory.set_invariant_sites_proportion(invariant_sites_proportion)
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  self._simulator.init_substitution_sim(self._model_factory)
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  self._is_sub_model_init = True
{msasim-24.9.0.dist-info → msasim-24.9.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: msasim
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- Version: 24.9.0
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+ Version: 24.9.2
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  Summary: A fast MSA simulator
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  Home-page: https://github.com/elyawy/Sailfish-backend
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  Author: Elya Wygoda
msasim-24.9.2.dist-info/RECORD ADDED
@@ -0,0 +1,8 @@
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+ _Sailfish.cpython-38-darwin.so,sha256=M5cYAUgej7ksVz5Ijvd6RBZqOvsieyvoM_mc1PhFydw,1058168
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+ msasim-24.9.2.dist-info/RECORD,,
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+ msasim-24.9.2.dist-info/LICENSE,sha256=p1Aa_mM2Nu6dG3XqMVU62Jhf04lNOwtXUrhhvhcDips,10312
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+ msasim-24.9.2.dist-info/WHEEL,sha256=8y2QvCpcSKmOgs79baMSk0qx04BdDMPVSNe-YTQC1No,108
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+ msasim-24.9.2.dist-info/top_level.txt,sha256=NS1ILx5V94Yyh_M7yDrrqbBPu1TL_zJuxhsI90YEJVY,17
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+ msasim-24.9.2.dist-info/METADATA,sha256=4Te15UCkusaMnFSh-8fQylZ9nxGlHPhTWek0Fs0555c,1467
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+ msasim/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ msasim/sailfish.py,sha256=xcSh3Q4fo-PiQVjYQgqcqCV3sJ-u32jdMhsJJAL9vHY,24896
{msasim-24.9.0.dist-info → msasim-24.9.2.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (72.1.0)
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+ Generator: setuptools (73.0.1)
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  Root-Is-Purelib: false
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  Tag: cp38-cp38-macosx_10_9_x86_64
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msasim-24.9.0.dist-info/RECORD DELETED
@@ -1,8 +0,0 @@
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- _Sailfish.cpython-38-darwin.so,sha256=hEkw0ScG5Yh0-NysuVy_apxeiWHPZcqsj6YvK99xCDQ,1057344
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- msasim-24.9.0.dist-info/RECORD,,
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- msasim-24.9.0.dist-info/LICENSE,sha256=p1Aa_mM2Nu6dG3XqMVU62Jhf04lNOwtXUrhhvhcDips,10312
4
- msasim-24.9.0.dist-info/WHEEL,sha256=U9m1yHIec9SRKkhtMVkH6kuJxGYAaP4U0QlQfgSnI40,108
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- msasim-24.9.0.dist-info/top_level.txt,sha256=NS1ILx5V94Yyh_M7yDrrqbBPu1TL_zJuxhsI90YEJVY,17
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- msasim-24.9.0.dist-info/METADATA,sha256=vH617grqfCQK6pWipEPP8-HcsEyV7-siqhFIsJXaN4A,1467
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- msasim/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- msasim/sailfish.py,sha256=T8WrLsERNh4vQlqS3nM5dAo-MLdpVOVjNcOm49KKwaI,24764