mrio-toolbox 1.1.2__py3-none-any.whl → 1.1.3__py3-none-any.whl
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- {mrio_toolbox-1.1.2.dist-info → mrio_toolbox-1.1.3.dist-info}/METADATA +1 -1
- mrio_toolbox-1.1.3.dist-info/RECORD +5 -0
- mrio_toolbox-1.1.3.dist-info/top_level.txt +1 -0
- __init__.py +0 -21
- _parts/_Axe.py +0 -539
- _parts/_Part.py +0 -1739
- _parts/__init__.py +0 -7
- _parts/part_operations.py +0 -57
- extractors/__init__.py +0 -20
- extractors/downloaders.py +0 -36
- extractors/emerging/__init__.py +0 -3
- extractors/emerging/emerging_extractor.py +0 -117
- extractors/eora/__init__.py +0 -3
- extractors/eora/eora_extractor.py +0 -132
- extractors/exiobase/__init__.py +0 -3
- extractors/exiobase/exiobase_extractor.py +0 -270
- extractors/extractors.py +0 -81
- extractors/figaro/__init__.py +0 -3
- extractors/figaro/figaro_downloader.py +0 -280
- extractors/figaro/figaro_extractor.py +0 -187
- extractors/gloria/__init__.py +0 -3
- extractors/gloria/gloria_extractor.py +0 -202
- extractors/gtap11/__init__.py +0 -7
- extractors/gtap11/extraction/__init__.py +0 -3
- extractors/gtap11/extraction/extractor.py +0 -129
- extractors/gtap11/extraction/harpy_files/__init__.py +0 -6
- extractors/gtap11/extraction/harpy_files/_header_sets.py +0 -279
- extractors/gtap11/extraction/harpy_files/har_file.py +0 -262
- extractors/gtap11/extraction/harpy_files/har_file_io.py +0 -974
- extractors/gtap11/extraction/harpy_files/header_array.py +0 -300
- extractors/gtap11/extraction/harpy_files/sl4.py +0 -229
- extractors/gtap11/gtap_mrio/__init__.py +0 -6
- extractors/gtap11/gtap_mrio/mrio_builder.py +0 -158
- extractors/icio/__init__.py +0 -3
- extractors/icio/icio_extractor.py +0 -121
- extractors/wiod/__init__.py +0 -3
- extractors/wiod/wiod_extractor.py +0 -143
- mrio.py +0 -899
- mrio_toolbox-1.1.2.dist-info/RECORD +0 -59
- mrio_toolbox-1.1.2.dist-info/top_level.txt +0 -6
- msm/__init__.py +0 -6
- msm/multi_scale_mapping.py +0 -863
- utils/__init__.py +0 -3
- utils/converters/__init__.py +0 -5
- utils/converters/pandas.py +0 -244
- utils/converters/xarray.py +0 -132
- utils/formatting/__init__.py +0 -0
- utils/formatting/formatter.py +0 -527
- utils/loaders/__init__.py +0 -7
- utils/loaders/_loader.py +0 -312
- utils/loaders/_loader_factory.py +0 -96
- utils/loaders/_nc_loader.py +0 -184
- utils/loaders/_np_loader.py +0 -112
- utils/loaders/_pandas_loader.py +0 -128
- utils/loaders/_parameter_loader.py +0 -386
- utils/savers/__init__.py +0 -11
- utils/savers/_path_checker.py +0 -37
- utils/savers/_to_folder.py +0 -165
- utils/savers/_to_nc.py +0 -60
- {mrio_toolbox-1.1.2.dist-info → mrio_toolbox-1.1.3.dist-info}/WHEEL +0 -0
- {mrio_toolbox-1.1.2.dist-info → mrio_toolbox-1.1.3.dist-info}/licenses/LICENSE +0 -0
mrio.py
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# -*- coding: utf-8 -*-
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"""
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This module provides the MRIO class.
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Created on Thu Mar 30 10:42:23 2023
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@author: beaufils
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"""
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import os
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import numpy as np
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import logging
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import xarray as xr
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import pandas as pd
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from mrio_toolbox._parts import Part
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from mrio_toolbox.utils import converters
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from mrio_toolbox.utils.loaders import make_loader
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from mrio_toolbox.utils.savers import save_mrio_to_folder,save_to_nc
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from mrio_toolbox.utils.formatting import formatter
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log = logging.getLogger(__name__)
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class MRIO:
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"""
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Representation of an MRIO table
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An MRIO table holds a collection of Parts, each representing a different aspect
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of the table (e.g., inter-industry matrix, final demand, satellite accounts, etc).
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The MRIO instance allows performing basic operations on the table, such as
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loading parts, setting groupings, filtering, aggregating, and saving data.
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Instance variables
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------------------
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metadata : dict
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Dictionary storing the metadata of the MRIO table.
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labels : dict
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Labels of the table parts, including:
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- List of countries
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- List of sectors
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groupings : dict
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Groupings of the MRIO table. Groupings are used to group labels into
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larger categories (e.g., countries into zones, sectors into aggregate
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sectors). These groupings are primarily used for visualization or
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aggregation purposes.
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c : int
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Number of countries in the table.
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s : int
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Number of sectors in the table.
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parts : dict of Part objects
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Dictionary containing the different parts of the MRIO table.
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Methods
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-------
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__init__(**kwargs):
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Initialize an MRIO instance from a file or explicit parameters.
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load_part(update_part=True, standalone=False, **kwargs):
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Load a Part object into the MRIO table.
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set_groupings(groupings=None):
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Set the groupings of the MRIO table.
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filter(threshold, fill_value=0):
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Filter the MRIO table by removing values below a specified threshold.
