mrd-python 2.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mrd/__init__.py +96 -0
- mrd/_binary.py +1339 -0
- mrd/_dtypes.py +89 -0
- mrd/_ndjson.py +1194 -0
- mrd/binary.py +680 -0
- mrd/ndjson.py +2716 -0
- mrd/protocols.py +180 -0
- mrd/tools/export_png_images.py +39 -0
- mrd/tools/minimal_example.py +27 -0
- mrd/tools/phantom.py +161 -0
- mrd/tools/simulation.py +173 -0
- mrd/tools/stream_recon.py +184 -0
- mrd/tools/transform.py +37 -0
- mrd/types.py +1840 -0
- mrd/yardl_types.py +303 -0
- mrd_python-2.0.0.dist-info/METADATA +19 -0
- mrd_python-2.0.0.dist-info/RECORD +19 -0
- mrd_python-2.0.0.dist-info/WHEEL +5 -0
- mrd_python-2.0.0.dist-info/top_level.txt +1 -0
mrd/types.py
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# This file was generated by the "yardl" tool. DO NOT EDIT.
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# pyright: reportUnusedImport=false
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# pyright: reportUnknownArgumentType=false
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# pyright: reportUnknownMemberType=false
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# pyright: reportUnknownVariableType=false
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import datetime
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import enum
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import types
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import typing
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import numpy as np
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import numpy.typing as npt
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from . import yardl_types as yardl
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from . import _dtypes
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Y = typing.TypeVar("Y")
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Y_NP = typing.TypeVar("Y_NP", bound=np.generic)
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T = typing.TypeVar("T")
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T_NP = typing.TypeVar("T_NP", bound=np.generic)
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class AcquisitionFlags(enum.IntFlag):
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FIRST_IN_ENCODE_STEP_1 = 1
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LAST_IN_ENCODE_STEP_1 = 2
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FIRST_IN_ENCODE_STEP_2 = 4
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LAST_IN_ENCODE_STEP_2 = 8
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FIRST_IN_AVERAGE = 16
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LAST_IN_AVERAGE = 32
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FIRST_IN_SLICE = 64
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LAST_IN_SLICE = 128
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FIRST_IN_CONTRAST = 256
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LAST_IN_CONTRAST = 512
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FIRST_IN_PHASE = 1024
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LAST_IN_PHASE = 2048
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FIRST_IN_REPETITION = 4096
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LAST_IN_REPETITION = 8192
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FIRST_IN_SET = 16384
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LAST_IN_SET = 32768
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FIRST_IN_SEGMENT = 65536
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LAST_IN_SEGMENT = 131072
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IS_NOISE_MEASUREMENT = 262144
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IS_PARALLEL_CALIBRATION = 524288
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IS_PARALLEL_CALIBRATION_AND_IMAGING = 1048576
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IS_REVERSE = 2097152
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IS_NAVIGATION_DATA = 4194304
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IS_PHASECORR_DATA = 8388608
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LAST_IN_MEASUREMENT = 16777216
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IS_HPFEEDBACK_DATA = 33554432
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IS_DUMMYSCAN_DATA = 67108864
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IS_RTFEEDBACK_DATA = 134217728
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IS_SURFACECOILCORRECTIONSCAN_DATA = 268435456
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IS_PHASE_STABILIZATION_REFERENCE = 536870912
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IS_PHASE_STABILIZATION = 1073741824
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def __eq__(self, other: object) -> bool:
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return isinstance(other, AcquisitionFlags) and self.value == other.value
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def __hash__(self) -> int:
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return hash(self.value)
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__str__ = enum.Flag.__str__ # type: ignore
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class EncodingCounters:
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kspace_encode_step_1: typing.Optional[yardl.UInt32]
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"""Phase encoding line"""
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kspace_encode_step_2: typing.Optional[yardl.UInt32]
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"""Partition encoding"""
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average: typing.Optional[yardl.UInt32]
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"""Signal average"""
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slice: typing.Optional[yardl.UInt32]
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"""Slice number (multi-slice 2D)"""
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contrast: typing.Optional[yardl.UInt32]
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"""Echo number in multi-echo"""
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phase: typing.Optional[yardl.UInt32]
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"""Cardiac phase"""
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repetition: typing.Optional[yardl.UInt32]
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"""Counter in repeated/dynamic acquisitions"""
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set: typing.Optional[yardl.UInt32]
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"""Sets of different preparation, e.g. flow encoding, diffusion weighting"""
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segment: typing.Optional[yardl.UInt32]
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"""Counter for segmented acquisitions"""
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user: list[yardl.UInt32]
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"""User-defined counters"""
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def __init__(self, *,
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kspace_encode_step_1: typing.Optional[yardl.UInt32] = None,
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kspace_encode_step_2: typing.Optional[yardl.UInt32] = None,
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average: typing.Optional[yardl.UInt32] = None,
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slice: typing.Optional[yardl.UInt32] = None,
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contrast: typing.Optional[yardl.UInt32] = None,
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phase: typing.Optional[yardl.UInt32] = None,
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repetition: typing.Optional[yardl.UInt32] = None,
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set: typing.Optional[yardl.UInt32] = None,
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segment: typing.Optional[yardl.UInt32] = None,
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user: typing.Optional[list[yardl.UInt32]] = None,
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):
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self.kspace_encode_step_1 = kspace_encode_step_1
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self.kspace_encode_step_2 = kspace_encode_step_2
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self.average = average
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self.slice = slice
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self.contrast = contrast
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self.phase = phase
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self.repetition = repetition
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self.set = set
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self.segment = segment
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self.user = user if user is not None else []
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def __eq__(self, other: object) -> bool:
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return (
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isinstance(other, EncodingCounters)
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and self.kspace_encode_step_1 == other.kspace_encode_step_1
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and self.kspace_encode_step_2 == other.kspace_encode_step_2
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and self.average == other.average
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and self.slice == other.slice
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and self.contrast == other.contrast
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and self.phase == other.phase
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and self.repetition == other.repetition
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and self.set == other.set
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and self.segment == other.segment
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and self.user == other.user
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)
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def __str__(self) -> str:
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return f"EncodingCounters(kspaceEncodeStep1={self.kspace_encode_step_1}, kspaceEncodeStep2={self.kspace_encode_step_2}, average={self.average}, slice={self.slice}, contrast={self.contrast}, phase={self.phase}, repetition={self.repetition}, set={self.set}, segment={self.segment}, user={self.user})"
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def __repr__(self) -> str:
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return f"EncodingCounters(kspaceEncodeStep1={repr(self.kspace_encode_step_1)}, kspaceEncodeStep2={repr(self.kspace_encode_step_2)}, average={repr(self.average)}, slice={repr(self.slice)}, contrast={repr(self.contrast)}, phase={repr(self.phase)}, repetition={repr(self.repetition)}, set={repr(self.set)}, segment={repr(self.segment)}, user={repr(self.user)})"
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AcquisitionData = npt.NDArray[np.complex64]
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TrajectoryData = npt.NDArray[np.float32]
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class Acquisition:
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flags: AcquisitionFlags
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"""A bit mask of common attributes applicable to individual acquisition"""
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idx: EncodingCounters
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"""Encoding loop counters"""
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measurement_uid: yardl.UInt32
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"""Unique ID corresponding to the readout"""
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scan_counter: typing.Optional[yardl.UInt32]
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"""Zero-indexed incrementing counter for readouts"""
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acquisition_time_stamp: typing.Optional[yardl.UInt32]
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"""Clock time stamp (e.g. milliseconds since midnight)"""
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physiology_time_stamp: list[yardl.UInt32]
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"""Time stamps relative to physiological triggering"""
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channel_order: list[yardl.UInt32]
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"""Channel numbers"""
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discard_pre: typing.Optional[yardl.UInt32]
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"""Number of readout samples to be discarded at the beginning
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(e.g. if the ADC is active during gradient events)
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"""
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discard_post: typing.Optional[yardl.UInt32]
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"""Number of readout samples to be discarded at the end
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(e.g. if the ADC is active during gradient events)
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"""
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center_sample: typing.Optional[yardl.UInt32]
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"""Index of the readout sample corresponing to k-space center (zero indexed)"""
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encoding_space_ref: typing.Optional[yardl.UInt32]
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"""Indexed reference to the encoding spaces enumerated in the MRD Header"""
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sample_time_us: typing.Optional[yardl.Float32]
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"""Readout bandwidth, as time between samples in microseconds"""
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position: npt.NDArray[np.float32]
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"""Center of the excited volume, in LPS coordinates relative to isocenter in millimeters"""
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read_dir: npt.NDArray[np.float32]
