mrzerocore 0.2.6__cp37-abi3-win32.whl → 0.2.8__cp37-abi3-win32.whl

MRzeroCore/phantom/brainweb/__init__.py

@@ -4,7 +4,6 @@ import gzip
 import requests
 import os
 import numpy as np
-from perlin_numpy import generate_perlin_noise_3d
 
 
 # Load the brainweb data file that contains info about tissues, subjects, ...
@@ -54,7 +53,13 @@ def gen_noise(range: float, res: np.ndarray) -> np.ndarray:
     else:
         freq = 20
         padded_res = (res + freq - 1) // freq * freq
-        noise = generate_perlin_noise_3d(padded_res, (freq, freq, freq))
+        try:
+            from perlin_numpy import generate_perlin_noise_3d
+            noise = generate_perlin_noise_3d(padded_res, (freq, freq, freq))
+        except:
+            print("perlin_numpy@git+https://github.com/pvigier/perlin-numpy")
+            print("is not installed, falling back to numpy.random.random()")
+            noise = np.random.random(padded_res)
         return 1 + range * noise[:res[0], :res[1], :res[2]]
 
 

MRzeroCore/phantom/sim_data.py

@@ -152,8 +152,7 @@ class SimData:
     def recover(self) -> Any:
         """Recover the data that was used to build this instance."""
         if self.recover_func is None:
-            print("No recover function was provided")
-            return None
+            raise Exception("No recover function was provided")
         else:
             return self.recover_func(self)
 

MRzeroCore/phantom/voxel_grid_phantom.py

@@ -145,8 +145,7 @@ class VoxelGridPhantom:
             voxel_pos,
             torch.tensor(shape, device=self.PD.device) / 2 / self.size,
             dephasing_func,
-            recover_func=lambda d: recover(
-                mask, self.base_fov, self.rel_fov, d)
+            recover_func=lambda data: recover(mask, data)
         )
 
     @classmethod

MRzeroCore/simulation/main_pass.py

@@ -38,6 +38,8 @@ def execute_graph(graph: Graph,
     min_latent_signal : float
         Minimum "latent_signal" metric of a state for it to be simulated.
         Should be <= than min_emitted_signal.
+    print_progress : bool
+        If true, the current repetition is printed while simulating.
 
     Returns
     -------

{MRzeroCore-0.2.6.dist-info → MRzeroCore-0.2.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: MRzeroCore
-Version: 0.2.6
+Version: 0.2.8
 Classifier: Programming Language :: Rust
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Programming Language :: Python :: Implementation :: PyPy
@@ -10,6 +10,8 @@ Requires-Dist: pypulseq
 Requires-Dist: matplotlib>=3.5
 Requires-Dist: scipy>=1.7
 Requires-Dist: requests>=2.20
+Requires-Dist: scikit-image
+Requires-Dist: torchkbnufft
 Requires-Dist: pydisseqt
 License-File: LICENSE
 Summary: Core functionality of MRzero
@@ -17,8 +19,8 @@ Author-email: Jonathan Endres <jonathan.endres@uk-erlangen.de>
 Requires-Python: >=3.9
 Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
 Project-URL: Documentation, https://mrzero-core.readthedocs.io/
-Project-URL: Repository, https://github.com/MRsources/MRzero-Core
 Project-URL: MRzero-Paper, https://arxiv.org/abs/2002.04265
+Project-URL: Repository, https://github.com/MRsources/MRzero-Core
 
 [![Documentation Status](https://readthedocs.org/projects/mrzero-core/badge/?version=latest)](https://mrzero-core.readthedocs.io/en/latest/?badge=latest)
 