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add_part(part, name=None, update_part=True):
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Add a Part object to the MRIO table.
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new_part(data=None, name="part", dimensions=None, fill_value=0.0, **kwargs):
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Create a new Part object from data or dimensions.
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add_dimensions(dimensions):
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Add new dimensions to the MRIO table.
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add_labels(new_indices, dimension, fill_value=0.0):
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Add items to a label of the MRIO instance.
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replace_labels(name, new_labels):
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Replace labels for one or more dimensions in all MRIO parts.
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rename_dimensions(old_names, new_names):
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Rename the names of the dimensions in the MRIO table.
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aggregate(on="sectors"):
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Aggregate the MRIO table on a given dimension.
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has_neg(parts=None):
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Check whether some parts of the MRIO table have negative values.
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copy():
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Create a copy of the MRIO object.
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save(file, name=None, extension="npy", overwrite=False, **kwargs):
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Save the current MRIO instance to a file or folder.
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to_xarray():
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Convert the MRIO instance to an xarray Dataset.
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Notes
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-----
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This class provides a comprehensive interface for working with MRIO tables,
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including loading, modifying, and saving data, as well as performing
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operations like filtering and aggregation.
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"""
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def __init__(self,**kwargs):
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"""
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Initialize an MRIO instance.
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There are multiple ways to initialize an MRIO instance:
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- From a `.nc` file: Provide the "file" parameter with the path to the file.
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- From explicit parameters: Provide the data, labels, and metadata explicitly.
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- From a `.yaml` file: Provide the "file" parameter with the path to a `.yaml` file
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containing loading instructions.
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If no arguments are provided, an empty MRIO instance is created.
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Parameters
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----------
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file : str, optional
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Path to the file to load the MRIO table from. If a `.yaml` file is provided,
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it is interpreted as loading instructions.
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data : dict, xarray.DataArray, xarray.Dataset, or pandas.DataFrame, optional
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Data to initialize the MRIO instance. If provided, the instance is created
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from this data.
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kwargs : dict
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Additional parameters for initializing the MRIO instance.
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Raises
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------
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ValueError
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If the provided data type is not supported for initializing the MRIO instance.
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Notes
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-----
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The "data" parameter is reserved for setting an MRIO instance from a dictionary.
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It is intended for internal use only.
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"""
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if not kwargs:
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#Create an empty MRIO instance
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kwargs = {
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"data" : dict()
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}
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if "data" in kwargs:
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data = kwargs.pop("data")
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if isinstance(data,dict):
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log.info("Create MRIO from dict")
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self.parts,self.labels,self.metadata,self.groupings = dict(),dict(),dict(),dict()
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self.__dict__.update(data)
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for part in self.parts:
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self._update_labels(
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self.parts[part],
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update_part=False
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)
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self.metadata.update(kwargs)
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self.loader = make_loader()
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return
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if isinstance(data,(xr.DataArray,xr.Dataset)):
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if isinstance(data,xr.DataArray):
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data = data.to_dataset()
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mrio_data,to_load = converters.xarray.make_mrio(data,**kwargs)
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self.__init__(data=mrio_data)
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for part in to_load:
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self.add_part(data[part])
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return
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if isinstance(data,pd.DataFrame):
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self.__init__(data=kwargs)
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self.add_part(data)
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return
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raise ValueError(f"Cannot create an MRIO instance from type: {type(data)}")
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file = kwargs.pop("file",None)
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#Initialize the loader
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self.loader = make_loader(file=file,**kwargs)
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#Load basic MRIO data
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self.metadata = self.loader.metadata
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self.labels = self.loader.labels
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self.groupings = self.loader.groupings
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#Initialize the parts
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self.parts = dict()
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available_parts = self.loader.available_parts(
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extension = kwargs.get("extension",None)
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)
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to_load = {part:part for part in available_parts}
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if "part_settings" in self.loader.__dict__ and bool(self.loader.part_settings):
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to_load = dict()
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for part in self.loader.part_settings.keys():
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to_load[part] = self.loader.part_settings[part].get("file_name",part)
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for part in to_load.keys():
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if to_load[part] not in available_parts:
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log.warning(f"Part {part} not found in available parts")
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continue
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kwargs["name"] = part
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kwargs["file_name"] = to_load[part]
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self.load_part(**kwargs)
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if "countries" in self.labels:
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self.c = len(self.labels["countries"])
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if "sectors" in self.labels:
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self.s = len(self.labels["sectors"])
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def load_part(self,
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update_part = True,
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standalone=False,
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**kwargs):
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"""
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Load a Part object into the MRIO table
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By default, the Part is loaded using the current loader.
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Parameters
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----------
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update_part : bool, optional
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The groupings and labels of the Part are updated based on the MRIO attributes.
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standalone : bool, optional
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Whether to load the Part as a standalone object.
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The default is False.
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kwargs : dict
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Additional arguments to pass to the Part loader.
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"""
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name = kwargs.get("name","new_part")
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try:
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log.debug(f"Try loading part {name} from the current loader")
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part = self.loader.load_part(**kwargs)
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except FileNotFoundError:
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log.info(f"Part {name} not found with the current loader")
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log.debug(f"Try resetting the loader")
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loader = make_loader(**kwargs)
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part = loader.load_part()
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part = Part(**part)
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if standalone:
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return part
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log.info(f"Add part {part.name} to MRIO table")
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self.add_part(part,update_part=update_part)
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def _update_labels(self,part,update_part=True):
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"""
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Update the labels of the MRIO table with the labels of a Part object
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If all the labels of the Part are already in the MRIO labels,
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the method does nothing.