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"""Directional cosine of readout/frequency encoding"""
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phase_dir: npt.NDArray[np.float32]
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"""Directional cosine of phase encoding (2D)"""
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slice_dir: npt.NDArray[np.float32]
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"""Directional cosine of slice normal, i.e. cross-product of read_dir and phase_dir"""
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patient_table_position: npt.NDArray[np.float32]
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"""Offset position of the patient table, in LPS coordinates"""
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user_int: list[yardl.Int32]
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"""User-defined integer parameters"""
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user_float: list[yardl.Float32]
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"""User-defined float parameters"""
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data: AcquisitionData
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"""Raw k-space samples array"""
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trajectory: TrajectoryData
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"""Trajectory array"""
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def __init__(self, *,
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flags: AcquisitionFlags = AcquisitionFlags(0),
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idx: typing.Optional[EncodingCounters] = None,
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measurement_uid: yardl.UInt32 = 0,
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scan_counter: typing.Optional[yardl.UInt32] = None,
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acquisition_time_stamp: typing.Optional[yardl.UInt32] = None,
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physiology_time_stamp: typing.Optional[list[yardl.UInt32]] = None,
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channel_order: typing.Optional[list[yardl.UInt32]] = None,
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discard_pre: typing.Optional[yardl.UInt32] = None,
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discard_post: typing.Optional[yardl.UInt32] = None,
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center_sample: typing.Optional[yardl.UInt32] = None,
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encoding_space_ref: typing.Optional[yardl.UInt32] = None,
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sample_time_us: typing.Optional[yardl.Float32] = None,
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position: typing.Optional[npt.NDArray[np.float32]] = None,
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read_dir: typing.Optional[npt.NDArray[np.float32]] = None,
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phase_dir: typing.Optional[npt.NDArray[np.float32]] = None,
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slice_dir: typing.Optional[npt.NDArray[np.float32]] = None,
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patient_table_position: typing.Optional[npt.NDArray[np.float32]] = None,
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user_int: typing.Optional[list[yardl.Int32]] = None,
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user_float: typing.Optional[list[yardl.Float32]] = None,
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data: typing.Optional[AcquisitionData] = None,
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trajectory: typing.Optional[TrajectoryData] = None,
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):
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self.flags = flags
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self.idx = idx if idx is not None else EncodingCounters()
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self.measurement_uid = measurement_uid
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self.scan_counter = scan_counter
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self.acquisition_time_stamp = acquisition_time_stamp
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self.physiology_time_stamp = physiology_time_stamp if physiology_time_stamp is not None else []
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self.channel_order = channel_order if channel_order is not None else []
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self.discard_pre = discard_pre
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self.discard_post = discard_post
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self.center_sample = center_sample
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self.encoding_space_ref = encoding_space_ref
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self.sample_time_us = sample_time_us
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self.position = position if position is not None else np.zeros((3,), dtype=np.dtype(np.float32))
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self.read_dir = read_dir if read_dir is not None else np.zeros((3,), dtype=np.dtype(np.float32))
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self.phase_dir = phase_dir if phase_dir is not None else np.zeros((3,), dtype=np.dtype(np.float32))
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self.slice_dir = slice_dir if slice_dir is not None else np.zeros((3,), dtype=np.dtype(np.float32))
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self.patient_table_position = patient_table_position if patient_table_position is not None else np.zeros((3,), dtype=np.dtype(np.float32))
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self.user_int = user_int if user_int is not None else []
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self.user_float = user_float if user_float is not None else []
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self.data = data if data is not None else np.zeros((0, 0), dtype=np.dtype(np.complex64))
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self.trajectory = trajectory if trajectory is not None else np.zeros((0, 0), dtype=np.dtype(np.float32))
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def coils(self) -> yardl.Size:
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return self.data.shape[0]
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def samples(self) -> yardl.Size:
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return self.data.shape[1]
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def active_channels(self) -> yardl.Size:
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return len(self.channel_order)
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def trajectory_dimensions(self) -> yardl.Size:
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return self.trajectory.shape[0]
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def trajectory_samples(self) -> yardl.Size:
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return self.trajectory.shape[1]
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def __eq__(self, other: object) -> bool:
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return (
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isinstance(other, Acquisition)
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and self.flags == other.flags
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and self.idx == other.idx
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and self.measurement_uid == other.measurement_uid
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and self.scan_counter == other.scan_counter
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and self.acquisition_time_stamp == other.acquisition_time_stamp
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285
|
+
and self.physiology_time_stamp == other.physiology_time_stamp
|
|
286
|
+
and self.channel_order == other.channel_order
|
|
287
|
+
and self.discard_pre == other.discard_pre
|
|
288
|
+
and self.discard_post == other.discard_post
|
|
289
|
+
and self.center_sample == other.center_sample
|
|
290
|
+
and self.encoding_space_ref == other.encoding_space_ref
|
|
291
|
+
and self.sample_time_us == other.sample_time_us
|
|
292
|
+
and yardl.structural_equal(self.position, other.position)
|
|
293
|
+
and yardl.structural_equal(self.read_dir, other.read_dir)
|
|
294
|
+
and yardl.structural_equal(self.phase_dir, other.phase_dir)
|
|
295
|
+
and yardl.structural_equal(self.slice_dir, other.slice_dir)
|
|
296
|
+
and yardl.structural_equal(self.patient_table_position, other.patient_table_position)
|
|
297
|
+
and self.user_int == other.user_int
|
|
298
|
+
and self.user_float == other.user_float
|
|
299
|
+
and yardl.structural_equal(self.data, other.data)
|
|
300
|
+
and yardl.structural_equal(self.trajectory, other.trajectory)
|
|
301
|
+
)
|
|
302
|
+
|
|
303
|
+
def __str__(self) -> str:
|
|
304
|
+
return f"Acquisition(flags={self.flags}, idx={self.idx}, measurementUid={self.measurement_uid}, scanCounter={self.scan_counter}, acquisitionTimeStamp={self.acquisition_time_stamp}, physiologyTimeStamp={self.physiology_time_stamp}, channelOrder={self.channel_order}, discardPre={self.discard_pre}, discardPost={self.discard_post}, centerSample={self.center_sample}, encodingSpaceRef={self.encoding_space_ref}, sampleTimeUs={self.sample_time_us}, position={self.position}, readDir={self.read_dir}, phaseDir={self.phase_dir}, sliceDir={self.slice_dir}, patientTablePosition={self.patient_table_position}, userInt={self.user_int}, userFloat={self.user_float}, data={self.data}, trajectory={self.trajectory})"
|
|
305
|
+
|
|
306
|
+
def __repr__(self) -> str:
|
|
307
|
+
return f"Acquisition(flags={repr(self.flags)}, idx={repr(self.idx)}, measurementUid={repr(self.measurement_uid)}, scanCounter={repr(self.scan_counter)}, acquisitionTimeStamp={repr(self.acquisition_time_stamp)}, physiologyTimeStamp={repr(self.physiology_time_stamp)}, channelOrder={repr(self.channel_order)}, discardPre={repr(self.discard_pre)}, discardPost={repr(self.discard_post)}, centerSample={repr(self.center_sample)}, encodingSpaceRef={repr(self.encoding_space_ref)}, sampleTimeUs={repr(self.sample_time_us)}, position={repr(self.position)}, readDir={repr(self.read_dir)}, phaseDir={repr(self.phase_dir)}, sliceDir={repr(self.slice_dir)}, patientTablePosition={repr(self.patient_table_position)}, userInt={repr(self.user_int)}, userFloat={repr(self.user_float)}, data={repr(self.data)}, trajectory={repr(self.trajectory)})"
|
|
308
|
+
|
|
309
|
+
|
|
310
|
+
class PatientGender(yardl.OutOfRangeEnum):
|
|
311
|
+
M = 0
|
|
312
|
+
F = 1
|
|
313
|
+
O = 2
|
|
314
|
+
|
|
315
|
+
class SubjectInformationType:
|
|
316
|
+
patient_name: typing.Optional[str]
|
|
317
|
+
patient_weight_kg: typing.Optional[yardl.Float32]
|
|
318
|
+
patient_height_m: typing.Optional[yardl.Float32]
|
|
319
|
+
patient_id: typing.Optional[str]
|
|
320
|
+
patient_birthdate: typing.Optional[datetime.date]
|
|
321
|
+
patient_gender: typing.Optional[PatientGender]
|
|
322
|
+
|
|
323
|
+
def __init__(self, *,
|
|
324
|
+
patient_name: typing.Optional[str] = None,
|
|
325
|
+
patient_weight_kg: typing.Optional[yardl.Float32] = None,
|
|
326
|
+
patient_height_m: typing.Optional[yardl.Float32] = None,
|
|
327
|
+
patient_id: typing.Optional[str] = None,
|
|
328
|
+
patient_birthdate: typing.Optional[datetime.date] = None,
|
|
329
|
+
patient_gender: typing.Optional[PatientGender] = None,
|
|
330
|
+
):
|
|
331
|
+
self.patient_name = patient_name
|
|
332
|
+
self.patient_weight_kg = patient_weight_kg
|
|
333
|
+
self.patient_height_m = patient_height_m
|
|
334
|
+
self.patient_id = patient_id
|
|
335
|
+
self.patient_birthdate = patient_birthdate
|
|
336
|
+
self.patient_gender = patient_gender
|
|
337
|
+
|
|
338
|
+
def __eq__(self, other: object) -> bool:
|
|
339
|
+
return (
|
|
340
|
+
isinstance(other, SubjectInformationType)
|
|
341
|
+
and self.patient_name == other.patient_name
|
|
342
|
+
and self.patient_weight_kg == other.patient_weight_kg
|
|
343
|
+
and self.patient_height_m == other.patient_height_m
|
|
344
|
+
and self.patient_id == other.patient_id
|
|
345
|
+
and self.patient_birthdate == other.patient_birthdate
|
|
346
|
+
and self.patient_gender == other.patient_gender
|
|
347
|
+
)
|
|
348
|
+
|
|
349
|
+
def __str__(self) -> str:
|
|
350
|
+
return f"SubjectInformationType(patientName={self.patient_name}, patientWeightKg={self.patient_weight_kg}, patientHeightM={self.patient_height_m}, patientID={self.patient_id}, patientBirthdate={self.patient_birthdate}, patientGender={self.patient_gender})"
|
|
351
|
+
|
|
352
|
+
def __repr__(self) -> str:
|
|
353
|
+
return f"SubjectInformationType(patientName={repr(self.patient_name)}, patientWeightKg={repr(self.patient_weight_kg)}, patientHeightM={repr(self.patient_height_m)}, patientID={repr(self.patient_id)}, patientBirthdate={repr(self.patient_birthdate)}, patientGender={repr(self.patient_gender)})"
|
|
354
|
+
|
|
355
|
+
|
|
356
|
+
class StudyInformationType:
|
|
357
|
+
study_date: typing.Optional[datetime.date]
|
|
358
|
+
study_time: typing.Optional[yardl.Time]
|
|
359
|
+
study_id: typing.Optional[str]
|
|
360
|
+
accession_number: typing.Optional[yardl.Int64]
|
|
361
|
+
referring_physician_name: typing.Optional[str]
|
|
362
|
+
study_description: typing.Optional[str]
|
|
363
|
+
study_instance_uid: typing.Optional[str]
|
|
364
|
+
body_part_examined: typing.Optional[str]
|
|
365
|
+
|
|
366
|
+
def __init__(self, *,
|
|
367
|
+
study_date: typing.Optional[datetime.date] = None,
|
|
368
|
+
study_time: typing.Optional[yardl.Time] = None,
|
|
369
|
+
study_id: typing.Optional[str] = None,
|
|
370
|
+
accession_number: typing.Optional[yardl.Int64] = None,
|
|
371
|
+
referring_physician_name: typing.Optional[str] = None,
|
|
372
|
+
study_description: typing.Optional[str] = None,
|
|
373
|
+
study_instance_uid: typing.Optional[str] = None,
|
|
374
|
+
body_part_examined: typing.Optional[str] = None,
|
|
375
|
+
):
|
|
376
|
+
self.study_date = study_date
|
|
377
|
+
self.study_time = study_time
|
|
378
|
+
self.study_id = study_id
|
|
379
|
+
self.accession_number = accession_number
|
|
380
|
+
self.referring_physician_name = referring_physician_name
|
|
381
|
+
self.study_description = study_description
|
|
382
|
+
self.study_instance_uid = study_instance_uid
|
|
383
|
+
self.body_part_examined = body_part_examined
|
|
384