{MRzeroCore-0.2.6.dist-info → MRzeroCore-0.2.8.dist-info}/RECORD

@@ -1,13 +1,13 @@
-MRzeroCore-0.2.6.dist-info/METADATA,sha256=RH2lFxHy7ShAeFj-3j5EYcQxafh_MQeYQMHWD0IVlu8,3737
-MRzeroCore-0.2.6.dist-info/WHEEL,sha256=gXYpX75r-fJLXR2RD6r-k3EXD66bMIXTAL43kNqJgxg,92
-MRzeroCore-0.2.6.dist-info/license_files/LICENSE,sha256=rd_IFJ484uAluv8CigP2CpXg4l2GJLLKENqB6-RXPp4,35112
+MRzeroCore-0.2.8.dist-info/METADATA,sha256=vmG2wLCGAbNTJ606C5os_6R-SGI7E3bE-XcIdFXHOiM,3793
+MRzeroCore-0.2.8.dist-info/WHEEL,sha256=gXYpX75r-fJLXR2RD6r-k3EXD66bMIXTAL43kNqJgxg,92
+MRzeroCore-0.2.8.dist-info/license_files/LICENSE,sha256=rd_IFJ484uAluv8CigP2CpXg4l2GJLLKENqB6-RXPp4,35112
 MRzeroCore/phantom/brainweb/brainweb_data.json,sha256=HETnXgLJndWbqeL4yfm8N-f9t0EwO-v6HzRA46f4VPU,1795
 MRzeroCore/phantom/brainweb/brainweb_data_sources.txt,sha256=Sh6NFLU1bhdaD0pp12D_Hc70cA_UC1s7KdHcuoGTKuA,1853
 MRzeroCore/phantom/brainweb/output/.gitkeep,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-MRzeroCore/phantom/brainweb/__init__.py,sha256=FFUf4-vksejFs0riau3onT-mnJVJ3OEnq0kxp90Hc04,6574
+MRzeroCore/phantom/brainweb/__init__.py,sha256=R48NlkMNpMgyKKwFm-5iUlhxBKctQ6dXx7yCmyVwm6E,6828
 MRzeroCore/phantom/custom_voxel_phantom.py,sha256=Pt5X1KjOgzNo6ebINyl4oT8drFTWp4NU3Mi3e5a0YVM,10413
-MRzeroCore/phantom/sim_data.py,sha256=sYN9kwn3KwpzXOJ2pe6iQPTR2exEqKYMBs5GrQzZi6A,7133
-MRzeroCore/phantom/voxel_grid_phantom.py,sha256=JftvRMP-qR1FYBId2GEkzGnPclX0Y4ExzKt1BnC2FD4,16654
+MRzeroCore/phantom/sim_data.py,sha256=rL0eRk_CuvzxIHrjcjHA2nexYEBieu70B2nS6VlhcxQ,7118
+MRzeroCore/phantom/voxel_grid_phantom.py,sha256=wAereuWTbJRBYVPRKT93tQlI-jDDOx1QDT2z5nrhFeY,16613
 MRzeroCore/pulseq/exporter.py,sha256=RlIHkXNVmQy-ywixIPeWeICnb9jq4_1_9O8HujBigLs,17226
 MRzeroCore/pulseq/exporter_v2.py,sha256=GVnhC6bmbxbYq4CFrBbL2nj98B_u3OVglOt50J19pkk,30554
 MRzeroCore/pulseq/helpers.py,sha256=ZEtctXy7qm6BLexcwNRDd8xPSBFNiy5dUeifOo5bYkw,8774
@@ -28,8 +28,8 @@ MRzeroCore/pulseq/pulseq_loader/__init__.py,sha256=6OLwC3k9LSjl8aRin9pV4-Rb-Q3YS
 MRzeroCore/reconstruction.py,sha256=NA_gT6kagFUNPx_JYUTgG17-9u76hwmoZhmI0HhUU0w,4244
 MRzeroCore/sequence.py,sha256=DRWdCwTZseDQjL8FGfy36I7inrX1Viuv1TRzInr50z8,27601
 MRzeroCore/simulation/isochromat_sim.py,sha256=tp1Jo0E3nKpOuN0weunlBzQQfqE0SF3MsmqqjbFa_vw,9186
-MRzeroCore/simulation/main_pass.py,sha256=c5-llCKrGIIEz6l-vcjA9jdbvHRCf53ye1zFeJliUw0,9298
+MRzeroCore/simulation/main_pass.py,sha256=el18lc4VhhyHtIwUIhYiSaF5daDnSvzbngYVCJ37rUI,9395
 MRzeroCore/simulation/pre_pass.py,sha256=5wmXKxgFeGwA7yrqTkOjcWoFuGuRYEPzedRGqkx2Evg,5117
 MRzeroCore/__init__.py,sha256=A0PQPakvuFhf5gYtioSTiBbqV3CZzBvbwW6anzeUH4M,830
-MRzeroCore/_prepass.pyd,sha256=95_3aGSWgHJxKLyX2XSNbLoBesYOyW4C0GDUhkIAdxw,355840
-MRzeroCore-0.2.6.dist-info/RECORD,,
+MRzeroCore/_prepass.pyd,sha256=XPymuUlXLMJkn3nA8oeOYwyyDTOzV0AONcI5b5me_ls,355840
+MRzeroCore-0.2.8.dist-info/RECORD,,