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This method is run after adding a new Part to the MRIO table.
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Parameters
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----------
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part : Part object
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Part object to use for the update.
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update_part : bool, optional
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If True and the Part labels are not properly set,
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tries to update the Part labels based on the MRIO labels.
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"""
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part_labels = part.get_labels()
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log.debug(f"Update labels of MRIO table with {part.name}")
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for labels in part_labels:
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for label in labels.keys():
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if isinstance(label,int):
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log.debug(f"Skip numerical label in {part.name}")
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if update_part:
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log.debug(f"Try to update labels of {part.name}")
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labels[label] = self._get_labels(
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len(labels[label])
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)
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continue #Skip unkwnown labels
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if label not in self.labels.keys():
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self.labels[label] = labels[label]
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log.info(f"Add label {label} to MRIO table")
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if update_part:
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part.set_labels(part_labels)
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def _get_labels(self,l):
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"""
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Find the labels fitting an axis with a given shape
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Available labels:
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- countries and sectors
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- countries
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- zones and sectors
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- zones
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- sectors
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If no fitting label is found, data are labelled numerically
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Parameters
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----------
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l : int
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Length of the data dimension.
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|
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281
|
-
Returns
|
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282
|
-
-------
|
|
283
|
-
dict of str:list of str
|
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284
|
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Labels of the axis.
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|
285
|
-
|
|
286
|
-
"""
|
|
287
|
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if l==1:
|
|
288
|
-
return (["all"])
|
|
289
|
-
log.debug("Try to infer label from axis of length "+str(l))
|
|
290
|
-
for label in self.labels:
|
|
291
|
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#Look whether a basic label fits the axis
|
|
292
|
-
if l == len(self.labels[label]):
|
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293
|
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log.debug(f"Label {label} fits axis of length {l}")
|
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294
|
-
return {label:self.labels[label]}
|
|
295
|
-
for grouping in self.groupings:
|
|
296
|
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#Look whether a grouped label fits the axis
|
|
297
|
-
if l == len(self.groupings[grouping]):
|
|
298
|
-
log.debug(f"Label {label} fits axis of length {l}")
|
|
299
|
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return {grouping:list(self.groupings[grouping]).keys()}
|
|
300
|
-
log.warning("No label found for axis of length "+str(l))
|
|
301
|
-
return {0:[i for i in range(l)]}
|
|
302
|
-
|
|
303
|
-
|
|
304
|
-
def set_groupings(self,groupings=None):
|
|
305
|
-
"""Set the groupings of the MRIO table
|
|
306
|
-
|
|
307
|
-
Groupings are used to group labels into larger categories
|
|
308
|
-
(e.g countries into zones, sectors in aggregate sectors).
|
|
309
|
-
Groupings have in principle no impact on the resolution of the table
|
|
310
|
-
but can be used for visualization or aggregation purposes.
|
|
311
|
-
|
|
312
|
-
Groupings should be disjoint, but this is not enforced.
|
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313
|
-
Nested groupings are not supported.
|
|
314
|
-
|
|
315
|
-
Unspecified groupings are set to the identity.
|
|
316
|
-
Calling the method without arguments resets the groupings to the identity.
|
|
317
|
-
|
|
318
|
-
Parameters
|
|
319
|
-
----------
|
|
320
|
-
groupings : dict of dict, optional
|
|
321
|
-
Groupings of the MRIO table.
|
|
322
|
-
The default is None.
|
|
323
|
-
If None, the groupings are set to the identity.
|
|
324
|
-
Groupings should be provided as a dict of dict::
|
|
325
|
-
|
|
326
|
-
{dimension : {group : [items]}}
|
|
327
|
-
|
|
328
|
-
where dimension is the name of the label to group,
|
|
329
|
-
group is the name of the group,
|
|
330
|
-
and items is a list of items to group.
|
|
331
|
-
"""
|
|
332
|
-
if groupings is None:
|
|
333
|
-
groupings = {label:dict() for label in self.labels.keys()}
|
|
334
|
-
self.set_groupings(groupings)
|
|
335
|
-
for key in groupings.keys():
|
|
336
|
-
labels = self.labels[key]
|
|
337
|
-
covered = []
|
|
338
|
-
for group in list(groupings[key]):
|
|
339
|
-
for item in list(groupings[key][group]):
|
|
340
|
-
if item not in labels:
|
|
341
|
-
log.warning(
|
|
342
|
-
f"Item {item} not found in {key} labels"
|
|
343
|
-
)
|
|
344
|
-
groupings[key][group].remove(item)
|
|
345
|
-
else:
|
|
346
|
-
covered.append(item)
|
|
347
|
-
if len(groupings[key][group]) == 0:
|
|
348
|
-
log.warning(f"Group {group} is empty")
|
|
349
|
-
groupings[key].pop(group)
|
|
350
|
-
for item in labels:
|
|
351
|
-
if item not in covered:
|
|
352
|
-
groupings[key][item] = [item]
|
|
353
|
-
self.groupings[key] = groupings[key]
|
|
354
|
-
self._update_groupings()
|
|
355
|
-
self.loader.set_groupings(self.groupings)
|
|
356
|
-
|
|
357
|
-
def _update_groupings(self):
|
|
358
|
-
"""
|
|
359
|
-
Update the groupings of all Parts of the MRIO instance
|
|
360
|
-
"""
|
|
361
|
-
for part in self.parts.keys():
|
|
362
|
-
self.parts[part].update_groupings(self.groupings)
|
|
363
|
-
self.groups = {
|
|
364
|
-
groups : list(self.groupings[groups].keys()) for groups in self.groupings
|
|
365
|
-
} #Save name of groups for each dimension
|
|
366
|
-
|
|
367
|
-
def filter(self,threshold,fill_value=0):
|
|
368
|
-
"""
|
|
369
|
-
Filter the MRIO table by removing values below a threshold
|
|
370
|
-
|
|
371
|
-
Parameters
|
|
372
|
-
----------
|
|
373
|
-
threshold : float
|
|
374
|
-
Value below which the values are set to 0.