|
+
|
|
385
|
+
def __eq__(self, other: object) -> bool:
|
|
386
|
+
return (
|
|
387
|
+
isinstance(other, StudyInformationType)
|
|
388
|
+
and self.study_date == other.study_date
|
|
389
|
+
and self.study_time == other.study_time
|
|
390
|
+
and self.study_id == other.study_id
|
|
391
|
+
and self.accession_number == other.accession_number
|
|
392
|
+
and self.referring_physician_name == other.referring_physician_name
|
|
393
|
+
and self.study_description == other.study_description
|
|
394
|
+
and self.study_instance_uid == other.study_instance_uid
|
|
395
|
+
and self.body_part_examined == other.body_part_examined
|
|
396
|
+
)
|
|
397
|
+
|
|
398
|
+
def __str__(self) -> str:
|
|
399
|
+
return f"StudyInformationType(studyDate={self.study_date}, studyTime={self.study_time}, studyID={self.study_id}, accessionNumber={self.accession_number}, referringPhysicianName={self.referring_physician_name}, studyDescription={self.study_description}, studyInstanceUID={self.study_instance_uid}, bodyPartExamined={self.body_part_examined})"
|
|
400
|
+
|
|
401
|
+
def __repr__(self) -> str:
|
|
402
|
+
return f"StudyInformationType(studyDate={repr(self.study_date)}, studyTime={repr(self.study_time)}, studyID={repr(self.study_id)}, accessionNumber={repr(self.accession_number)}, referringPhysicianName={repr(self.referring_physician_name)}, studyDescription={repr(self.study_description)}, studyInstanceUID={repr(self.study_instance_uid)}, bodyPartExamined={repr(self.body_part_examined)})"
|
|
403
|
+
|
|
404
|
+
|
|
405
|
+
class PatientPosition(yardl.OutOfRangeEnum):
|
|
406
|
+
H_FP = 0
|
|
407
|
+
H_FS = 1
|
|
408
|
+
H_FDR = 2
|
|
409
|
+
H_FDL = 3
|
|
410
|
+
F_FP = 4
|
|
411
|
+
F_FS = 5
|
|
412
|
+
F_FDR = 6
|
|
413
|
+
F_FDL = 7
|
|
414
|
+
|
|
415
|
+
class ThreeDimensionalFloat:
|
|
416
|
+
x: yardl.Float32
|
|
417
|
+
y: yardl.Float32
|
|
418
|
+
z: yardl.Float32
|
|
419
|
+
|
|
420
|
+
def __init__(self, *,
|
|
421
|
+
x: yardl.Float32 = 0.0,
|
|
422
|
+
y: yardl.Float32 = 0.0,
|
|
423
|
+
z: yardl.Float32 = 0.0,
|
|
424
|
+
):
|
|
425
|
+
self.x = x
|
|
426
|
+
self.y = y
|
|
427
|
+
self.z = z
|
|
428
|
+
|
|
429
|
+
def __eq__(self, other: object) -> bool:
|
|
430
|
+
return (
|
|
431
|
+
isinstance(other, ThreeDimensionalFloat)
|
|
432
|
+
and self.x == other.x
|
|
433
|
+
and self.y == other.y
|
|
434
|
+
and self.z == other.z
|
|
435
|
+
)
|
|
436
|
+
|
|
437
|
+
def __str__(self) -> str:
|
|
438
|
+
return f"ThreeDimensionalFloat(x={self.x}, y={self.y}, z={self.z})"
|
|
439
|
+
|
|
440
|
+
def __repr__(self) -> str:
|
|
441
|
+
return f"ThreeDimensionalFloat(x={repr(self.x)}, y={repr(self.y)}, z={repr(self.z)})"
|
|
442
|
+
|
|
443
|
+
|
|
444
|
+
class MeasurementDependencyType:
|
|
445
|
+
dependency_type: str
|
|
446
|
+
measurement_id: str
|
|
447
|
+
|
|
448
|
+
def __init__(self, *,
|
|
449
|
+
dependency_type: str = "",
|
|
450
|
+
measurement_id: str = "",
|
|
451
|
+
):
|
|
452
|
+
self.dependency_type = dependency_type
|
|
453
|
+
self.measurement_id = measurement_id
|
|
454
|
+
|
|
455
|
+
def __eq__(self, other: object) -> bool:
|
|
456
|
+
return (
|
|
457
|
+
isinstance(other, MeasurementDependencyType)
|
|
458
|
+
and self.dependency_type == other.dependency_type
|
|
459
|
+
and self.measurement_id == other.measurement_id
|
|
460
|
+
)
|
|
461
|
+
|
|
462
|
+
def __str__(self) -> str:
|
|
463
|
+
return f"MeasurementDependencyType(dependencyType={self.dependency_type}, measurementID={self.measurement_id})"
|
|
464
|
+
|
|
465
|
+
def __repr__(self) -> str:
|
|
466
|
+
return f"MeasurementDependencyType(dependencyType={repr(self.dependency_type)}, measurementID={repr(self.measurement_id)})"
|
|
467
|
+
|
|
468
|
+
|
|
469
|
+
class ReferencedImageSequenceType:
|
|
470
|
+
referenced_sop_instance_uid: list[str]
|
|
471
|
+
|
|
472
|
+
def __init__(self, *,
|
|
473
|
+
referenced_sop_instance_uid: typing.Optional[list[str]] = None,
|
|
474
|
+
):
|
|
475
|
+
self.referenced_sop_instance_uid = referenced_sop_instance_uid if referenced_sop_instance_uid is not None else []
|
|
476
|
+
|
|
477
|
+
def __eq__(self, other: object) -> bool:
|
|
478
|
+
return (
|
|
479
|
+
isinstance(other, ReferencedImageSequenceType)
|
|
480
|
+
and self.referenced_sop_instance_uid == other.referenced_sop_instance_uid
|
|
481
|
+
)
|
|
482
|
+
|
|
483
|
+
def __str__(self) -> str:
|
|
484
|
+
return f"ReferencedImageSequenceType(referencedSOPInstanceUID={self.referenced_sop_instance_uid})"
|
|
485
|
+
|
|
486
|
+
def __repr__(self) -> str:
|
|
487
|
+
return f"ReferencedImageSequenceType(referencedSOPInstanceUID={repr(self.referenced_sop_instance_uid)})"
|
|
488
|
+
|
|
489
|
+
|
|
490
|
+
class MeasurementInformationType:
|
|
491
|
+
measurement_id: typing.Optional[str]
|
|
492
|
+
series_date: typing.Optional[datetime.date]
|
|
493
|
+
series_time: typing.Optional[yardl.Time]
|
|
494
|
+
patient_position: PatientPosition
|
|
495
|
+
relative_table_position: typing.Optional[ThreeDimensionalFloat]
|
|
496
|
+
initial_series_number: typing.Optional[yardl.Int64]
|
|
497
|
+
protocol_name: typing.Optional[str]
|
|
498
|
+
sequence_name: typing.Optional[str]
|
|
499
|
+
series_description: typing.Optional[str]
|
|
500
|
+
measurement_dependency: list[MeasurementDependencyType]
|
|
501
|
+
series_instance_uid_root: typing.Optional[str]
|
|
502
|
+
frame_of_reference_uid: typing.Optional[str]
|
|
503
|
+
referenced_image_sequence: typing.Optional[ReferencedImageSequenceType]
|
|
504
|
+
|
|
505
|
+
def __init__(self, *,
|
|
506
|
+
measurement_id: typing.Optional[str] = None,
|
|
507
|
+
series_date: typing.Optional[datetime.date] = None,
|
|
508
|
+
series_time: typing.Optional[yardl.Time] = None,
|
|
509
|
+
patient_position: PatientPosition = PatientPosition.H_FP,
|
|
510
|
+
relative_table_position: typing.Optional[ThreeDimensionalFloat] = None,
|
|
511
|
+
initial_series_number: typing.Optional[yardl.Int64] = None,
|
|
512
|
+
protocol_name: typing.Optional[str] = None,
|
|
513
|
+
sequence_name: typing.Optional[str] = None,
|
|
514
|
+
series_description: typing.Optional[str] = None,
|
|
515
|
+
measurement_dependency: typing.Optional[list[MeasurementDependencyType]] = None,
|
|
516
|
+
series_instance_uid_root: typing.Optional[str] = None,
|
|
517
|
+
frame_of_reference_uid: typing.Optional[str] = None,
|
|
518
|
+
referenced_image_sequence: typing.Optional[ReferencedImageSequenceType] = None,
|
|
519
|
+
):
|
|
520
|
+
self.measurement_id = measurement_id
|
|
521
|
+
self.series_date = series_date
|
|
522
|
+
self.series_time = series_time
|
|
523
|
+
self.patient_position = patient_position
|
|
524
|
+
self.relative_table_position = relative_table_position
|
|
525
|
+
self.initial_series_number = initial_series_number
|
|
526
|
+
self.protocol_name = protocol_name
|
|
527
|
+
self.sequence_name = sequence_name
|
|
528
|
+
self.series_description = series_description
|
|
529
|
+
self.measurement_dependency = measurement_dependency if measurement_dependency is not None else []
|
|
530
|
+
self.series_instance_uid_root = series_instance_uid_root
|
|
531
|
+
self.frame_of_reference_uid = frame_of_reference_uid
|
|
532
|
+
self.referenced_image_sequence = referenced_image_sequence
|
|
533
|
+
|
|
534
|
+
def __eq__(self, other: object) -> bool:
|
|
535
|
+
return (
|
|
536
|
+
isinstance(other, MeasurementInformationType)
|
|
537
|
+
and self.measurement_id == other.measurement_id
|
|
538
|
+
and self.series_date == other.series_date
|
|
539
|
+
and self.series_time == other.series_time
|
|
540
|
+
and self.patient_position == other.patient_position
|
|
541
|
+
and self.relative_table_position == other.relative_table_position
|
|
542
|
+
and self.initial_series_number == other.initial_series_number
|
|
543
|
+
and self.protocol_name == other.protocol_name
|
|
544
|
+
and self.sequence_name == other.sequence_name
|
|
545
|
+
and self.series_description == other.series_description
|
|
546
|
+
and self.measurement_dependency == other.measurement_dependency
|
|
547
|
+
and self.series_instance_uid_root == other.series_instance_uid_root
|
|
548
|
+
and self.frame_of_reference_uid == other.frame_of_reference_uid
|
|
549
|
+
and self.referenced_image_sequence == other.referenced_image_sequence
|
|
550
|
+
)
|
|
551
|
+
|
|
552
|
+
def __str__(self) -> str:
|
|
553
|
+
return f"MeasurementInformationType(measurementID={self.measurement_id}, seriesDate={self.series_date}, seriesTime={self.series_time}, patientPosition={self.patient_position}, relativeTablePosition={self.relative_table_position}, initialSeriesNumber={self.initial_series_number}, protocolName={self.protocol_name}, sequenceName={self.sequence_name}, seriesDescription={self.series_description}, measurementDependency={self.measurement_dependency}, seriesInstanceUIDRoot={self.series_instance_uid_root}, frameOfReferenceUID={self.frame_of_reference_uid}, referencedImageSequence={self.referenced_image_sequence})"
|
|
554
|
+
|
|
555
|
+
def __repr__(self) -> str:
|
|
556
|
+
return f"MeasurementInformationType(measurementID={repr(self.measurement_id)}, seriesDate={repr(self.series_date)}, seriesTime={repr(self.series_time)}, patientPosition={repr(self.patient_position)}, relativeTablePosition={repr(self.relative_table_position)}, initialSeriesNumber={repr(self.initial_series_number)}, protocolName={repr(self.protocol_name)}, sequenceName={repr(self.sequence_name)}, seriesDescription={repr(self.series_description)}, measurementDependency={repr(self.measurement_dependency)}, seriesInstanceUIDRoot={repr(self.series_instance_uid_root)}, frameOfReferenceUID={repr(self.frame_of_reference_uid)}, referencedImageSequence={repr(self.referenced_image_sequence)})"
|
|
557
|
+
|
|
558
|
+
|
|
559
|
+
class CoilLabelType:
|
|
560
|
+
coil_number: yardl.UInt32
|
|
561
|
+
coil_name: str
|
|
562
|
+
|
|
563
|
+
def __init__(self, *,
|
|
564
|
+
coil_number: yardl.UInt32 = 0,
|
|
565
|
+
coil_name: str = "",
|
|
566
|
+
):
|
|
567
|
+
self.coil_number = coil_number
|
|
568
|
+
self.coil_name = coil_name
|
|
569
|
+
|
|
570
|
+
def __eq__(self, other: object) -> bool:
|
|
571
|
+
return (
|
|
572
|
+
isinstance(other, CoilLabelType)
|
|
573
|
+
and self.coil_number == other.coil_number
|
|
574
|
+
and self.coil_name == other.coil_name
|
|
575
|
+
)
|
|
576
|
+
|
|
577
|
+
def __str__(self) -> str:
|
|
578
|
+
return f"CoilLabelType(coilNumber={self.coil_number}, coilName={self.coil_name})"
|
|
579
|
+
|
|
580
|
+
def __repr__(self) -> str:
|
|
581
|
+
return f"CoilLabelType(coilNumber={repr(self.coil_number)}, coilName={repr(self.coil_name)})"
|
|
582
|
+
|
|
583
|
+
|
|
584
|
+
class AcquisitionSystemInformationType:
|
|
585
|
+
system_vendor: typing.Optional[str]
|
|
586
|
+
system_model: typing.Optional[str]
|
|
587
|
+
system_field_strength_t: typing.Optional[yardl.Float32]
|
|
588
|
+
relative_receiver_noise_bandwidth: typing.Optional[yardl.Float32]
|
|
589
|
+
receiver_channels: typing.Optional[yardl.UInt32]
|
|
590
|
+
coil_label: list[CoilLabelType]
|
|
591
|
+
institution_name: typing.Optional[str]
|
|
592
|
+
station_name: typing.Optional[str]
|
|
593
|
+
device_id: typing.Optional[str]
|
|
594
|
+
device_serial_number: typing.Optional[str]
|
|
595
|
+
|
|
596
|
+
def __init__(self, *,
|
|
597
|
+
system_vendor: typing.Optional[str] = None,
|
|
598
|
+
system_model: typing.Optional[str] = None,
|
|
599
|
+
system_field_strength_t: typing.Optional[yardl.Float32] = None,
|
|
600
|
+
relative_receiver_noise_bandwidth: typing.Optional[yardl.Float32] = None,
|
|
601
|
+
receiver_channels: typing.Optional[yardl.UInt32] = None,
|
|
602
|
+
coil_label: typing.Optional[list[CoilLabelType]] = None,
|
|
603
|
+
institution_name: typing.Optional[str] = None,
|
|
604
|
+
station_name: typing.Optional[str] = None,
|
|
605
|
+
device_id: typing.Optional[str] = None,
|
|
606
|
+
device_serial_number: typing.Optional[str] = None,
|
|
607
|
+
):
|
|
608
|
+
self.system_vendor = system_vendor
|
|
609
|
+
self.system_model = system_model
|
|
610
|
+
self.system_field_strength_t = system_field_strength_t
|
|
611
|
+
self.relative_receiver_noise_bandwidth = relative_receiver_noise_bandwidth
|
|
612
|
+
self.receiver_channels = receiver_channels
|
|
613
|
+
self.coil_label = coil_label if coil_label is not None else []
|
|
614
|
+
self.institution_name = institution_name
|
|
615
|
+
self.station_name = station_name
|
|
616
|
+
self.device_id = device_id
|
|
617
|
+
self.device_serial_number = device_serial_number
|
|
618
|
+
|
|
619
|
+
def __eq__(self, other: object) -> bool:
|
|
620
|
+
return (
|
|
621
|
+
isinstance(other, AcquisitionSystemInformationType)
|
|
622
|
+
and self.system_vendor == other.system_vendor
|
|
623
|
+
and self.system_model == other.system_model
|
|
624
|
+
and self.system_field_strength_t == other.system_field_strength_t
|
|
625
|
+
and self.relative_receiver_noise_bandwidth == other.relative_receiver_noise_bandwidth
|
|
626
|
+
and self.receiver_channels == other.receiver_channels
|
|
627
|
+
and self.coil_label == other.coil_label
|
|
628
|
+
and self.institution_name == other.institution_name
|
|
629
|
+
and self.station_name == other.station_name
|
|
630
|
+
and self.device_id == other.device_id
|
|
631
|
+
and self.device_serial_number == other.device_serial_number
|
|
632
|
+
)
|
|
633
|
+
|
|
634
|
+
def __str__(self) -> str:
|
|
635
|
+
return f"AcquisitionSystemInformationType(systemVendor={self.system_vendor}, systemModel={self.system_model}, systemFieldStrengthT={self.system_field_strength_t}, relativeReceiverNoiseBandwidth={self.relative_receiver_noise_bandwidth}, receiverChannels={self.receiver_channels}, coilLabel={self.coil_label}, institutionName={self.institution_name}, stationName={self.station_name}, deviceID={self.device_id}, deviceSerialNumber={self.device_serial_number})"
|
|
636
|
+
|
|
637
|
+
def __repr__(self) -> str:
|
|
638
|
+
return f"AcquisitionSystemInformationType(systemVendor={repr(self.system_vendor)}, systemModel={repr(self.system_model)}, systemFieldStrengthT={repr(self.system_field_strength_t)}, relativeReceiverNoiseBandwidth={repr(self.relative_receiver_noise_bandwidth)}, receiverChannels={repr(self.receiver_channels)}, coilLabel={repr(self.coil_label)}, institutionName={repr(self.institution_name)}, stationName={repr(self.station_name)}, deviceID={repr(self.device_id)}, deviceSerialNumber={repr(self.device_serial_number)})"
|
|
639
|
+
|
|
640
|
+
|
|
641
|
+
class ExperimentalConditionsType:
|
|
642
|
+
h1resonance_frequency_hz: yardl.Int64
|
|
643
|
+
|
|
644
|
+
def __init__(self, *,
|
|
645
|
+