|
|
375
|
-
fill_value : float, optional
|
|
376
|
-
Value to use to fill the table if only dimensions are given.
|
|
377
|
-
|
|
378
|
-
Returns
|
|
379
|
-
-------
|
|
380
|
-
None.
|
|
381
|
-
"""
|
|
382
|
-
for part in self.parts.keys():
|
|
383
|
-
self.parts[part] = self.parts[part].filter(threshold,fill_value)
|
|
384
|
-
|
|
385
|
-
def add_part(self,
|
|
386
|
-
part,
|
|
387
|
-
name=None,
|
|
388
|
-
update_part=True):
|
|
389
|
-
"""
|
|
390
|
-
Add a Part object to the MRIO table
|
|
391
|
-
|
|
392
|
-
Parameters
|
|
393
|
-
----------
|
|
394
|
-
part : Part object
|
|
395
|
-
Part object to add to the MRIO table.
|
|
396
|
-
update_part : bool, optional
|
|
397
|
-
Whether to update the labels of the Part object.
|
|
398
|
-
The default is True.
|
|
399
|
-
"""
|
|
400
|
-
if not isinstance(part,Part):
|
|
401
|
-
#Cast the data into a Part object
|
|
402
|
-
part=Part(part)
|
|
403
|
-
if name is None:
|
|
404
|
-
name = part.name
|
|
405
|
-
log.info(f"Add part {name} to MRIO table")
|
|
406
|
-
self._update_labels(part,update_part)
|
|
407
|
-
if update_part:
|
|
408
|
-
part.update_groupings(self.groupings)
|
|
409
|
-
for metadata in self.metadata:
|
|
410
|
-
if metadata not in part.metadata:
|
|
411
|
-
part.metadata[metadata] = self.metadata[metadata]
|
|
412
|
-
self.parts[name] = part
|
|
413
|
-
|
|
414
|
-
def new_part(self,
|
|
415
|
-
data=None,
|
|
416
|
-
name="part",
|
|
417
|
-
dimensions=None,
|
|
418
|
-
fill_value=0.0,
|
|
419
|
-
**kwargs):
|
|
420
|
-
"""Cast part data into the corresponding Part Object
|
|
421
|
-
|
|
422
|
-
Parameters
|
|
423
|
-
----------
|
|
424
|
-
data : np.ndarray, optional
|
|
425
|
-
Data to load in the Part. The default is None.
|
|
426
|
-
If None, the dimensions argument is used to create an empty Part.
|
|
427
|
-
name : str, optional
|
|
428
|
-
Name of the Part. The default is "part".
|
|
429
|
-
dimensions or labels : list of str, list of ints, str, list of dicts, optional
|
|
430
|
-
Labels of the Part.
|
|
431
|
-
Either of these formats are accepted:
|
|
432
|
-
|
|
433
|
-
- Dictionary of explicit labels for each axis
|
|
434
|
-
- List of explicit labels for each axis
|
|
435
|
-
- List of existing dimension names
|
|
436
|
-
|
|
437
|
-
If None, the labels are inferred from the data shape.
|
|
438
|
-
multiplier : str, optional
|
|
439
|
-
multiplier of the data. The default is None.
|
|
440
|
-
unit : float, optional
|
|
441
|
-
Unit of the data. The default is 1.
|
|
442
|
-
fill_value : float, optional
|
|
443
|
-
Value to use to fill the table if only dimensions are given.
|
|
444
|
-
|
|
445
|
-
Returns
|
|
446
|
-
-------
|
|
447
|
-
Part instance
|
|
448
|
-
"""
|
|
449
|
-
def unpack_dimensions(self,dimensions):
|
|
450
|
-
"""Unpack the dimensions argument"""
|
|
451
|
-
if isinstance(dimensions,dict):
|
|
452
|
-
return dimensions
|
|
453
|
-
if isinstance(dimensions,str):
|
|
454
|
-
#Try to get the dimensions from the current labels or groupings
|
|
455
|
-
if dimensions in self.labels.keys():
|
|
456
|
-
return {dimensions:self.labels[dimensions]}
|
|
457
|
-
if dimensions in self.groupings.keys():
|
|
458
|
-
return {dimensions:list(self.groupings[dimensions])}
|
|
459
|
-
log.warning(f"Dimension {dimensions} not found in labels or groupings\n"+\
|
|
460
|
-
" Available dimensions are "+str(self.labels.keys()))
|
|
461
|
-
raise ValueError(f"Invalid dimension {dimensions}")
|
|
462
|
-
if isinstance(dimensions,int):
|
|
463
|
-
#Try to infer the dimension from the length of the data
|
|
464
|
-
return self._get_labels(dimensions)
|
|
465
|
-
if isinstance(dimensions,(list,tuple)):
|
|
466
|
-
try:
|
|
467
|
-
#Try to unpack nested dimensions
|
|
468
|
-
output = dict()
|
|
469
|
-
for dim in dimensions:
|
|
470
|
-
output.update(unpack_dimensions(self,dim))
|
|
471
|
-
return output
|
|
472
|
-
except ValueError:
|
|
473
|
-
#Otherwise assume the labels were given as a list
|
|
474
|
-
return {0:dimensions}
|
|
475
|
-
raise TypeError(f"Invalid type for dimensions {type(dimensions)}")
|
|
476
|
-
|
|
477
|
-
dimensions = kwargs.get("dimensions",dimensions)
|
|
478
|
-
if dimensions is None:
|
|
479
|
-
dimensions = kwargs.get("labels",None)
|
|
480
|
-
if data is None:
|
|
481
|
-
#Create a Part from the dimensions only
|
|
482
|
-
if dimensions is None:
|
|
483
|
-
raise ValueError("No data nor dimensions provided")
|
|
484
|
-
|
|
485
|
-
if isinstance(dimensions,(int,str)):
|
|
486
|
-
#Ensure dimensions are iterable
|
|
487
|
-
dimensions = [dimensions]
|
|
488
|
-
labels = []
|
|
489
|
-
for dim in dimensions:
|
|
490
|
-
labels.append(unpack_dimensions(self,dim))
|
|
491
|
-
dims = len(labels)
|
|
492
|
-
shape = []
|
|
493
|
-
for dim in range(dims):
|
|
494
|
-
#Recursively compute the shape of the table
|
|
495
|
-
length = 1
|
|
496
|
-
for label in labels[dim]:
|
|
497
|
-
length *= len(labels[dim][label])
|
|
498
|
-
shape.append(length)
|
|
499
|
-
data = np.full(shape,fill_value=fill_value)
|
|
500
|
-
|
|
501
|
-
elif dimensions is None:
|
|
502
|
-
#Infer the dimensions from the data shape
|
|
503
|
-
labels = []
|
|
504
|
-
for dimension in range(data.ndim):
|
|
505
|
-
labels.append(
|
|
506
|
-
self._get_labels(data.shape[dimension])
|
|
507
|
-
)
|
|
508
|
-
|
|
509
|
-
else:
|
|
510
|
-
#Reformat the dimensions
|
|
511
|
-
labels = []
|
|
512
|
-
if isinstance(dimensions,(int,str)):
|
|
513
|
-
#Ensure dimensions are iterable
|
|
514
|
-
dimensions = [dimensions]
|
|
515
|
-
for dim in dimensions:
|
|
516
|
-
labels.append(unpack_dimensions(self,dim))
|
|
517
|
-
|
|
518
|
-
return Part(data=data,
|
|
519
|
-
name=name,
|
|
520
|
-
groupings = self.groupings,
|
|
521
|
-
labels = labels,
|
|
522
|
-
**kwargs)
|
|
523
|
-
|
|
524
|
-
def add_dimensions(self,dimensions):
|
|
525
|
-
"""
|
|
526
|
-
Add dimensions to the MRIO table
|
|
527
|
-
|
|
528
|
-
Parameters
|
|
529
|
-
----------
|
|
530
|
-
dimensions : dict
|
|
531
|
-
Description of the dimension to add.
|
|
532
|
-
"""
|
|
533
|
-
for dimension in dimensions.keys():
|
|
534
|
-
log.info("Add dimension "+dimension+" to MRIO table")
|
|
535
|
-
# check whether the dimension is already in the labels
|
|
536
|
-
if dimension in self.labels.keys():
|
|
537
|
-
log.info(f"Dimension {dimension} already exists in MRIO labels")
|
|
538
|
-
if dimensions[dimension] != self.labels[dimension]:
|
|
539
|
-
log.warning(f"There already exist different or differently ordered labels for dimension '{dimension}' in the MRIO labels. "+
|
|
540
|
-
"You are now overwriting them which leads to inconsistent labels in the parts of your MRIO table!")
|
|
541
|
-
|
|
542
|
-
if isinstance(dimensions[dimension],str):
|
|
543
|
-
#For single item dimensions, convert to list
|
|
544
|
-
dimensions[dimension] = [dimensions[dimension]]
|
|
545
|
-
self.labels[dimension] = dimensions[dimension]
|
|
546
|
-
|
|
547
|
-
def check_label_consistency(self):
|
|
548
|
-
"""
|
|
549
|
-
Check whether the labels of of all parts of the MRIO table are consistent.
|
|
550
|
-
"""
|
|
551
|
-
|
|
552
|
-
for part in self.parts.keys():
|
|
553
|
-
for key, labels in self.parts[part].labels.items():
|
|
554
|
-
if key in self.labels.keys():
|
|
555
|
-
if labels != self.labels[key]:
|
|
556
|
-
log.warning(f"Labels for dimension'{key}' in part '{part}' are inconsistent with MRIO labels")
|
|
557
|
-
return False
|
|
558
|
-
else:
|
|
559
|
-
log.warning(f"Label {key} not found in MRIO labels")
|
|
560
|
-
return False
|
|
561
|
-
return True
|
|
562
|
-
|
|
563
|
-
def add_labels(self,new_indices,dimension,
|
|
564
|
-
fill_value=0.0):
|
|
565
|
-
"""
|
|
566
|
-
Add items to a label of the MRIO instance
|
|
567
|
-
|
|
568
|
-
All Parts are updated automatically with the given fill_value
|
|
569
|
-
|
|
570
|
-
Parameters
|
|
571
|
-
----------
|
|
572
|
-
new_indices : list of str
|
|
573
|
-
items to add to the label
|
|
574
|
-
dimension : str
|
|
575
|
-
name of the labels to which the new indices should be added
|
|
576
|
-
fill_value : float, optional
|
|
577
|
-
Value to use to fill the newly created label fields in the tables.