h1resonance_frequency_hz: yardl.Int64 = 0,
|
|
646
|
+
):
|
|
647
|
+
self.h1resonance_frequency_hz = h1resonance_frequency_hz
|
|
648
|
+
|
|
649
|
+
def __eq__(self, other: object) -> bool:
|
|
650
|
+
return (
|
|
651
|
+
isinstance(other, ExperimentalConditionsType)
|
|
652
|
+
and self.h1resonance_frequency_hz == other.h1resonance_frequency_hz
|
|
653
|
+
)
|
|
654
|
+
|
|
655
|
+
def __str__(self) -> str:
|
|
656
|
+
return f"ExperimentalConditionsType(h1resonanceFrequencyHz={self.h1resonance_frequency_hz})"
|
|
657
|
+
|
|
658
|
+
def __repr__(self) -> str:
|
|
659
|
+
return f"ExperimentalConditionsType(h1resonanceFrequencyHz={repr(self.h1resonance_frequency_hz)})"
|
|
660
|
+
|
|
661
|
+
|
|
662
|
+
class MatrixSizeType:
|
|
663
|
+
x: yardl.UInt32
|
|
664
|
+
y: yardl.UInt32
|
|
665
|
+
z: yardl.UInt32
|
|
666
|
+
|
|
667
|
+
def __init__(self, *,
|
|
668
|
+
x: yardl.UInt32 = 0,
|
|
669
|
+
y: yardl.UInt32 = 0,
|
|
670
|
+
z: yardl.UInt32 = 0,
|
|
671
|
+
):
|
|
672
|
+
self.x = x
|
|
673
|
+
self.y = y
|
|
674
|
+
self.z = z
|
|
675
|
+
|
|
676
|
+
def __eq__(self, other: object) -> bool:
|
|
677
|
+
return (
|
|
678
|
+
isinstance(other, MatrixSizeType)
|
|
679
|
+
and self.x == other.x
|
|
680
|
+
and self.y == other.y
|
|
681
|
+
and self.z == other.z
|
|
682
|
+
)
|
|
683
|
+
|
|
684
|
+
def __str__(self) -> str:
|
|
685
|
+
return f"MatrixSizeType(x={self.x}, y={self.y}, z={self.z})"
|
|
686
|
+
|
|
687
|
+
def __repr__(self) -> str:
|
|
688
|
+
return f"MatrixSizeType(x={repr(self.x)}, y={repr(self.y)}, z={repr(self.z)})"
|
|
689
|
+
|
|
690
|
+
|
|
691
|
+
class FieldOfViewMm:
|
|
692
|
+
x: yardl.Float32
|
|
693
|
+
y: yardl.Float32
|
|
694
|
+
z: yardl.Float32
|
|
695
|
+
|
|
696
|
+
def __init__(self, *,
|
|
697
|
+
x: yardl.Float32 = 0.0,
|
|
698
|
+
y: yardl.Float32 = 0.0,
|
|
699
|
+
z: yardl.Float32 = 0.0,
|
|
700
|
+
):
|
|
701
|
+
self.x = x
|
|
702
|
+
self.y = y
|
|
703
|
+
self.z = z
|
|
704
|
+
|
|
705
|
+
def __eq__(self, other: object) -> bool:
|
|
706
|
+
return (
|
|
707
|
+
isinstance(other, FieldOfViewMm)
|
|
708
|
+
and self.x == other.x
|
|
709
|
+
and self.y == other.y
|
|
710
|
+
and self.z == other.z
|
|
711
|
+
)
|
|
712
|
+
|
|
713
|
+
def __str__(self) -> str:
|
|
714
|
+
return f"FieldOfViewMm(x={self.x}, y={self.y}, z={self.z})"
|
|
715
|
+
|
|
716
|
+
def __repr__(self) -> str:
|
|
717
|
+
return f"FieldOfViewMm(x={repr(self.x)}, y={repr(self.y)}, z={repr(self.z)})"
|
|
718
|
+
|
|
719
|
+
|
|
720
|
+
class EncodingSpaceType:
|
|
721
|
+
matrix_size: MatrixSizeType
|
|
722
|
+
field_of_view_mm: FieldOfViewMm
|
|
723
|
+
|
|
724
|
+
def __init__(self, *,
|
|
725
|
+
matrix_size: typing.Optional[MatrixSizeType] = None,
|
|
726
|
+
field_of_view_mm: typing.Optional[FieldOfViewMm] = None,
|
|
727
|
+
):
|
|
728
|
+
self.matrix_size = matrix_size if matrix_size is not None else MatrixSizeType()
|
|
729
|
+
self.field_of_view_mm = field_of_view_mm if field_of_view_mm is not None else FieldOfViewMm()
|
|
730
|
+
|
|
731
|
+
def __eq__(self, other: object) -> bool:
|
|
732
|
+
return (
|
|
733
|
+
isinstance(other, EncodingSpaceType)
|
|
734
|
+
and self.matrix_size == other.matrix_size
|
|
735
|
+
and self.field_of_view_mm == other.field_of_view_mm
|
|
736
|
+
)
|
|
737
|
+
|
|
738
|
+
def __str__(self) -> str:
|
|
739
|
+
return f"EncodingSpaceType(matrixSize={self.matrix_size}, fieldOfViewMm={self.field_of_view_mm})"
|
|
740
|
+
|
|
741
|
+
def __repr__(self) -> str:
|
|
742
|
+
return f"EncodingSpaceType(matrixSize={repr(self.matrix_size)}, fieldOfViewMm={repr(self.field_of_view_mm)})"
|
|
743
|
+
|
|
744
|
+
|
|
745
|
+
class LimitType:
|
|
746
|
+
minimum: yardl.UInt32
|
|
747
|
+
maximum: yardl.UInt32
|
|
748
|
+
center: yardl.UInt32
|
|
749
|
+
|
|
750
|
+
def __init__(self, *,
|
|
751
|
+
minimum: yardl.UInt32 = 0,
|
|
752
|
+
maximum: yardl.UInt32 = 0,
|
|
753
|
+
center: yardl.UInt32 = 0,
|
|
754
|
+
):
|
|
755
|
+
self.minimum = minimum
|
|
756
|
+
self.maximum = maximum
|
|
757
|
+
self.center = center
|
|
758
|
+
|
|
759
|
+
def __eq__(self, other: object) -> bool:
|
|
760
|
+
return (
|
|
761
|
+
isinstance(other, LimitType)
|
|
762
|
+
and self.minimum == other.minimum
|
|
763
|
+
and self.maximum == other.maximum
|
|
764
|
+
and self.center == other.center
|
|
765
|
+
)
|
|
766
|
+
|
|
767
|
+
def __str__(self) -> str:
|
|
768
|
+
return f"LimitType(minimum={self.minimum}, maximum={self.maximum}, center={self.center})"
|
|
769
|
+
|
|
770
|
+
def __repr__(self) -> str:
|
|
771
|
+
return f"LimitType(minimum={repr(self.minimum)}, maximum={repr(self.maximum)}, center={repr(self.center)})"
|
|
772
|
+
|
|
773
|
+
|
|
774
|
+
class EncodingLimitsType:
|
|
775
|
+
kspace_encoding_step_0: typing.Optional[LimitType]
|
|
776
|
+
kspace_encoding_step_1: typing.Optional[LimitType]
|
|
777
|
+
kspace_encoding_step_2: typing.Optional[LimitType]
|
|
778
|
+
average: typing.Optional[LimitType]
|
|
779
|
+
slice: typing.Optional[LimitType]
|
|
780
|
+
contrast: typing.Optional[LimitType]
|
|
781
|
+
phase: typing.Optional[LimitType]
|
|
782
|
+
repetition: typing.Optional[LimitType]
|
|
783
|
+
set: typing.Optional[LimitType]
|
|
784
|
+
segment: typing.Optional[LimitType]
|
|
785
|
+
user_0: typing.Optional[LimitType]
|
|
786
|
+
user_1: typing.Optional[LimitType]
|
|
787
|
+
user_2: typing.Optional[LimitType]
|
|
788
|
+
user_3: typing.Optional[LimitType]
|
|
789
|
+
user_4: typing.Optional[LimitType]
|
|
790
|
+
user_5: typing.Optional[LimitType]
|
|
791
|
+
user_6: typing.Optional[LimitType]
|
|
792
|
+
user_7: typing.Optional[LimitType]
|
|
793
|
+
|
|
794
|
+
def __init__(self, *,
|
|
795
|
+
kspace_encoding_step_0: typing.Optional[LimitType] = None,
|
|
796
|
+
kspace_encoding_step_1: typing.Optional[LimitType] = None,
|
|
797
|
+
kspace_encoding_step_2: typing.Optional[LimitType] = None,
|
|
798
|
+
average: typing.Optional[LimitType] = None,
|
|
799
|
+
slice: typing.Optional[LimitType] = None,
|
|
800
|
+
contrast: typing.Optional[LimitType] = None,
|
|
801
|
+
phase: typing.Optional[LimitType] = None,
|
|
802
|
+
repetition: typing.Optional[LimitType] = None,
|
|
803
|
+
set: typing.Optional[LimitType] = None,
|
|
804
|
+
segment: typing.Optional[LimitType] = None,
|
|
805
|
+
user_0: typing.Optional[LimitType] = None,
|
|
806
|
+
user_1: typing.Optional[LimitType] = None,
|
|
807
|
+
user_2: typing.Optional[LimitType] = None,
|
|
808
|
+
user_3: typing.Optional[LimitType] = None,
|
|
809
|
+
user_4: typing.Optional[LimitType] = None,
|
|
810
|
+
user_5: typing.Optional[LimitType] = None,
|
|
811
|
+
user_6: typing.Optional[LimitType] = None,
|
|
812
|
+
user_7: typing.Optional[LimitType] = None,
|
|
813
|
+
):
|
|
814
|
+
self.kspace_encoding_step_0 = kspace_encoding_step_0
|
|
815
|
+
self.kspace_encoding_step_1 = kspace_encoding_step_1
|
|
816
|
+
self.kspace_encoding_step_2 = kspace_encoding_step_2
|
|
817
|
+
self.average = average
|
|
818
|
+
self.slice = slice
|
|
819
|
+
self.contrast = contrast
|
|
820
|
+
self.phase = phase
|
|
821
|
+
self.repetition = repetition
|
|
822
|
+
self.set = set
|
|
823
|
+
self.segment = segment
|
|
824
|
+
self.user_0 = user_0
|
|
825
|
+
self.user_1 = user_1
|
|
826
|
+
self.user_2 = user_2
|
|
827
|
+
self.user_3 = user_3
|
|
828
|
+
self.user_4 = user_4
|
|
829
|
+
self.user_5 = user_5
|
|
830
|
+
self.user_6 = user_6
|
|
831
|
+
self.user_7 = user_7
|
|
832
|
+
|
|
833
|
+
def __eq__(self, other: object) -> bool:
|
|
834
|
+
return (
|
|
835
|
+
isinstance(other, EncodingLimitsType)
|
|
836
|
+
and self.kspace_encoding_step_0 == other.kspace_encoding_step_0
|
|
837
|
+
and self.kspace_encoding_step_1 == other.kspace_encoding_step_1
|
|
838
|
+
and self.kspace_encoding_step_2 == other.kspace_encoding_step_2
|
|
839
|
+
and self.average == other.average
|
|
840
|
+
and self.slice == other.slice
|
|
841
|
+
and self.contrast == other.contrast
|
|
842
|
+
and self.phase == other.phase
|
|
843
|
+
and self.repetition == other.repetition
|
|
844
|
+
and self.set == other.set
|
|
845
|
+
and self.segment == other.segment
|
|
846
|
+
and self.user_0 == other.user_0
|
|
847
|
+
and self.user_1 == other.user_1
|
|
848
|
+
and self.user_2 == other.user_2
|
|
849
|
+
and self.user_3 == other.user_3
|
|
850
|
+
and self.user_4 == other.user_4
|
|
851
|
+
and self.user_5 == other.user_5
|
|
852
|
+
and self.user_6 == other.user_6
|
|
853
|
+
and self.user_7 == other.user_7
|
|
854
|
+
)
|
|
855
|
+
|
|
856
|
+
def __str__(self) -> str:
|
|
857
|
+
return f"EncodingLimitsType(kspaceEncodingStep0={self.kspace_encoding_step_0}, kspaceEncodingStep1={self.kspace_encoding_step_1}, kspaceEncodingStep2={self.kspace_encoding_step_2}, average={self.average}, slice={self.slice}, contrast={self.contrast}, phase={self.phase}, repetition={self.repetition}, set={self.set}, segment={self.segment}, user0={self.user_0}, user1={self.user_1}, user2={self.user_2}, user3={self.user_3}, user4={self.user_4}, user5={self.user_5}, user6={self.user_6}, user7={self.user_7})"
|
|
858
|
+
|
|
859
|
+
def __repr__(self) -> str:
|
|
860
|
+
return f"EncodingLimitsType(kspaceEncodingStep0={repr(self.kspace_encoding_step_0)}, kspaceEncodingStep1={repr(self.kspace_encoding_step_1)}, kspaceEncodingStep2={repr(self.kspace_encoding_step_2)}, average={repr(self.average)}, slice={repr(self.slice)}, contrast={repr(self.contrast)}, phase={repr(self.phase)}, repetition={repr(self.repetition)}, set={repr(self.set)}, segment={repr(self.segment)}, user0={repr(self.user_0)}, user1={repr(self.user_1)}, user2={repr(self.user_2)}, user3={repr(self.user_3)}, user4={repr(self.user_4)}, user5={repr(self.user_5)}, user6={repr(self.user_6)}, user7={repr(self.user_7)})"
|
|
861
|
+
|
|
862
|
+
|
|
863
|
+
class Trajectory(yardl.OutOfRangeEnum):
|
|
864
|
+
CARTESIAN = 0
|
|
865
|
+
EPI = 1
|
|
866
|
+
RADIAL = 2
|
|
867
|
+
GOLDENANGLE = 3
|
|
868
|
+
SPIRAL = 4
|
|
869
|
+
OTHER = 5
|
|
870
|
+
|
|
871
|
+
class UserParameterLongType:
|
|
872
|
+
name: str
|
|
873
|
+
value: yardl.Int64
|
|
874
|
+
|
|
875
|
+
def __init__(self, *,
|
|
876
|
+
name: str = "",
|
|
877
|
+
value: yardl.Int64 = 0,
|
|
878
|
+
):
|
|
879
|
+
self.name = name
|
|
880
|
+
self.value = value
|
|
881
|
+
|
|
882
|
+
def __eq__(self, other: object) -> bool:
|
|
883
|
+
return (
|
|
884
|
+
isinstance(other, UserParameterLongType)
|
|
885
|
+
and self.name == other.name
|
|
886
|
+
and self.value == other.value
|
|
887
|
+
)
|
|
888
|
+
|
|
889
|
+
def __str__(self) -> str:
|
|
890
|
+
return f"UserParameterLongType(name={self.name}, value={self.value})"
|
|
891
|
+
|
|
892
|
+
def __repr__(self) -> str:
|
|
893
|
+
return f"UserParameterLongType(name={repr(self.name)}, value={repr(self.value)})"
|
|
894
|
+
|
|
895
|
+
|
|
896
|
+
class UserParameterDoubleType:
|
|
897
|
+
name: str
|
|
898
|
+
value: yardl.Float64
|
|
899
|
+
|
|
900
|
+
def __init__(self, *,
|
|
901
|
+
name: str = "",
|
|
902
|
+
value: yardl.Float64 = 0.0,
|
|
903
|
+
):
|
|
904
|
+
self.name = name
|
|
905
|
+
self.value = value
|
|
906
|
+
|
|
907
|
+
def __eq__(self, other: object) -> bool:
|
|
908
|
+
return (
|
|
909
|
+
isinstance(other, UserParameterDoubleType)
|
|
910
|
+
and self.name == other.name
|
|
911
|
+
and self.value == other.value
|
|
912
|
+
)
|
|
913
|
+
|
|
914
|
+
def __str__(self) -> str:
|
|
915
|
+
return f"UserParameterDoubleType(name={self.name}, value={self.value})"
|
|
916
|
+
|
|
917
|
+
def __repr__(self) -> str:
|
|
918
|
+
return f"UserParameterDoubleType(name={repr(self.name)}, value={repr(self.value)})"
|
|
919
|
+
|
|
920
|
+
|
|
921
|
+
class UserParameterStringType:
|
|
922
|
+
name: str
|
|
923
|
+
value: str
|
|
924
|
+
|
|
925
|
+
def __init__(self, *,
|
|
926
|
+
name: str = "",
|
|
927
|
+
value: str = "",
|
|
928
|
+
):
|
|
929
|
+
self.name = name
|
|
930
|
+
self.value = value
|
|
931
|
+
|
|
932
|
+
def __eq__(self, other: object) -> bool:
|
|
933
|
+
return (
|
|
934
|
+
isinstance(other, UserParameterStringType)
|
|
935
|
+
and self.name == other.name
|
|
936
|
+
and self.value == other.value
|
|
937
|
+
)
|
|
938
|
+
|
|
939
|
+
def __str__(self) -> str:
|
|
940
|
+
return f"UserParameterStringType(name={self.name}, value={self.value})"
|
|
941
|
+
|
|
942
|
+
def __repr__(self) -> str:
|
|
943
|
+
return f"UserParameterStringType(name={repr(self.name)}, value={repr(self.value)})"
|
|
944
|
+
|
|
945
|
+
|
|
946
|
+
class TrajectoryDescriptionType:
|
|
947
|
+
identifier: str
|
|
948
|
+
user_parameter_long: list[UserParameterLongType]
|
|
949
|
+
user_parameter_double: list[UserParameterDoubleType]
|
|
950
|
+
user_parameter_string: list[UserParameterStringType]
|
|
951
|
+
comment: typing.Optional[str]
|
|
952
|
+
|
|
953
|
+
def __init__(self, *,
|
|
954
|
+
identifier: str = "",
|
|
955
|
+
user_parameter_long: typing.Optional[list[UserParameterLongType]] = None,
|
|
956
|
+
user_parameter_double: typing.Optional[list[UserParameterDoubleType]] = None,
|
|
957
|
+
user_parameter_string: typing.Optional[list[UserParameterStringType]] = None,
|
|
958
|
+
comment: typing.Optional[str] = None,
|
|
959
|
+
):
|
|
960
|
+
self.identifier = identifier
|
|
961
|
+
self.user_parameter_long = user_parameter_long if user_parameter_long is not None else []
|
|
962
|
+
self.user_parameter_double = user_parameter_double if user_parameter_double is not None else []
|
|
963
|
+
self.user_parameter_string = user_parameter_string if user_parameter_string is not None else []
|
|
964
|
+
self.comment = comment
|
|
965
|
+
|
|
966
|
+
def __eq__(self, other: object) -> bool:
|
|
967
|
+
return (
|
|
968
|
+
isinstance(other, TrajectoryDescriptionType)
|
|
969
|
+
and self.identifier == other.identifier
|
|
970
|
+
and self.user_parameter_long == other.user_parameter_long
|
|
971
|
+
and self.user_parameter_double == other.user_parameter_double
|
|
972
|
+
and self.user_parameter_string == other.user_parameter_string
|
|
973
|
+
and self.comment == other.comment
|
|
974
|
+
)
|
|
975
|
+
|
|
976
|
+
def __str__(self) -> str:
|
|
977
|
+
return f"TrajectoryDescriptionType(identifier={self.identifier}, userParameterLong={self.user_parameter_long}, userParameterDouble={self.user_parameter_double}, userParameterString={self.user_parameter_string}, comment={self.comment})"
|
|
978
|
+
|
|
979
|
+
def __repr__(self) -> str:
|
|
980
|
+
return f"TrajectoryDescriptionType(identifier={repr(self.identifier)}, userParameterLong={repr(self.user_parameter_long)}, userParameterDouble={repr(self.user_parameter_double)}, userParameterString={repr(self.user_parameter_string)}, comment={repr(self.comment)})"