|
|
578
|
-
"""
|
|
579
|
-
log.info(f"Add labels {str(new_indices)} to dimension "+dimension)
|
|
580
|
-
for part in self.parts.keys():
|
|
581
|
-
self.parts[part] = self.parts[part].add_labels(
|
|
582
|
-
new_indices,dimension=dimension,
|
|
583
|
-
fill_value=fill_value
|
|
584
|
-
)
|
|
585
|
-
self.labels[dimension] += new_indices
|
|
586
|
-
if dimension == "countries":
|
|
587
|
-
self.c = len(self.labels[dimension])
|
|
588
|
-
if dimension == "sectors":
|
|
589
|
-
self.s = len(self.labels[dimension])
|
|
590
|
-
if "x" in self.parts.keys():
|
|
591
|
-
x = self.x.data
|
|
592
|
-
x[x==0] = 1
|
|
593
|
-
self.loader.set_labels(self.labels)
|
|
594
|
-
|
|
595
|
-
def replace_labels(self,name,new_labels):
|
|
596
|
-
"""
|
|
597
|
-
Replace labels for one or more dimensions in all MRIO parts.
|
|
598
|
-
|
|
599
|
-
Parameters
|
|
600
|
-
----------
|
|
601
|
-
name : str or list of str
|
|
602
|
-
Name of the dimension for which the labels should be replaced
|
|
603
|
-
new_labels : list of str or dict of list of str
|
|
604
|
-
New labels for given dimension in the labels dictionary.
|
|
605
|
-
"""
|
|
606
|
-
log.info(f"Replace labels for {name}")
|
|
607
|
-
if isinstance(name,str):
|
|
608
|
-
self._replace_individual_labels(name = name, new_labels = new_labels)
|
|
609
|
-
elif isinstance(name,list):
|
|
610
|
-
for dimension in name:
|
|
611
|
-
if isinstance(new_labels,list):
|
|
612
|
-
raise ValueError("You provided multiple dimensions but only one set of new labels.")
|
|
613
|
-
elif isinstance(new_labels,dict):
|
|
614
|
-
new_labels = new_labels[dimension]
|
|
615
|
-
else:
|
|
616
|
-
raise TypeError(f"Invalid type for new labels: {type(new_labels)}")
|
|
617
|
-
self._replace_individual_labels(dimension,new_labels)
|
|
618
|
-
|
|
619
|
-
def _replace_individual_labels(self,name, new_labels): # check for usages and update them
|
|
620
|
-
"""
|
|
621
|
-
Replace labels for one dimension in all MRIO parts.
|
|
622
|
-
|
|
623
|
-
Parameters
|
|
624
|
-
----------
|
|
625
|
-
name : str
|
|
626
|
-
Name of the labels to replace. Usually this is 'countries', 'sectors', 'va_labs' or 'y_labs'
|
|
627
|
-
new_labels : list of str
|
|
628
|
-
New labels for given name in the label dictionary.
|
|
629
|
-
"""
|
|
630
|
-
log.info(f"Replace labels for {name}")
|
|
631
|
-
if name not in self.labels.keys():
|
|
632
|
-
log.warning(f"Label {name} is not in MRIO labels and cannot be replaced.")
|
|
633
|
-
return
|
|
634
|
-
for part in self.parts.keys():
|
|
635
|
-
self.parts[part].replace_labels(name, new_labels)
|
|
636
|
-
self.loader.set_labels(self.labels)
|
|
637
|
-
self.labels[name] = new_labels
|
|
638
|
-
|
|
639
|
-
if name in self.groupings.keys():
|
|
640
|
-
log.warning("Groupings for all dimensions are reset to identity, because the labels have changed.\n \
|
|
641
|
-
Please update the groupings manually if needed.")
|
|
642
|
-
self.set_groupings(groupings=None)
|
|
643
|
-
|
|
644
|
-
def rename_dimensions(self,old_names,new_names):
|
|
645
|
-
"""
|
|
646
|
-
Rename the names of the dimensions.
|
|
647
|
-
|
|
648
|
-
The keys of the label dicts for the MRIO instance are renamed.
|
|
649
|
-
The content of the labels and the groupings is conserved.
|
|
650
|
-
|
|
651
|
-
Parameters
|
|
652
|
-
----------
|
|
653
|
-
old_names : str or list of str
|
|
654
|
-
Labels to rename.
|
|
655
|
-
new_names : str or list of str
|
|
656
|
-
New names for the labels.
|
|
657
|
-
"""
|
|
658
|
-
if isinstance(old_names,str):
|
|
659
|
-
old_names = [old_names]
|
|
660
|
-
if isinstance(new_names,str):
|
|
661
|
-
new_names = [new_names]
|
|
662
|
-
for old,new in zip(old_names,new_names):
|
|
663
|
-
log.info(f"Rename label {old} to {new}")
|
|
664
|
-
|
|
665
|
-
if old in self.labels.keys():
|
|
666
|
-
self.labels = {new if key == old else key : value for key, value in self.labels.items()}
|
|
667
|
-
else:
|
|
668
|
-
log.warning(f"Label {old} is not in MRIO labels and cannot be renamed.")
|
|
669
|
-
continue
|
|
670
|
-
if old in self.groupings.keys():
|
|
671
|
-
self.groupings = {new if key == old else key : value for key, value in self.groupings.items()}
|
|
672
|
-
for part in self.parts.keys():
|
|
673
|
-
self.parts[part].rename_labels(old,new)
|
|
674
|
-
|
|
675
|
-
def reorder_data(self, new_labels):
|
|
676
|
-
"""
|
|
677
|
-
Reorder the data of the MRIO instance based on new labels.