|
|
981
|
+
|
|
982
|
+
|
|
983
|
+
class AccelerationFactorType:
|
|
984
|
+
kspace_encoding_step_1: yardl.UInt32
|
|
985
|
+
kspace_encoding_step_2: yardl.UInt32
|
|
986
|
+
|
|
987
|
+
def __init__(self, *,
|
|
988
|
+
kspace_encoding_step_1: yardl.UInt32 = 0,
|
|
989
|
+
kspace_encoding_step_2: yardl.UInt32 = 0,
|
|
990
|
+
):
|
|
991
|
+
self.kspace_encoding_step_1 = kspace_encoding_step_1
|
|
992
|
+
self.kspace_encoding_step_2 = kspace_encoding_step_2
|
|
993
|
+
|
|
994
|
+
def __eq__(self, other: object) -> bool:
|
|
995
|
+
return (
|
|
996
|
+
isinstance(other, AccelerationFactorType)
|
|
997
|
+
and self.kspace_encoding_step_1 == other.kspace_encoding_step_1
|
|
998
|
+
and self.kspace_encoding_step_2 == other.kspace_encoding_step_2
|
|
999
|
+
)
|
|
1000
|
+
|
|
1001
|
+
def __str__(self) -> str:
|
|
1002
|
+
return f"AccelerationFactorType(kspaceEncodingStep1={self.kspace_encoding_step_1}, kspaceEncodingStep2={self.kspace_encoding_step_2})"
|
|
1003
|
+
|
|
1004
|
+
def __repr__(self) -> str:
|
|
1005
|
+
return f"AccelerationFactorType(kspaceEncodingStep1={repr(self.kspace_encoding_step_1)}, kspaceEncodingStep2={repr(self.kspace_encoding_step_2)})"
|
|
1006
|
+
|
|
1007
|
+
|
|
1008
|
+
class CalibrationMode(yardl.OutOfRangeEnum):
|
|
1009
|
+
EMBEDDED = 0
|
|
1010
|
+
INTERLEAVED = 1
|
|
1011
|
+
SEPARATE = 2
|
|
1012
|
+
EXTERNAL = 3
|
|
1013
|
+
OTHER = 4
|
|
1014
|
+
|
|
1015
|
+
class InterleavingDimension(yardl.OutOfRangeEnum):
|
|
1016
|
+
PHASE = 0
|
|
1017
|
+
REPETITION = 1
|
|
1018
|
+
CONTRAST = 2
|
|
1019
|
+
AVERAGE = 3
|
|
1020
|
+
OTHER = 4
|
|
1021
|
+
|
|
1022
|
+
class MultibandSpacingType:
|
|
1023
|
+
d_z: list[yardl.Float32]
|
|
1024
|
+
|
|
1025
|
+
def __init__(self, *,
|
|
1026
|
+
d_z: typing.Optional[list[yardl.Float32]] = None,
|
|
1027
|
+
):
|
|
1028
|
+
self.d_z = d_z if d_z is not None else []
|
|
1029
|
+
|
|
1030
|
+
def __eq__(self, other: object) -> bool:
|
|
1031
|
+
return (
|
|
1032
|
+
isinstance(other, MultibandSpacingType)
|
|
1033
|
+
and self.d_z == other.d_z
|
|
1034
|
+
)
|
|
1035
|
+
|
|
1036
|
+
def __str__(self) -> str:
|
|
1037
|
+
return f"MultibandSpacingType(dZ={self.d_z})"
|
|
1038
|
+
|
|
1039
|
+
def __repr__(self) -> str:
|
|
1040
|
+
return f"MultibandSpacingType(dZ={repr(self.d_z)})"
|
|
1041
|
+
|
|
1042
|
+
|
|
1043
|
+
class Calibration(yardl.OutOfRangeEnum):
|
|
1044
|
+
SEPARABLE_2D = 0
|
|
1045
|
+
FULL_3D = 1
|
|
1046
|
+
OTHER = 2
|
|
1047
|
+
|
|
1048
|
+
class MultibandType:
|
|
1049
|
+
spacing: list[MultibandSpacingType]
|
|
1050
|
+
delta_kz: yardl.Float32
|
|
1051
|
+
multiband_factor: yardl.UInt32
|
|
1052
|
+
calibration: Calibration
|
|
1053
|
+
calibration_encoding: yardl.UInt64
|
|
1054
|
+
|
|
1055
|
+
def __init__(self, *,
|
|
1056
|
+
spacing: typing.Optional[list[MultibandSpacingType]] = None,
|
|
1057
|
+
delta_kz: yardl.Float32 = 0.0,
|
|
1058
|
+
multiband_factor: yardl.UInt32 = 0,
|
|
1059
|
+
calibration: Calibration = Calibration.SEPARABLE_2D,
|
|
1060
|
+
calibration_encoding: yardl.UInt64 = 0,
|
|
1061
|
+
):
|
|
1062
|
+
self.spacing = spacing if spacing is not None else []
|
|
1063
|
+
self.delta_kz = delta_kz
|
|
1064
|
+
self.multiband_factor = multiband_factor
|
|
1065
|
+
self.calibration = calibration
|
|
1066
|
+
self.calibration_encoding = calibration_encoding
|
|
1067
|
+
|
|
1068
|
+
def __eq__(self, other: object) -> bool:
|
|
1069
|
+
return (
|
|
1070
|
+
isinstance(other, MultibandType)
|
|
1071
|
+
and self.spacing == other.spacing
|
|
1072
|
+
and self.delta_kz == other.delta_kz
|
|
1073
|
+
and self.multiband_factor == other.multiband_factor
|
|
1074
|
+
and self.calibration == other.calibration
|
|
1075
|
+
and self.calibration_encoding == other.calibration_encoding
|
|
1076
|
+
)
|
|
1077
|
+
|
|
1078
|
+
def __str__(self) -> str:
|
|
1079
|
+
return f"MultibandType(spacing={self.spacing}, deltaKz={self.delta_kz}, multibandFactor={self.multiband_factor}, calibration={self.calibration}, calibrationEncoding={self.calibration_encoding})"
|
|
1080
|
+
|
|
1081
|
+
def __repr__(self) -> str:
|
|
1082
|
+
return f"MultibandType(spacing={repr(self.spacing)}, deltaKz={repr(self.delta_kz)}, multibandFactor={repr(self.multiband_factor)}, calibration={repr(self.calibration)}, calibrationEncoding={repr(self.calibration_encoding)})"
|
|
1083
|
+
|
|
1084
|
+
|
|
1085
|
+
class ParallelImagingType:
|
|
1086
|
+
acceleration_factor: AccelerationFactorType
|
|
1087
|
+
calibration_mode: typing.Optional[CalibrationMode]
|
|
1088
|
+
interleaving_dimension: typing.Optional[InterleavingDimension]
|
|
1089
|
+
multiband: typing.Optional[MultibandType]
|
|
1090
|
+
|
|
1091
|
+
def __init__(self, *,
|
|
1092
|
+
acceleration_factor: typing.Optional[AccelerationFactorType] = None,
|
|
1093
|
+
calibration_mode: typing.Optional[CalibrationMode] = None,
|
|
1094
|
+
interleaving_dimension: typing.Optional[InterleavingDimension] = None,
|
|
1095
|
+
multiband: typing.Optional[MultibandType] = None,
|
|
1096
|
+
):
|
|
1097
|
+
self.acceleration_factor = acceleration_factor if acceleration_factor is not None else AccelerationFactorType()
|
|
1098
|
+
self.calibration_mode = calibration_mode
|
|
1099
|
+
self.interleaving_dimension = interleaving_dimension
|
|
1100
|
+
self.multiband = multiband
|
|
1101
|
+
|
|
1102
|
+
def __eq__(self, other: object) -> bool:
|
|
1103
|
+
return (
|
|
1104
|
+
isinstance(other, ParallelImagingType)
|
|
1105
|
+
and self.acceleration_factor == other.acceleration_factor
|
|
1106
|
+
and self.calibration_mode == other.calibration_mode
|
|
1107
|
+
and self.interleaving_dimension == other.interleaving_dimension
|
|
1108
|
+
and self.multiband == other.multiband
|
|
1109
|
+
)
|
|
1110
|
+
|
|
1111
|
+
def __str__(self) -> str:
|
|
1112
|
+
return f"ParallelImagingType(accelerationFactor={self.acceleration_factor}, calibrationMode={self.calibration_mode}, interleavingDimension={self.interleaving_dimension}, multiband={self.multiband})"
|
|
1113
|
+
|
|
1114
|
+
def __repr__(self) -> str:
|
|
1115
|
+
return f"ParallelImagingType(accelerationFactor={repr(self.acceleration_factor)}, calibrationMode={repr(self.calibration_mode)}, interleavingDimension={repr(self.interleaving_dimension)}, multiband={repr(self.multiband)})"
|
|
1116
|
+
|
|
1117
|
+
|
|
1118
|
+
class EncodingType:
|
|
1119
|
+
encoded_space: EncodingSpaceType
|
|
1120
|
+
recon_space: EncodingSpaceType
|
|
1121
|
+
encoding_limits: EncodingLimitsType
|
|
1122
|
+
trajectory: Trajectory
|
|
1123
|
+
trajectory_description: typing.Optional[TrajectoryDescriptionType]
|
|
1124
|
+
parallel_imaging: typing.Optional[ParallelImagingType]
|
|
1125
|
+
echo_train_length: typing.Optional[yardl.Int64]
|
|
1126
|
+
|
|
1127
|
+
def __init__(self, *,
|
|
1128
|
+
encoded_space: typing.Optional[EncodingSpaceType] = None,
|
|
1129
|
+
recon_space: typing.Optional[EncodingSpaceType] = None,
|
|
1130
|
+
encoding_limits: typing.Optional[EncodingLimitsType] = None,
|
|
1131
|
+
trajectory: Trajectory = Trajectory.CARTESIAN,
|
|
1132
|
+
trajectory_description: typing.Optional[TrajectoryDescriptionType] = None,
|
|
1133
|
+
parallel_imaging: typing.Optional[ParallelImagingType] = None,
|
|
1134
|
+
echo_train_length: typing.Optional[yardl.Int64] = None,
|
|
1135
|
+
):
|
|
1136
|
+
self.encoded_space = encoded_space if encoded_space is not None else EncodingSpaceType()
|
|
1137
|
+
self.recon_space = recon_space if recon_space is not None else EncodingSpaceType()
|
|
1138
|
+
self.encoding_limits = encoding_limits if encoding_limits is not None else EncodingLimitsType()
|
|
1139
|
+
self.trajectory = trajectory
|
|
1140
|
+
self.trajectory_description = trajectory_description
|
|
1141
|
+
self.parallel_imaging = parallel_imaging
|
|
1142
|
+
self.echo_train_length = echo_train_length
|
|
1143
|
+
|
|
1144
|
+
def __eq__(self, other: object) -> bool:
|
|
1145
|
+
return (
|
|
1146
|
+
isinstance(other, EncodingType)
|
|
1147
|
+
and self.encoded_space == other.encoded_space
|
|
1148
|
+
and self.recon_space == other.recon_space
|
|
1149
|
+
and self.encoding_limits == other.encoding_limits
|
|
1150
|
+
and self.trajectory == other.trajectory
|
|
1151
|
+
and self.trajectory_description == other.trajectory_description
|
|
1152
|
+
and self.parallel_imaging == other.parallel_imaging
|
|
1153
|
+
and self.echo_train_length == other.echo_train_length
|
|
1154
|
+
)
|
|
1155
|
+
|
|
1156
|
+
def __str__(self) -> str:
|
|
1157
|
+
return f"EncodingType(encodedSpace={self.encoded_space}, reconSpace={self.recon_space}, encodingLimits={self.encoding_limits}, trajectory={self.trajectory}, trajectoryDescription={self.trajectory_description}, parallelImaging={self.parallel_imaging}, echoTrainLength={self.echo_train_length})"
|
|
1158
|
+
|
|
1159
|
+
def __repr__(self) -> str:
|
|
1160
|
+
return f"EncodingType(encodedSpace={repr(self.encoded_space)}, reconSpace={repr(self.recon_space)}, encodingLimits={repr(self.encoding_limits)}, trajectory={repr(self.trajectory)}, trajectoryDescription={repr(self.trajectory_description)}, parallelImaging={repr(self.parallel_imaging)}, echoTrainLength={repr(self.echo_train_length)})"
|
|
1161
|
+
|
|
1162
|
+
|
|
1163
|
+
class DiffusionDimension(yardl.OutOfRangeEnum):
|
|
1164
|
+
AVERAGE = 0
|
|
1165
|
+
CONTRAST = 1
|
|
1166
|
+
PHASE = 2
|
|
1167
|
+
REPETITION = 3
|
|
1168
|
+
SET = 4
|
|
1169
|
+
SEGMENT = 5
|
|
1170
|
+
USER_0 = 6
|
|
1171
|
+
USER_1 = 7
|
|
1172
|
+
USER_2 = 8
|
|
1173
|
+
USER_3 = 9
|
|
1174
|
+
USER_4 = 10
|
|
1175
|
+
USER_5 = 11
|
|
1176
|
+
USER_6 = 12
|
|
1177
|
+
USER_7 = 13
|
|
1178
|
+
|
|
1179
|
+
class GradientDirectionType:
|
|
1180
|
+
rl: yardl.Float32
|
|
1181
|
+
ap: yardl.Float32
|
|
1182
|
+
fh: yardl.Float32
|
|
1183
|
+
|
|
1184
|
+
def __init__(self, *,
|
|
1185
|
+
rl: yardl.Float32 = 0.0,
|
|
1186
|
+
ap: yardl.Float32 = 0.0,
|
|
1187
|
+
fh: yardl.Float32 = 0.0,
|
|
1188
|
+
):
|
|
1189
|
+
self.rl = rl
|
|
1190
|
+
self.ap = ap
|
|
1191
|
+
self.fh = fh
|
|
1192
|
+
|
|
1193
|
+
def __eq__(self, other: object) -> bool:
|
|
1194
|
+
return (
|
|
1195
|
+
isinstance(other, GradientDirectionType)
|
|
1196
|
+
and self.rl == other.rl
|
|
1197
|
+
and self.ap == other.ap
|
|
1198
|
+
and self.fh == other.fh
|
|
1199
|
+
)
|
|
1200
|
+
|
|
1201
|
+
def __str__(self) -> str:
|
|
1202
|
+
return f"GradientDirectionType(rl={self.rl}, ap={self.ap}, fh={self.fh})"
|
|
1203
|
+
|
|
1204
|
+
def __repr__(self) -> str:
|
|
1205
|
+
return f"GradientDirectionType(rl={repr(self.rl)}, ap={repr(self.ap)}, fh={repr(self.fh)})"
|
|
1206
|
+
|
|
1207
|
+
|
|
1208
|
+
class DiffusionType:
|
|
1209
|
+
gradient_direction: GradientDirectionType
|
|
1210
|
+
bvalue: yardl.Float32
|
|
1211
|
+
|
|
1212
|
+
def __init__(self, *,
|
|
1213
|
+
gradient_direction: typing.Optional[GradientDirectionType] = None,
|
|
1214
|
+
bvalue: yardl.Float32 = 0.0,
|
|
1215
|
+
):
|
|
1216
|
+
self.gradient_direction = gradient_direction if gradient_direction is not None else GradientDirectionType()
|
|
1217
|
+
self.bvalue = bvalue
|
|
1218
|
+
|
|
1219
|
+
def __eq__(self, other: object) -> bool:
|
|
1220
|
+
return (
|
|
1221
|
+
isinstance(other, DiffusionType)
|
|
1222
|
+
and self.gradient_direction == other.gradient_direction
|
|
1223
|
+
and self.bvalue == other.bvalue
|
|
1224
|
+
)
|
|
1225
|
+
|
|
1226
|
+
def __str__(self) -> str:
|
|
1227
|
+
return f"DiffusionType(gradientDirection={self.gradient_direction}, bvalue={self.bvalue})"
|
|
1228
|
+
|
|
1229
|
+
def __repr__(self) -> str:
|
|
1230
|
+
return f"DiffusionType(gradientDirection={repr(self.gradient_direction)}, bvalue={repr(self.bvalue)})"
|
|
1231
|
+
|
|
1232
|
+
|
|
1233
|
+
class SequenceParametersType:
|
|
1234
|
+
t_r: list[yardl.Float32]
|
|
1235
|
+
t_e: list[yardl.Float32]
|
|
1236
|
+
t_i: list[yardl.Float32]
|
|
1237
|
+
flip_angle_deg: list[yardl.Float32]
|
|
1238
|
+
sequence_type: typing.Optional[str]
|
|
1239
|
+
echo_spacing: list[yardl.Float32]
|
|
1240
|
+
diffusion_dimension: typing.Optional[DiffusionDimension]
|
|
1241
|
+
diffusion: list[DiffusionType]
|
|
1242
|
+
diffusion_scheme: typing.Optional[str]
|
|
1243
|
+
|
|
1244
|
+
def __init__(self, *,
|
|
1245
|
+
t_r: typing.Optional[list[yardl.Float32]] = None,
|
|
1246
|
+
t_e: typing.Optional[list[yardl.Float32]] = None,
|
|
1247
|
+
t_i: typing.Optional[list[yardl.Float32]] = None,
|
|
1248
|
+
flip_angle_deg: typing.Optional[list[yardl.Float32]] = None,
|
|
1249
|
+
sequence_type: typing.Optional[str] = None,
|
|
1250
|
+
echo_spacing: typing.Optional[list[yardl.Float32]] = None,
|
|
1251
|
+
diffusion_dimension: typing.Optional[DiffusionDimension] = None,
|
|
1252
|
+
diffusion: typing.Optional[list[DiffusionType]] = None,
|
|
1253
|
+
diffusion_scheme: typing.Optional[str] = None,
|
|
1254
|
+
):
|
|
1255
|
+
self.t_r = t_r if t_r is not None else []
|
|
1256
|
+
self.t_e = t_e if t_e is not None else []
|
|
1257
|
+
self.t_i = t_i if t_i is not None else []
|
|
1258
|
+
self.flip_angle_deg = flip_angle_deg if flip_angle_deg is not None else []
|
|
1259
|
+
self.sequence_type = sequence_type
|
|
1260
|
+
self.echo_spacing = echo_spacing if echo_spacing is not None else []
|
|
1261
|
+
self.diffusion_dimension = diffusion_dimension
|
|
1262
|
+
self.diffusion = diffusion if diffusion is not None else []
|
|
1263
|
+
self.diffusion_scheme = diffusion_scheme
|
|
1264
|
+
|
|
1265
|
+
def __eq__(self, other: object) -> bool:
|
|
1266
|
+
return (
|
|
1267
|
+
isinstance(other, SequenceParametersType)
|
|
1268
|
+
and self.t_r == other.t_r
|
|
1269
|
+
and self.t_e == other.t_e
|
|
1270
|
+
and self.t_i == other.t_i
|
|
1271
|
+
and self.flip_angle_deg == other.flip_angle_deg
|
|
1272
|
+
and self.sequence_type == other.sequence_type
|
|
1273
|
+
and self.echo_spacing == other.echo_spacing
|
|
1274
|
+
and self.diffusion_dimension == other.diffusion_dimension
|
|
1275
|
+
and self.diffusion == other.diffusion
|
|
1276
|
+
and self.diffusion_scheme == other.diffusion_scheme
|
|
1277
|
+
)
|
|
1278
|
+
|
|
1279
|
+
def __str__(self) -> str:
|
|
1280
|
+
return f"SequenceParametersType(tR={self.t_r}, tE={self.t_e}, tI={self.t_i}, flipAngleDeg={self.flip_angle_deg}, sequenceType={self.sequence_type}, echoSpacing={self.echo_spacing}, diffusionDimension={self.diffusion_dimension}, diffusion={self.diffusion}, diffusionScheme={self.diffusion_scheme})"
|
|
1281
|
+
|
|
1282
|
+
def __repr__(self) -> str:
|
|
1283
|
+
return f"SequenceParametersType(tR={repr(self.t_r)}, tE={repr(self.t_e)}, tI={repr(self.t_i)}, flipAngleDeg={repr(self.flip_angle_deg)}, sequenceType={repr(self.sequence_type)}, echoSpacing={repr(self.echo_spacing)}, diffusionDimension={repr(self.diffusion_dimension)}, diffusion={repr(self.diffusion)}, diffusionScheme={repr(self.diffusion_scheme)})"
|
|
1284
|
+
|
|
1285
|
+
|
|
1286
|
+
class UserParameterBase64Type:
|
|
1287
|
+
name: str
|
|
1288
|
+
value: str
|
|
1289
|
+
|
|
1290
|
+
def __init__(self, *,
|
|
1291
|
+
name: str = "",
|
|
1292
|
+
value: str = "",
|
|
1293
|
+
):
|
|
1294
|
+
self.name = name
|
|
1295
|
+
self.value = value
|
|
1296
|
+
|
|
1297
|
+
def __eq__(self, other: object) -> bool:
|
|
1298
|
+
return (
|
|
1299
|
+
isinstance(other, UserParameterBase64Type)
|
|
1300
|
+
and self.name == other.name
|
|
1301
|
+
and self.value == other.value
|
|
1302
|
+
)
|
|
1303
|
+
|
|
1304
|
+
def __str__(self) -> str:
|
|
1305
|
+
return f"UserParameterBase64Type(name={self.name}, value={self.value})"
|
|
1306
|
+
|
|
1307
|
+
def __repr__(self) -> str:
|
|
1308
|
+
return f"UserParameterBase64Type(name={repr(self.name)}, value={repr(self.value)})"
|
|
1309
|
+
|
|
1310
|
+
|
|
1311
|
+
class UserParametersType:
|
|
1312
|
+
user_parameter_long: list[UserParameterLongType]
|
|
1313
|
+
user_parameter_double: list[UserParameterDoubleType]
|
|
1314
|
+
user_parameter_string: list[UserParameterStringType]
|
|
1315
|
+
user_parameter_base64: list[UserParameterBase64Type]
|
|
1316
|
+
|
|
1317
|
+
def __init__(self, *,
|
|
1318
|
+
user_parameter_long: typing.Optional[list[UserParameterLongType]] = None,
|
|
1319
|
+
user_parameter_double: typing.Optional[list[UserParameterDoubleType]] = None,
|
|
1320
|
+
user_parameter_string: typing.Optional[list[UserParameterStringType]] = None,
|
|
1321
|
+
user_parameter_base64: typing.Optional[list[UserParameterBase64Type]] = None,
|
|
1322
|
+
):
|
|
1323
|
+
self.user_parameter_long = user_parameter_long if user_parameter_long is not None else []
|
|
1324
|
+
self.user_parameter_double = user_parameter_double if user_parameter_double is not None else []
|
|
1325
|
+
self.user_parameter_string = user_parameter_string if user_parameter_string is not None else []
|
|
1326
|
+
self.user_parameter_base64 = user_parameter_base64 if user_parameter_base64 is not None else []
|
|
1327
|
+
|
|
1328
|
+
def __eq__(self, other: object) -> bool:
|
|
1329
|
+
return (
|
|
1330
|
+
isinstance(other, UserParametersType)
|
|
1331
|
+
and self.user_parameter_long == other.user_parameter_long
|
|
1332
|
+
and self.user_parameter_double == other.user_parameter_double
|
|
1333
|
+
and self.user_parameter_string == other.user_parameter_string
|
|
1334
|
+
and self.user_parameter_base64 == other.user_parameter_base64
|
|
1335
|
+
)
|
|
1336
|
+
|
|
1337
|
+
def __str__(self) -> str:
|
|
1338
|
+
return f"UserParametersType(userParameterLong={self.user_parameter_long}, userParameterDouble={self.user_parameter_double}, userParameterString={self.user_parameter_string}, userParameterBase64={self.user_parameter_base64})"
|
|
1339
|
+
|
|
1340
|
+
def __repr__(self) -> str:
|
|
1341
|
+
return f"UserParametersType(userParameterLong={repr(self.user_parameter_long)}, userParameterDouble={repr(self.user_parameter_double)}, userParameterString={repr(self.user_parameter_string)}, userParameterBase64={repr(self.user_parameter_base64)})"
|
|
1342
|
+
|
|
1343
|
+
|
|
1344
|
+
class WaveformType(yardl.OutOfRangeEnum):
|
|
1345
|
+
ECG = 0
|
|
1346
|
+
PULSE = 1
|
|
1347
|
+
RESPIRATORY = 2
|
|
1348
|
+
TRIGGER = 3
|
|
1349
|
+
GRADIENTWAVEFORM = 4
|
|
1350
|
+
OTHER = 5
|
|
1351
|
+
|
|
1352
|
+
class WaveformInformationType:
|
|
1353
|
+
waveform_name: str
|
|
1354
|
+
waveform_type: WaveformType
|
|
1355
|
+
user_parameters: UserParametersType
|
|
1356
|
+
|
|
1357
|
+
def __init__(self, *,
|
|
1358
|
+
waveform_name: str = "",
|
|
1359
|
+
waveform_type: WaveformType = WaveformType.ECG,
|
|
1360
|
+
user_parameters: typing.Optional[UserParametersType] = None,
|
|
1361
|
+
):
|
|
1362
|
+
self.waveform_name = waveform_name
|
|
1363
|
+
self.waveform_type = waveform_type
|
|
1364
|
+
self.user_parameters = user_parameters if user_parameters is not None else UserParametersType()
|
|
1365
|
+
|
|
1366
|
+
def __eq__(self, other: object) -> bool:
|
|
1367
|
+
return (
|
|
1368
|
+
isinstance(other, WaveformInformationType)
|
|
1369
|
+
and self.waveform_name == other.waveform_name
|
|
1370
|
+
and self.waveform_type == other.waveform_type
|
|
1371
|
+
and self.user_parameters == other.user_parameters
|
|
1372
|
+
)
|
|
1373
|
+
|
|
1374
|
+
def __str__(self) -> str:
|
|
1375
|
+
return f"WaveformInformationType(waveformName={self.waveform_name}, waveformType={self.waveform_type}, userParameters={self.user_parameters})"
|
|
1376
|
+
|
|
1377
|
+
def __repr__(self) -> str:
|
|
1378
|
+
return f"WaveformInformationType(waveformName={repr(self.waveform_name)}, waveformType={repr(self.waveform_type)}, userParameters={repr(self.user_parameters)})"
|
|
1379
|
+
|
|
1380
|
+
|
|
1381
|
+
class Header:
|
|
1382
|
+
version: typing.Optional[yardl.Int64]
|
|
1383
|
+
subject_information: typing.Optional[SubjectInformationType]
|
|
1384
|
+
study_information: typing.Optional[StudyInformationType]
|
|
1385
|
+
measurement_information: typing.Optional[MeasurementInformationType]
|
|
1386
|
+
acquisition_system_information: typing.Optional[AcquisitionSystemInformationType]
|
|
1387
|
+
experimental_conditions: ExperimentalConditionsType
|
|
1388
|
+
encoding: list[EncodingType]
|
|
1389
|
+
sequence_parameters: typing.Optional[SequenceParametersType]
|
|
1390
|
+
user_parameters: typing.Optional[UserParametersType]
|
|
1391
|
+
waveform_information: list[WaveformInformationType]
|
|
1392
|
+
|
|
1393
|
+
def __init__(self, *,
|
|
1394
|
+
version: typing.Optional[yardl.Int64] = None,
|
|
1395
|
+
subject_information: typing.Optional[SubjectInformationType] = None,
|
|
1396
|
+
study_information: typing.Optional[StudyInformationType] = None,
|
|
1397
|
+
measurement_information: typing.Optional[MeasurementInformationType] = None,
|
|
1398
|
+
acquisition_system_information: typing.Optional[AcquisitionSystemInformationType] = None,
|
|
1399
|
+
experimental_conditions: typing.Optional[ExperimentalConditionsType] = None,
|
|
1400
|
+
encoding: typing.Optional[list[EncodingType]] = None,
|
|
1401
|
+
sequence_parameters: typing.Optional[SequenceParametersType] = None,
|
|
1402
|
+
user_parameters: typing.Optional[UserParametersType] = None,
|
|
1403
|
+
waveform_information: typing.Optional[list[WaveformInformationType]] = None,
|
|
1404
|
+
):
|
|
1405
|
+
self.version = version
|
|
1406
|
+
self.subject_information = subject_information
|
|
1407
|
+
self.study_information = study_information
|
|
1408
|
+
self.measurement_information = measurement_information
|
|
1409
|
+
self.acquisition_system_information = acquisition_system_information
|
|
1410
|
+
self.experimental_conditions = experimental_conditions if experimental_conditions is not None else ExperimentalConditionsType()
|
|
1411
|
+
self.encoding = encoding if encoding is not None else []
|
|
1412
|
+
self.sequence_parameters = sequence_parameters
|
|
1413
|
+
self.user_parameters = user_parameters
|
|
1414
|
+
self.waveform_information = waveform_information if waveform_information is not None else []
|
|
1415
|
+
|
|
1416
|
+
def __eq__(self, other: object) -> bool:
|
|
1417
|
+
return (
|
|
1418
|
+
isinstance(other, Header)
|
|
1419
|
+
and self.version == other.version
|
|
1420
|
+
and self.subject_information == other.subject_information
|
|
1421
|
+
and self.study_information == other.study_information
|
|
1422
|
+
and self.measurement_information == other.measurement_information
|
|
1423
|
+
and self.acquisition_system_information == other.acquisition_system_information
|
|
1424
|
+
and self.experimental_conditions == other.experimental_conditions
|
|
1425
|
+
and self.encoding == other.encoding
|
|
1426
|
+
and self.sequence_parameters == other.sequence_parameters
|
|
1427
|
+
and self.user_parameters == other.user_parameters
|
|
1428
|
+
and self.waveform_information == other.waveform_information
|
|
1429
|
+
)
|
|
1430
|
+
|
|
1431
|
+
def __str__(self) -> str:
|
|
1432
|
+
return f"Header(version={self.version}, subjectInformation={self.subject_information}, studyInformation={self.study_information}, measurementInformation={self.measurement_information}, acquisitionSystemInformation={self.acquisition_system_information}, experimentalConditions={self.experimental_conditions}, encoding={self.encoding}, sequenceParameters={self.sequence_parameters}, userParameters={self.user_parameters}, waveformInformation={self.waveform_information})"
|
|
1433
|
+
|
|
1434
|
+
def __repr__(self) -> str:
|
|
1435
|
+
return f"Header(version={repr(self.version)}, subjectInformation={repr(self.subject_information)}, studyInformation={repr(self.study_information)}, measurementInformation={repr(self.measurement_information)}, acquisitionSystemInformation={repr(self.acquisition_system_information)}, experimentalConditions={repr(self.experimental_conditions)}, encoding={repr(self.encoding)}, sequenceParameters={repr(self.sequence_parameters)}, userParameters={repr(self.user_parameters)}, waveformInformation={repr(self.waveform_information)})"
|
|
1436
|
+
|
|
1437
|
+
|
|
1438
|
+
class ImageFlags(enum.IntFlag):
|
|
1439
|
+
IS_NAVIGATION_DATA = 1
|
|
1440
|
+
FIRST_IN_AVERAGE = 16
|
|
1441
|
+
LAST_IN_AVERAGE = 32
|
|
1442
|
+
FIRST_IN_SLICE = 64
|
|
1443
|
+
LAST_IN_SLICE = 128
|
|
1444
|
+
FIRST_IN_CONTRAST = 256
|
|
1445
|
+
LAST_IN_CONTRAST = 512
|
|
1446
|
+
FIRST_IN_PHASE = 1024
|
|
1447
|
+
LAST_IN_PHASE = 2048
|
|
1448
|
+
FIRST_IN_REPETITION = 4096
|
|
1449
|
+
LAST_IN_REPETITION = 8192
|
|
1450
|
+
FIRST_IN_SET = 16384
|
|
1451
|
+
LAST_IN_SET = 32768
|
|
1452
|
+
|
|
1453
|
+
def __eq__(self, other: object) -> bool:
|
|
1454
|
+
return isinstance(other, ImageFlags) and self.value == other.value
|
|
1455
|
+
|
|
1456
|
+
def __hash__(self) -> int:
|
|
1457
|
+
return hash(self.value)
|
|
1458
|
+
|
|
1459
|
+
__str__ = enum.Flag.__str__ # type: ignore
|
|
1460
|
+
|
|
1461
|
+
class ImageType(yardl.OutOfRangeEnum):
|
|
1462
|
+
MAGNITUDE = 1
|
|
1463
|
+
PHASE = 2
|
|
1464
|
+
REAL = 3
|
|
1465
|
+
IMAG = 4
|
|
1466
|
+
COMPLEX = 5
|
|
1467
|
+
|
|
1468
|
+
ImageData = npt.NDArray[Y_NP]
|
|
1469
|
+
|
|
1470
|
+
class ImageMetaData:
|
|
1471
|
+
name: str
|
|
1472
|
+
value: str
|
|
1473
|
+
|
|
1474
|
+
def __init__(self, *,
|
|
1475
|
+
name: str = "",
|
|
1476
|
+
value: str = "",
|
|
1477
|
+
):
|
|
1478
|
+
self.name = name
|
|
1479
|
+
self.value = value
|
|
1480
|
+
|
|
1481
|
+
def __eq__(self, other: object) -> bool:
|
|
1482
|
+
return (
|
|
1483
|
+
isinstance(other, ImageMetaData)
|
|
1484
|
+
and self.name == other.name
|
|
1485
|
+
and self.value == other.value
|
|
1486
|
+
)
|
|
1487
|
+
|
|
1488
|
+
def __str__(self) -> str:
|
|
1489
|
+
return f"ImageMetaData(name={self.name}, value={self.value})"
|
|
1490
|
+
|
|
1491
|
+
def __repr__(self) -> str:
|
|
1492
|
+
return f"ImageMetaData(name={repr(self.name)}, value={repr(self.value)})"
|
|
1493
|
+
|
|
1494
|
+
|
|
1495
|
+
class Image(typing.Generic[T_NP]):
|
|
1496
|
+
flags: ImageFlags
|
|
1497
|
+
"""A bit mask of common attributes applicable to individual images"""
|
|
1498
|
+
|
|
1499
|
+
measurement_uid: yardl.UInt32
|
|
1500
|
+
"""Unique ID corresponding to the image"""
|
|
1501
|
+
|
|
1502
|
+
field_of_view: npt.NDArray[np.float32]
|
|
1503
|
+
"""Physical size (in mm) in each of the 3 dimensions in the image"""
|
|
1504
|
+
|
|
1505
|
+
position: npt.NDArray[np.float32]
|
|
1506
|
+
"""Center of the excited volume, in LPS coordinates relative to isocenter in millimeters"""
|
|
1507
|
+
|
|
1508
|
+
col_dir: npt.NDArray[np.float32]
|
|
1509
|
+
"""Directional cosine of readout/frequency encoding"""
|
|
1510
|
+
|
|
1511
|
+
line_dir: npt.NDArray[np.float32]
|
|
1512
|
+
"""Directional cosine of phase encoding (2D)"""
|
|
1513
|
+
|
|
1514
|
+
slice_dir: npt.NDArray[np.float32]
|
|
1515
|
+
"""Directional cosine of 3D phase encoding direction"""
|
|
1516
|
+
|
|
1517
|
+
patient_table_position: npt.NDArray[np.float32]
|
|
1518
|
+
"""Offset position of the patient table, in LPS coordinates"""
|
|
1519
|
+
|
|
1520
|
+
average: typing.Optional[yardl.UInt32]
|
|
1521
|
+
"""Signal average"""
|
|
1522
|
+
|
|
1523
|
+
slice: typing.Optional[yardl.UInt32]
|
|
1524
|
+
"""Slice number (multi-slice 2D)"""
|
|
1525
|
+
|
|
1526
|
+
contrast: typing.Optional[yardl.UInt32]
|
|
1527
|
+
"""Echo number in multi-echo"""
|
|
1528
|
+
|
|
1529
|
+
phase: typing.Optional[yardl.UInt32]
|
|
1530
|
+
"""Cardiac phase"""
|
|
1531
|
+
|
|
1532
|
+
repetition: typing.Optional[yardl.UInt32]
|
|
1533
|
+
"""Counter in repeated/dynamic acquisitions"""
|
|
1534
|
+
|
|
1535
|
+
set: typing.Optional[yardl.UInt32]
|
|
1536
|
+
"""Sets of different preparation, e.g. flow encoding, diffusion weighting"""
|
|
1537
|
+
|
|
1538
|
+
acquisition_time_stamp: typing.Optional[yardl.UInt32]
|
|
1539
|
+
"""Clock time stamp (e.g. milliseconds since midnight)"""
|
|
1540
|
+
|
|
1541
|
+
physiology_time_stamp: list[yardl.UInt32]
|
|
1542
|
+
"""Time stamps relative to physiological triggering, e.g. ECG, pulse oximetry, respiratory"""
|
|
1543
|
+
|
|
1544
|
+
image_type: ImageType
|
|
1545
|
+
"""Interpretation type of the image"""
|
|
1546
|
+
|
|
1547
|
+
image_index: typing.Optional[yardl.UInt32]
|
|
1548
|
+
"""Image index number within a series of images, corresponding to DICOM InstanceNumber (0020,0013)"""
|
|
1549
|
+
|
|
1550
|
+
image_series_index: typing.Optional[yardl.UInt32]
|
|
1551
|
+
"""Series index, used to separate images into different series, corresponding to DICOM SeriesNumber (0020,0011)"""
|
|
1552
|
+
|
|
1553
|
+
user_int: list[yardl.Int32]
|
|
1554
|
+
"""User-defined int parameters"""
|
|
1555
|
+
|
|
1556
|
+
user_float: list[yardl.Float32]
|
|
1557
|
+
"""User-defined float parameters"""
|
|
1558
|
+
|
|
1559
|
+
data: ImageData[T_NP]
|
|
1560
|
+
"""Image data array"""
|
|
1561
|
+
|
|
1562
|
+
meta: dict[str, list[str]]
|
|
1563
|
+
"""Meta attributes"""
|
|
1564
|
+
|
|
1565
|
+
|
|
1566
|
+
def __init__(self, *,
|
|
1567
|
+
flags: ImageFlags = ImageFlags(0),
|
|
1568
|
+
measurement_uid: yardl.UInt32 = 0,
|
|
1569
|
+
field_of_view: typing.Optional[npt.NDArray[np.float32]] = None,
|
|
1570
|
+
position: typing.Optional[npt.NDArray[np.float32]] = None,
|
|
1571
|
+
col_dir: typing.Optional[npt.NDArray[np.float32]] = None,
|
|
1572
|
+