|
|
678
|
-
|
|
679
|
-
This method is used to reorder the data of the MRIO instance based on the new labels.
|
|
680
|
-
The new labels should be a dictionary with the same keys and items as the old mrio labels
|
|
681
|
-
but the keys and items can be in a different order. The data of the part is then reordered
|
|
682
|
-
to fit the new labels.
|
|
683
|
-
|
|
684
|
-
Parameters
|
|
685
|
-
----------
|
|
686
|
-
new_labels : dict
|
|
687
|
-
New labels to use for reordering.
|
|
688
|
-
"""
|
|
689
|
-
log.info("Reorder MRIO data with new labels")
|
|
690
|
-
old_labels = self.labels
|
|
691
|
-
if not isinstance(new_labels,dict):
|
|
692
|
-
raise TypeError(f"Invalid type for new labels: {type(new_labels)}. Expected a dict.")
|
|
693
|
-
if not set(new_labels.keys()).issubset(set(old_labels.keys())):
|
|
694
|
-
raise ValueError("You are trying to reorder data for dimensions that are not present in your MRIO instance")
|
|
695
|
-
|
|
696
|
-
for part in self.parts.keys():
|
|
697
|
-
new_part_labels = {}
|
|
698
|
-
for key, labels in new_labels.items():
|
|
699
|
-
if key in self.parts[part].labels.keys():
|
|
700
|
-
new_part_labels[key] = labels
|
|
701
|
-
self.parts[part].reorder_data(new_part_labels)
|
|
702
|
-
|
|
703
|
-
for key in new_labels.keys():
|
|
704
|
-
self.replace_labels(key, new_labels[key])
|
|
705
|
-
|
|
706
|
-
|
|
707
|
-
|
|
708
|
-
def aggregate(self,on="sectors"):
|
|
709
|
-
"""Aggregate the MRIO table on a given dimension
|
|
710
|
-
|
|
711
|
-
The aggregation is performed by summing the values of the table
|
|
712
|
-
for the items that are grouped together.
|
|
713
|
-
|
|
714
|
-
Parameters
|
|
715
|
-
----------
|
|
716
|
-
on : str, optional
|
|
717
|
-
Name of the dimension to aggregate on.
|
|
718
|
-
The default is "sectors".
|
|
719
|
-
|
|
720
|
-
Returns
|
|
721
|
-
-------
|
|
722
|
-
None.
|
|
723
|
-
|
|
724
|
-
"""
|
|
725
|
-
if on == "all":
|
|
726
|
-
on = list(self.groupings.keys())
|
|
727
|
-
if isinstance(on,list):
|
|
728
|
-
for item in on:
|
|
729
|
-
self.aggregate(item)
|
|
730
|
-
return
|
|
731
|
-
log.info(f"Aggregate MRIO on {on}")
|
|
732
|
-
if on not in self.labels.keys():
|
|
733
|
-
raise ValueError(f"Invalid dimension {on}")
|
|
734
|
-
if on not in self.groupings.keys():
|
|
735
|
-
raise ValueError(f"No groupings defined for dimensions {on}")
|
|
736
|
-
|
|
737
|
-
new_groupings = {
|
|
738
|
-
item : [item] for item in self.groupings[on]
|
|
739
|
-
}
|
|
740
|
-
new_labels = [item for item in self.groupings[on]]
|
|
741
|
-
|
|
742
|
-
for part in self.parts.keys():
|
|
743
|
-
self.parts[part] = self.parts[part].aggregate(on)
|
|
744
|
-
|
|
745
|
-
self.groupings[on] = new_groupings
|
|
746
|
-
self.labels[on] = new_labels
|
|
747
|
-
|
|
748
|
-
if on == "countries":
|
|
749
|
-
self.c = len(self.labels[on])
|
|
750
|
-
if on == "sectors":
|
|
751
|
-
self.s = len(self.labels[on])
|
|
752
|
-
|
|
753
|
-
self.loader.set_groupings(self.groupings)
|
|
754
|
-
self.loader.set_labels(self.labels)
|
|
755
|
-
|
|
756
|
-
def __getattr__(self,name):
|
|
757
|
-
selset = [
|
|
758
|
-
self.parts,
|
|
759
|
-
self.labels,
|
|
760
|
-
self.metadata
|
|
761
|
-
]
|
|
762
|
-
for sel in selset:
|
|
763
|
-
try:
|
|
764
|
-
return sel[name]
|
|
765
|
-
except:
|
|
766
|
-
pass
|
|
767
|
-
raise AttributeError(f"Attribute {name} not found")
|
|
768
|
-
|
|
769
|
-
def __setattr__(self,name,value):
|
|
770
|
-
if isinstance(value,Part):
|
|
771
|
-
self.add_part(value,name=name)
|
|
772
|
-
elif isinstance(value,np.ndarray):
|
|
773
|
-
self.add_part(self.new_part(value,name))
|
|
774
|
-
else:
|
|
775
|
-
super().__setattr__(name,value)
|
|
776
|
-
|
|
777
|
-
def __str__(self):
|
|
778
|
-
s = ["MRIO object: "+ ' '.join(self.metadata.values())]
|
|
779
|
-
s.append("")
|
|
780
|
-
s.append("Parts currently loaded:")
|
|
781
|
-
s.append(" " + ", ".join(self.parts.keys()))
|
|
782
|
-
return "\n".join(s)
|
|
783
|
-
|
|
784
|
-
def has_neg(self,parts=None):
|
|
785
|
-
"""Check whether some Parts have negative values
|
|
786
|
-
|
|
787
|
-
Parameters
|
|
788
|
-
----------
|
|
789
|
-
parts : str, list of str or None, optional
|
|
790
|
-
List of parts to inspect.