line_dir: typing.Optional[npt.NDArray[np.float32]] = None,
|
|
1573
|
+
slice_dir: typing.Optional[npt.NDArray[np.float32]] = None,
|
|
1574
|
+
patient_table_position: typing.Optional[npt.NDArray[np.float32]] = None,
|
|
1575
|
+
average: typing.Optional[yardl.UInt32] = None,
|
|
1576
|
+
slice: typing.Optional[yardl.UInt32] = None,
|
|
1577
|
+
contrast: typing.Optional[yardl.UInt32] = None,
|
|
1578
|
+
phase: typing.Optional[yardl.UInt32] = None,
|
|
1579
|
+
repetition: typing.Optional[yardl.UInt32] = None,
|
|
1580
|
+
set: typing.Optional[yardl.UInt32] = None,
|
|
1581
|
+
acquisition_time_stamp: typing.Optional[yardl.UInt32] = None,
|
|
1582
|
+
physiology_time_stamp: typing.Optional[list[yardl.UInt32]] = None,
|
|
1583
|
+
image_type: ImageType,
|
|
1584
|
+
image_index: typing.Optional[yardl.UInt32] = None,
|
|
1585
|
+
image_series_index: typing.Optional[yardl.UInt32] = None,
|
|
1586
|
+
user_int: typing.Optional[list[yardl.Int32]] = None,
|
|
1587
|
+
user_float: typing.Optional[list[yardl.Float32]] = None,
|
|
1588
|
+
data: ImageData[T_NP],
|
|
1589
|
+
meta: typing.Optional[dict[str, list[str]]] = None,
|
|
1590
|
+
):
|
|
1591
|
+
self.flags = flags
|
|
1592
|
+
self.measurement_uid = measurement_uid
|
|
1593
|
+
self.field_of_view = field_of_view if field_of_view is not None else np.zeros((3,), dtype=np.dtype(np.float32))
|
|
1594
|
+
self.position = position if position is not None else np.zeros((3,), dtype=np.dtype(np.float32))
|
|
1595
|
+
self.col_dir = col_dir if col_dir is not None else np.zeros((3,), dtype=np.dtype(np.float32))
|
|
1596
|
+
self.line_dir = line_dir if line_dir is not None else np.zeros((3,), dtype=np.dtype(np.float32))
|
|
1597
|
+
self.slice_dir = slice_dir if slice_dir is not None else np.zeros((3,), dtype=np.dtype(np.float32))
|
|
1598
|
+
self.patient_table_position = patient_table_position if patient_table_position is not None else np.zeros((3,), dtype=np.dtype(np.float32))
|
|
1599
|
+
self.average = average
|
|
1600
|
+
self.slice = slice
|
|
1601
|
+
self.contrast = contrast
|
|
1602
|
+
self.phase = phase
|
|
1603
|
+
self.repetition = repetition
|
|
1604
|
+
self.set = set
|
|
1605
|
+
self.acquisition_time_stamp = acquisition_time_stamp
|
|
1606
|
+
self.physiology_time_stamp = physiology_time_stamp if physiology_time_stamp is not None else []
|
|
1607
|
+
self.image_type = image_type
|
|
1608
|
+
self.image_index = image_index
|
|
1609
|
+
self.image_series_index = image_series_index
|
|
1610
|
+
self.user_int = user_int if user_int is not None else []
|
|
1611
|
+
self.user_float = user_float if user_float is not None else []
|
|
1612
|
+
self.data = data
|
|
1613
|
+
self.meta = meta if meta is not None else {}
|
|
1614
|
+
|
|
1615
|
+
def channels(self) -> yardl.Size:
|
|
1616
|
+
return self.data.shape[0]
|
|
1617
|
+
|
|
1618
|
+
def slices(self) -> yardl.Size:
|
|
1619
|
+
return self.data.shape[1]
|
|
1620
|
+
|
|
1621
|
+
def rows(self) -> yardl.Size:
|
|
1622
|
+
return self.data.shape[2]
|
|
1623
|
+
|
|
1624
|
+
def cols(self) -> yardl.Size:
|
|
1625
|
+
return self.data.shape[3]
|
|
1626
|
+
|
|
1627
|
+
def __eq__(self, other: object) -> bool:
|
|
1628
|
+
return (
|
|
1629
|
+
isinstance(other, Image)
|
|
1630
|
+
and self.flags == other.flags
|
|
1631
|
+
and self.measurement_uid == other.measurement_uid
|
|
1632
|
+
and yardl.structural_equal(self.field_of_view, other.field_of_view)
|
|
1633
|
+
and yardl.structural_equal(self.position, other.position)
|
|
1634
|
+
and yardl.structural_equal(self.col_dir, other.col_dir)
|
|
1635
|
+
and yardl.structural_equal(self.line_dir, other.line_dir)
|
|
1636
|
+
and yardl.structural_equal(self.slice_dir, other.slice_dir)
|
|
1637
|
+
and yardl.structural_equal(self.patient_table_position, other.patient_table_position)
|
|
1638
|
+
and self.average == other.average
|
|
1639
|
+
and self.slice == other.slice
|
|
1640
|
+
and self.contrast == other.contrast
|
|
1641
|
+
and self.phase == other.phase
|
|
1642
|
+
and self.repetition == other.repetition
|
|
1643
|
+
and self.set == other.set
|
|
1644
|
+
and self.acquisition_time_stamp == other.acquisition_time_stamp
|
|
1645
|
+
and self.physiology_time_stamp == other.physiology_time_stamp
|
|
1646
|
+
and self.image_type == other.image_type
|
|
1647
|
+
and self.image_index == other.image_index
|
|
1648
|
+
and self.image_series_index == other.image_series_index
|
|
1649
|
+
and self.user_int == other.user_int
|
|
1650
|
+
and self.user_float == other.user_float
|
|
1651
|
+
and yardl.structural_equal(self.data, other.data)
|
|
1652
|
+
and self.meta == other.meta
|
|
1653
|
+
)
|
|
1654
|
+
|
|
1655
|
+
def __str__(self) -> str:
|
|
1656
|
+
return f"Image(flags={self.flags}, measurementUid={self.measurement_uid}, fieldOfView={self.field_of_view}, position={self.position}, colDir={self.col_dir}, lineDir={self.line_dir}, sliceDir={self.slice_dir}, patientTablePosition={self.patient_table_position}, average={self.average}, slice={self.slice}, contrast={self.contrast}, phase={self.phase}, repetition={self.repetition}, set={self.set}, acquisitionTimeStamp={self.acquisition_time_stamp}, physiologyTimeStamp={self.physiology_time_stamp}, imageType={self.image_type}, imageIndex={self.image_index}, imageSeriesIndex={self.image_series_index}, userInt={self.user_int}, userFloat={self.user_float}, data={self.data}, meta={self.meta})"
|
|
1657
|
+
|
|
1658
|
+
def __repr__(self) -> str:
|
|
1659
|
+
return f"Image(flags={repr(self.flags)}, measurementUid={repr(self.measurement_uid)}, fieldOfView={repr(self.field_of_view)}, position={repr(self.position)}, colDir={repr(self.col_dir)}, lineDir={repr(self.line_dir)}, sliceDir={repr(self.slice_dir)}, patientTablePosition={repr(self.patient_table_position)}, average={repr(self.average)}, slice={repr(self.slice)}, contrast={repr(self.contrast)}, phase={repr(self.phase)}, repetition={repr(self.repetition)}, set={repr(self.set)}, acquisitionTimeStamp={repr(self.acquisition_time_stamp)}, physiologyTimeStamp={repr(self.physiology_time_stamp)}, imageType={repr(self.image_type)}, imageIndex={repr(self.image_index)}, imageSeriesIndex={repr(self.image_series_index)}, userInt={repr(self.user_int)}, userFloat={repr(self.user_float)}, data={repr(self.data)}, meta={repr(self.meta)})"
|
|
1660
|
+
|
|
1661
|
+
|
|
1662
|
+
WaveformSamples = npt.NDArray[T_NP]
|
|
1663
|
+
|
|
1664
|
+
class Waveform(typing.Generic[T_NP]):
|
|
1665
|
+
flags: yardl.UInt64
|
|
1666
|
+
"""Bit field of flags. Currently unused"""
|
|
1667
|
+
|
|
1668
|
+
measurement_uid: yardl.UInt32
|
|
1669
|
+
"""Unique ID for this measurement"""
|
|
1670
|
+
|
|
1671
|
+
scan_counter: yardl.UInt32
|
|
1672
|
+
"""Number of the acquisition after this waveform"""
|
|
1673
|
+
|
|
1674
|
+
time_stamp: yardl.UInt32
|
|
1675
|
+
"""Starting timestamp of this waveform"""
|
|
1676
|
+
|
|
1677
|
+
sample_time_us: yardl.Float32
|
|
1678
|
+
"""Time between samples in microseconds"""
|
|
1679
|
+
|
|
1680
|
+
waveform_id: yardl.UInt32
|
|
1681
|
+
"""ID matching the waveform in the MRD header"""
|
|
1682
|
+
|
|
1683
|
+
data: WaveformSamples[T_NP]
|
|
1684
|
+
"""Waveform sample array"""
|
|
1685
|
+
|
|
1686
|
+
|
|
1687
|
+
def __init__(self, *,
|
|
1688
|
+
flags: yardl.UInt64 = 0,
|
|
1689
|
+
measurement_uid: yardl.UInt32 = 0,
|
|
1690
|
+
scan_counter: yardl.UInt32 = 0,
|
|
1691
|
+
time_stamp: yardl.UInt32 = 0,
|
|
1692
|
+
sample_time_us: yardl.Float32 = 0.0,
|
|
1693
|
+
waveform_id: yardl.UInt32 = 0,
|
|
1694
|
+
data: WaveformSamples[T_NP],
|
|
1695
|
+
):
|
|
1696
|
+
self.flags = flags
|
|
1697
|
+
self.measurement_uid = measurement_uid
|
|
1698
|
+
self.scan_counter = scan_counter
|
|
1699
|
+
self.time_stamp = time_stamp
|
|
1700
|
+
self.sample_time_us = sample_time_us
|
|
1701
|
+
self.waveform_id = waveform_id
|
|
1702
|
+
self.data = data
|
|
1703
|
+
|
|
1704
|
+
def channels(self) -> yardl.Size:
|
|
1705
|
+
return self.data.shape[0]
|
|
1706
|
+
|
|
1707
|
+
def number_of_samples(self) -> yardl.Size:
|
|
1708
|
+
return self.data.shape[1]
|
|
1709
|
+
|
|
1710
|
+
def __eq__(self, other: object) -> bool:
|
|
1711
|
+
return (
|
|
1712
|
+
isinstance(other, Waveform)
|
|
1713
|
+
and self.flags == other.flags
|
|
1714
|
+
and self.measurement_uid == other.measurement_uid
|
|
1715
|
+
and self.scan_counter == other.scan_counter
|
|
1716
|
+
and self.time_stamp == other.time_stamp
|
|
1717
|
+
and self.sample_time_us == other.sample_time_us
|
|
1718
|
+
and self.waveform_id == other.waveform_id
|
|
1719
|
+
and yardl.structural_equal(self.data, other.data)
|
|
1720
|
+
)
|
|
1721
|
+
|
|
1722
|
+
def __str__(self) -> str:
|
|
1723
|
+
return f"Waveform(flags={self.flags}, measurementUid={self.measurement_uid}, scanCounter={self.scan_counter}, timeStamp={self.time_stamp}, sampleTimeUs={self.sample_time_us}, waveformId={self.waveform_id}, data={self.data})"
|
|
1724
|
+
|
|
1725
|
+
def __repr__(self) -> str:
|
|
1726
|
+
return f"Waveform(flags={repr(self.flags)}, measurementUid={repr(self.measurement_uid)}, scanCounter={repr(self.scan_counter)}, timeStamp={repr(self.time_stamp)}, sampleTimeUs={repr(self.sample_time_us)}, waveformId={repr(self.waveform_id)}, data={repr(self.data)})"
|
|
1727
|
+
|
|
1728
|
+
|
|
1729
|
+
WaveformUint32 = Waveform[np.uint32]
|
|
1730
|
+
|
|
1731
|
+
ImageUint16 = Image[np.uint16]
|
|
1732
|
+
|
|
1733
|
+
ImageInt16 = Image[np.int16]
|
|
1734
|
+
|
|
1735
|
+
ImageUint = Image[np.uint32]
|
|
1736
|
+
|
|
1737
|
+
ImageInt = Image[np.int32]
|
|
1738
|
+
|
|
1739
|
+
ImageFloat = Image[np.float32]
|
|
1740
|
+
|
|
1741
|
+
ImageDouble = Image[np.float64]
|
|
1742
|
+
|
|
1743
|
+
ImageComplexFloat = Image[np.complex64]
|
|
1744
|
+
|
|
1745
|
+
ImageComplexDouble = Image[np.complex128]
|
|
1746
|
+
|
|
1747
|
+
_T = typing.TypeVar('_T')
|
|
1748
|
+
|
|
1749
|
+
class StreamItem:
|
|
1750
|
+
Acquisition: typing.ClassVar[type["StreamItemUnionCase[Acquisition]"]]
|
|
1751
|
+
WaveformUint32: typing.ClassVar[type["StreamItemUnionCase[WaveformUint32]"]]
|
|
1752
|
+
ImageUint16: typing.ClassVar[type["StreamItemUnionCase[ImageUint16]"]]
|
|
1753
|
+
ImageInt16: typing.ClassVar[type["StreamItemUnionCase[ImageInt16]"]]
|
|
1754
|
+
ImageUint: typing.ClassVar[type["StreamItemUnionCase[ImageUint]"]]
|
|
1755
|
+
ImageInt: typing.ClassVar[type["StreamItemUnionCase[ImageInt]"]]
|
|
1756
|
+
ImageFloat: typing.ClassVar[type["StreamItemUnionCase[ImageFloat]"]]
|
|
1757
|
+
ImageDouble: typing.ClassVar[type["StreamItemUnionCase[ImageDouble]"]]
|
|
1758
|
+
ImageComplexFloat: typing.ClassVar[type["StreamItemUnionCase[ImageComplexFloat]"]]
|
|
1759
|
+
ImageComplexDouble: typing.ClassVar[type["StreamItemUnionCase[ImageComplexDouble]"]]
|
|
1760
|
+
|
|
1761
|
+
class StreamItemUnionCase(StreamItem, yardl.UnionCase[_T]):
|
|
1762
|
+
pass
|
|
1763
|
+
|
|
1764
|
+
StreamItem.Acquisition = type("StreamItem.Acquisition", (StreamItemUnionCase,), {"index": 0, "tag": "Acquisition"})
|
|
1765
|
+
StreamItem.WaveformUint32 = type("StreamItem.WaveformUint32", (StreamItemUnionCase,), {"index": 1, "tag": "WaveformUint32"})
|
|
1766
|
+
StreamItem.ImageUint16 = type("StreamItem.ImageUint16", (StreamItemUnionCase,), {"index": 2, "tag": "ImageUint16"})
|
|
1767
|
+
StreamItem.ImageInt16 = type("StreamItem.ImageInt16", (StreamItemUnionCase,), {"index": 3, "tag": "ImageInt16"})
|
|
1768
|
+
StreamItem.ImageUint = type("StreamItem.ImageUint", (StreamItemUnionCase,), {"index": 4, "tag": "ImageUint"})
|
|
1769
|
+
StreamItem.ImageInt = type("StreamItem.ImageInt", (StreamItemUnionCase,), {"index": 5, "tag": "ImageInt"})
|
|
1770
|
+
StreamItem.ImageFloat = type("StreamItem.ImageFloat", (StreamItemUnionCase,), {"index": 6, "tag": "ImageFloat"})
|
|
1771
|
+
StreamItem.ImageDouble = type("StreamItem.ImageDouble", (StreamItemUnionCase,), {"index": 7, "tag": "ImageDouble"})
|
|
1772
|
+
StreamItem.ImageComplexFloat = type("StreamItem.ImageComplexFloat", (StreamItemUnionCase,), {"index": 8, "tag": "ImageComplexFloat"})
|
|
1773
|
+
StreamItem.ImageComplexDouble = type("StreamItem.ImageComplexDouble", (StreamItemUnionCase,), {"index": 9, "tag": "ImageComplexDouble"})
|
|
1774
|
+
del StreamItemUnionCase
|
|
1775
|
+
|
|
1776
|
+
def _mk_get_dtype():
|
|
1777
|
+
dtype_map: dict[typing.Union[type, types.GenericAlias], typing.Union[np.dtype[typing.Any], typing.Callable[[tuple[type, ...]], np.dtype[typing.Any]]]] = {}
|
|
1778
|
+
get_dtype = _dtypes.make_get_dtype_func(dtype_map)
|
|
1779
|
+
|
|
1780
|
+
dtype_map.setdefault(AcquisitionFlags, np.dtype(np.uint64))
|
|
1781
|
+
dtype_map.setdefault(EncodingCounters, np.dtype([('kspace_encode_step_1', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('kspace_encode_step_2', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('average', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('slice', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('contrast', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('phase', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('repetition', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('set', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('segment', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('user', np.dtype(np.object_))], align=True))
|
|
1782
|
+
dtype_map.setdefault(Acquisition, np.dtype([('flags', get_dtype(AcquisitionFlags)), ('idx', get_dtype(EncodingCounters)), ('measurement_uid', np.dtype(np.uint32)), ('scan_counter', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('acquisition_time_stamp', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('physiology_time_stamp', np.dtype(np.object_)), ('channel_order', np.dtype(np.object_)), ('discard_pre', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('discard_post', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('center_sample', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('encoding_space_ref', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('sample_time_us', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.float32))], align=True)), ('position', np.dtype(np.float32), (3,)), ('read_dir', np.dtype(np.float32), (3,)), ('phase_dir', np.dtype(np.float32), (3,)), ('slice_dir', np.dtype(np.float32), (3,)), ('patient_table_position', np.dtype(np.float32), (3,)), ('user_int', np.dtype(np.object_)), ('user_float', np.dtype(np.object_)), ('data', np.dtype(np.object_)), ('trajectory', np.dtype(np.object_))], align=True))
|
|
1783
|
+
dtype_map.setdefault(PatientGender, np.dtype(np.int32))
|
|
1784
|
+