|
|
791
|
-
If left empty, all parts are inspected.
|
|
792
|
-
|
|
793
|
-
Returns
|
|
794
|
-
-------
|
|
795
|
-
bool
|
|
796
|
-
"""
|
|
797
|
-
if isinstance(parts,str):
|
|
798
|
-
parts = [parts]
|
|
799
|
-
elif parts is None:
|
|
800
|
-
parts = self.parts.keys()
|
|
801
|
-
for part in parts:
|
|
802
|
-
if self.parts[part].hasneg():
|
|
803
|
-
return True
|
|
804
|
-
return False
|
|
805
|
-
|
|
806
|
-
def copy(self):
|
|
807
|
-
"""Create a copy of the MRIO object"""
|
|
808
|
-
return MRIO(data=self.__dict__)
|
|
809
|
-
|
|
810
|
-
def save(self,
|
|
811
|
-
file=None,
|
|
812
|
-
name=None,
|
|
813
|
-
extension = ".nc",
|
|
814
|
-
overwrite=False,
|
|
815
|
-
**kwargs):
|
|
816
|
-
"""
|
|
817
|
-
Save the current MRIO instance
|
|
818
|
-
|
|
819
|
-
If the path points to a folder, the MRIO parts can be saved as:
|
|
820
|
-
- .npy
|
|
821
|
-
- .csv
|
|
822
|
-
- .txt
|
|
823
|
-
- .xlsx
|
|
824
|
-
|
|
825
|
-
Labels are saved as .txt files and metadata as a .yaml file.
|
|
826
|
-
|
|
827
|
-
Otherwise the MRIO instance is saved as a .nc file.
|
|
828
|
-
|
|
829
|
-
Parameters
|
|
830
|
-
----------
|
|
831
|
-
file : str
|
|
832
|
-
Full path to the file or folder to save the MRIO instance into.
|
|
833
|
-
If a file is provided, the extension is used to determine the format.
|
|
834
|
-
extension : str, optional
|
|
835
|
-
Extension of the file to save the MRIO instance into.
|
|
836
|
-
This is only used if the file is a folder.
|
|
837
|
-
overwrite : bool, optional
|
|
838
|
-
Whether to overwrite the existing file. The default is False.
|
|
839
|
-
If False, the version name is iterated until a non-existing
|
|
840
|
-
file name is found.
|
|
841
|
-
kwargs : dict
|
|
842
|
-
Additional arguments to pass to the saver.
|
|
843
|
-
"""
|
|
844
|
-
if file is None:
|
|
845
|
-
if file is None:
|
|
846
|
-
name = self.metadata.get("name","mrio")
|
|
847
|
-
file = name
|
|
848
|
-
file_extension = os.path.splitext(file)[1]
|
|
849
|
-
if file_extension == "" and extension == ".nc":
|
|
850
|
-
file = os.path.join(file+".nc")
|
|
851
|
-
file_extension = ".nc"
|
|
852
|
-
if file_extension == "":
|
|
853
|
-
#If the file is a folder, save in folder
|
|
854
|
-
save_mrio_to_folder(
|
|
855
|
-
self,
|
|
856
|
-
file,
|
|
857
|
-
name=name,
|
|
858
|
-
extension=extension,
|
|
859
|
-
overwrite=overwrite,
|
|
860
|
-
**kwargs
|
|
861
|
-
)
|
|
862
|
-
elif file_extension == ".nc":
|
|
863
|
-
#If the file is a .nc, save the tables
|
|
864
|
-
save_to_nc(self,file,overwrite,**kwargs)
|
|
865
|
-
else:
|
|
866
|
-
raise NotImplementedError(f"Cannot save MRIO in {file_extension} format")
|
|
867
|
-
|
|
868
|
-
def to_xarray(self):
|
|
869
|
-
"""
|
|
870
|
-
Convert the MRIO instance to an xarray Dataset
|
|
871
|
-
"""
|
|
872
|
-
return converters.xarray.to_DataSet(self)
|
|
873
|
-
|
|
874
|
-
def reallocate_negatives(self,**kwargs):
|
|
875
|
-
formatter.reallocate_negatives(self,**kwargs)
|
|
876
|
-
|
|
877
|
-
def adjust_intermediates(self,**kwargs):
|
|
878
|
-
formatter.adjust_intermediates(self,**kwargs)
|
|
879
|
-
|
|
880
|
-
def fill_empty_rows(self,**kwargs):
|
|
881
|
-
formatter.fill_empty_rows(self,**kwargs)
|
|
882
|
-
|
|
883
|
-
def balance_va(self,**kwargs):
|
|
884
|
-
formatter.balance_va(self,**kwargs)
|
|
885
|
-
|
|
886
|
-
def compute_technical_coefficients(self,**kwargs):
|
|
887
|
-
formatter.compute_technical_coefficients(self,**kwargs)
|
|
888
|
-
|
|
889
|
-
def compute_leontief(self,**kwargs):
|
|
890
|
-
formatter.compute_leontief(self,**kwargs)
|
|
891
|
-
|
|
892
|
-
def preprocess(self,**kwargs):
|
|
893
|
-
formatter.preprocess(self,**kwargs)
|
|
894
|
-
|
|
895
|
-
def rename_part(self,old_name,new_name):
|
|
896
|
-
formatter.rename_part(self,old_name,new_name)
|
|
897
|
-
|
|
898
|
-
def rename_parts(self,renaming_dict):
|
|
899
|
-
formatter.rename_parts(self,renaming_dict)
|