dtype_map.setdefault(SubjectInformationType, np.dtype([('patient_name', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('patient_weight_kg', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.float32))], align=True)), ('patient_height_m', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.float32))], align=True)), ('patient_id', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('patient_birthdate', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.datetime64))], align=True)), ('patient_gender', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(PatientGender))], align=True))], align=True))
|
|
1785
|
+
dtype_map.setdefault(StudyInformationType, np.dtype([('study_date', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.datetime64))], align=True)), ('study_time', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.timedelta64))], align=True)), ('study_id', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('accession_number', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.int64))], align=True)), ('referring_physician_name', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('study_description', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('study_instance_uid', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('body_part_examined', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True))], align=True))
|
|
1786
|
+
dtype_map.setdefault(PatientPosition, np.dtype(np.int32))
|
|
1787
|
+
dtype_map.setdefault(ThreeDimensionalFloat, np.dtype([('x', np.dtype(np.float32)), ('y', np.dtype(np.float32)), ('z', np.dtype(np.float32))], align=True))
|
|
1788
|
+
dtype_map.setdefault(MeasurementDependencyType, np.dtype([('dependency_type', np.dtype(np.object_)), ('measurement_id', np.dtype(np.object_))], align=True))
|
|
1789
|
+
dtype_map.setdefault(ReferencedImageSequenceType, np.dtype([('referenced_sop_instance_uid', np.dtype(np.object_))], align=True))
|
|
1790
|
+
dtype_map.setdefault(MeasurementInformationType, np.dtype([('measurement_id', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('series_date', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.datetime64))], align=True)), ('series_time', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.timedelta64))], align=True)), ('patient_position', get_dtype(PatientPosition)), ('relative_table_position', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(ThreeDimensionalFloat))], align=True)), ('initial_series_number', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.int64))], align=True)), ('protocol_name', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('sequence_name', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('series_description', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('measurement_dependency', np.dtype(np.object_)), ('series_instance_uid_root', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('frame_of_reference_uid', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('referenced_image_sequence', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(ReferencedImageSequenceType))], align=True))], align=True))
|
|
1791
|
+
dtype_map.setdefault(CoilLabelType, np.dtype([('coil_number', np.dtype(np.uint32)), ('coil_name', np.dtype(np.object_))], align=True))
|
|
1792
|
+
dtype_map.setdefault(AcquisitionSystemInformationType, np.dtype([('system_vendor', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('system_model', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('system_field_strength_t', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.float32))], align=True)), ('relative_receiver_noise_bandwidth', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.float32))], align=True)), ('receiver_channels', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('coil_label', np.dtype(np.object_)), ('institution_name', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('station_name', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('device_id', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('device_serial_number', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True))], align=True))
|
|
1793
|
+
dtype_map.setdefault(ExperimentalConditionsType, np.dtype([('h1resonance_frequency_hz', np.dtype(np.int64))], align=True))
|
|
1794
|
+
dtype_map.setdefault(MatrixSizeType, np.dtype([('x', np.dtype(np.uint32)), ('y', np.dtype(np.uint32)), ('z', np.dtype(np.uint32))], align=True))
|
|
1795
|
+
dtype_map.setdefault(FieldOfViewMm, np.dtype([('x', np.dtype(np.float32)), ('y', np.dtype(np.float32)), ('z', np.dtype(np.float32))], align=True))
|
|
1796
|
+
dtype_map.setdefault(EncodingSpaceType, np.dtype([('matrix_size', get_dtype(MatrixSizeType)), ('field_of_view_mm', get_dtype(FieldOfViewMm))], align=True))
|
|
1797
|
+
dtype_map.setdefault(LimitType, np.dtype([('minimum', np.dtype(np.uint32)), ('maximum', np.dtype(np.uint32)), ('center', np.dtype(np.uint32))], align=True))
|
|
1798
|
+
dtype_map.setdefault(EncodingLimitsType, np.dtype([('kspace_encoding_step_0', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('kspace_encoding_step_1', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('kspace_encoding_step_2', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('average', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('slice', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('contrast', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('phase', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('repetition', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('set', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('segment', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_0', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_1', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_2', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_3', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_4', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_5', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_6', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True)), ('user_7', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(LimitType))], align=True))], align=True))
|
|
1799
|
+
dtype_map.setdefault(Trajectory, np.dtype(np.int32))
|
|
1800
|
+
dtype_map.setdefault(UserParameterLongType, np.dtype([('name', np.dtype(np.object_)), ('value', np.dtype(np.int64))], align=True))
|
|
1801
|
+
dtype_map.setdefault(UserParameterDoubleType, np.dtype([('name', np.dtype(np.object_)), ('value', np.dtype(np.float64))], align=True))
|
|
1802
|
+
dtype_map.setdefault(UserParameterStringType, np.dtype([('name', np.dtype(np.object_)), ('value', np.dtype(np.object_))], align=True))
|
|
1803
|
+
dtype_map.setdefault(TrajectoryDescriptionType, np.dtype([('identifier', np.dtype(np.object_)), ('user_parameter_long', np.dtype(np.object_)), ('user_parameter_double', np.dtype(np.object_)), ('user_parameter_string', np.dtype(np.object_)), ('comment', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True))], align=True))
|
|
1804
|
+
dtype_map.setdefault(AccelerationFactorType, np.dtype([('kspace_encoding_step_1', np.dtype(np.uint32)), ('kspace_encoding_step_2', np.dtype(np.uint32))], align=True))
|
|
1805
|
+
dtype_map.setdefault(CalibrationMode, np.dtype(np.int32))
|
|
1806
|
+
dtype_map.setdefault(InterleavingDimension, np.dtype(np.int32))
|
|
1807
|
+
dtype_map.setdefault(MultibandSpacingType, np.dtype([('d_z', np.dtype(np.object_))], align=True))
|
|
1808
|
+
dtype_map.setdefault(Calibration, np.dtype(np.int32))
|
|
1809
|
+
dtype_map.setdefault(MultibandType, np.dtype([('spacing', np.dtype(np.object_)), ('delta_kz', np.dtype(np.float32)), ('multiband_factor', np.dtype(np.uint32)), ('calibration', get_dtype(Calibration)), ('calibration_encoding', np.dtype(np.uint64))], align=True))
|
|
1810
|
+
dtype_map.setdefault(ParallelImagingType, np.dtype([('acceleration_factor', get_dtype(AccelerationFactorType)), ('calibration_mode', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(CalibrationMode))], align=True)), ('interleaving_dimension', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(InterleavingDimension))], align=True)), ('multiband', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(MultibandType))], align=True))], align=True))
|
|
1811
|
+
dtype_map.setdefault(EncodingType, np.dtype([('encoded_space', get_dtype(EncodingSpaceType)), ('recon_space', get_dtype(EncodingSpaceType)), ('encoding_limits', get_dtype(EncodingLimitsType)), ('trajectory', get_dtype(Trajectory)), ('trajectory_description', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(TrajectoryDescriptionType))], align=True)), ('parallel_imaging', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(ParallelImagingType))], align=True)), ('echo_train_length', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.int64))], align=True))], align=True))
|
|
1812
|
+
dtype_map.setdefault(DiffusionDimension, np.dtype(np.int32))
|
|
1813
|
+
dtype_map.setdefault(GradientDirectionType, np.dtype([('rl', np.dtype(np.float32)), ('ap', np.dtype(np.float32)), ('fh', np.dtype(np.float32))], align=True))
|
|
1814
|
+
dtype_map.setdefault(DiffusionType, np.dtype([('gradient_direction', get_dtype(GradientDirectionType)), ('bvalue', np.dtype(np.float32))], align=True))
|
|
1815
|
+
dtype_map.setdefault(SequenceParametersType, np.dtype([('t_r', np.dtype(np.object_)), ('t_e', np.dtype(np.object_)), ('t_i', np.dtype(np.object_)), ('flip_angle_deg', np.dtype(np.object_)), ('sequence_type', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True)), ('echo_spacing', np.dtype(np.object_)), ('diffusion_dimension', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(DiffusionDimension))], align=True)), ('diffusion', np.dtype(np.object_)), ('diffusion_scheme', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.object_))], align=True))], align=True))
|
|
1816
|
+
dtype_map.setdefault(UserParameterBase64Type, np.dtype([('name', np.dtype(np.object_)), ('value', np.dtype(np.object_))], align=True))
|
|
1817
|
+
dtype_map.setdefault(UserParametersType, np.dtype([('user_parameter_long', np.dtype(np.object_)), ('user_parameter_double', np.dtype(np.object_)), ('user_parameter_string', np.dtype(np.object_)), ('user_parameter_base64', np.dtype(np.object_))], align=True))
|
|
1818
|
+
dtype_map.setdefault(WaveformType, np.dtype(np.int32))
|
|
1819
|
+
dtype_map.setdefault(WaveformInformationType, np.dtype([('waveform_name', np.dtype(np.object_)), ('waveform_type', get_dtype(WaveformType)), ('user_parameters', get_dtype(UserParametersType))], align=True))
|
|
1820
|
+
dtype_map.setdefault(Header, np.dtype([('version', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.int64))], align=True)), ('subject_information', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(SubjectInformationType))], align=True)), ('study_information', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(StudyInformationType))], align=True)), ('measurement_information', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(MeasurementInformationType))], align=True)), ('acquisition_system_information', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(AcquisitionSystemInformationType))], align=True)), ('experimental_conditions', get_dtype(ExperimentalConditionsType)), ('encoding', np.dtype(np.object_)), ('sequence_parameters', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(SequenceParametersType))], align=True)), ('user_parameters', np.dtype([('has_value', np.dtype(np.bool_)), ('value', get_dtype(UserParametersType))], align=True)), ('waveform_information', np.dtype(np.object_))], align=True))
|
|
1821
|
+
dtype_map.setdefault(ImageFlags, np.dtype(np.uint64))
|
|
1822
|
+
dtype_map.setdefault(ImageType, np.dtype(np.int32))
|
|
1823
|
+
dtype_map.setdefault(ImageMetaData, np.dtype([('name', np.dtype(np.object_)), ('value', np.dtype(np.object_))], align=True))
|
|
1824
|
+
dtype_map.setdefault(Image, lambda type_args: np.dtype([('flags', get_dtype(ImageFlags)), ('measurement_uid', np.dtype(np.uint32)), ('field_of_view', np.dtype(np.float32), (3,)), ('position', np.dtype(np.float32), (3,)), ('col_dir', np.dtype(np.float32), (3,)), ('line_dir', np.dtype(np.float32), (3,)), ('slice_dir', np.dtype(np.float32), (3,)), ('patient_table_position', np.dtype(np.float32), (3,)), ('average', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('slice', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('contrast', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('phase', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('repetition', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('set', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('acquisition_time_stamp', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('physiology_time_stamp', np.dtype(np.object_)), ('image_type', get_dtype(ImageType)), ('image_index', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('image_series_index', np.dtype([('has_value', np.dtype(np.bool_)), ('value', np.dtype(np.uint32))], align=True)), ('user_int', np.dtype(np.object_)), ('user_float', np.dtype(np.object_)), ('data', np.dtype(np.object_)), ('meta', np.dtype(np.object_))], align=True))
|
|
1825
|
+
dtype_map.setdefault(Waveform, lambda type_args: np.dtype([('flags', np.dtype(np.uint64)), ('measurement_uid', np.dtype(np.uint32)), ('scan_counter', np.dtype(np.uint32)), ('time_stamp', np.dtype(np.uint32)), ('sample_time_us', np.dtype(np.float32)), ('waveform_id', np.dtype(np.uint32)), ('data', np.dtype(np.object_))], align=True))
|
|
1826
|
+
dtype_map.setdefault(WaveformUint32, get_dtype(types.GenericAlias(Waveform, (yardl.UInt32,))))
|
|
1827
|
+
dtype_map.setdefault(ImageUint16, get_dtype(types.GenericAlias(Image, (yardl.UInt16,))))
|
|
1828
|
+
dtype_map.setdefault(ImageInt16, get_dtype(types.GenericAlias(Image, (yardl.Int16,))))
|
|
1829
|
+
dtype_map.setdefault(ImageUint, get_dtype(types.GenericAlias(Image, (yardl.UInt32,))))
|
|
1830
|
+
dtype_map.setdefault(ImageInt, get_dtype(types.GenericAlias(Image, (yardl.Int32,))))
|
|
1831
|
+
dtype_map.setdefault(ImageFloat, get_dtype(types.GenericAlias(Image, (yardl.Float32,))))
|
|
1832
|
+
dtype_map.setdefault(ImageDouble, get_dtype(types.GenericAlias(Image, (yardl.Float64,))))
|
|
1833
|
+
dtype_map.setdefault(ImageComplexFloat, get_dtype(types.GenericAlias(Image, (yardl.ComplexFloat,))))
|
|
1834
|
+
dtype_map.setdefault(ImageComplexDouble, get_dtype(types.GenericAlias(Image, (yardl.ComplexDouble,))))
|
|
1835
|
+
dtype_map.setdefault(StreamItem, np.dtype(np.object_))
|
|
1836
|
+
|
|
1837
|
+
return get_dtype
|
|
1838
|
+
|
|
1839
|
+
get_dtype = _mk_get_dtype()
|
|
1840
|
+
|