mosamatic2 2.0.2__py3-none-any.whl → 2.0.4__py3-none-any.whl

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Files changed (60) hide show
  1. mosamatic2/app.py +4 -0
  2. mosamatic2/cli.py +34 -0
  3. mosamatic2/commands/__init__.py +0 -0
  4. mosamatic2/commands/calculatescores.py +73 -0
  5. mosamatic2/commands/createpngsfromsegmentations.py +65 -0
  6. mosamatic2/commands/dicom2nifti.py +46 -0
  7. mosamatic2/commands/rescaledicomimages.py +54 -0
  8. mosamatic2/commands/segmentmusclefatl3tensorflow.py +55 -0
  9. mosamatic2/constants.py +6 -3
  10. mosamatic2/core/data/__init__.py +5 -0
  11. mosamatic2/core/data/dicomimage.py +18 -0
  12. mosamatic2/core/data/dicomimageseries.py +26 -0
  13. mosamatic2/core/data/dixonseries.py +22 -0
  14. mosamatic2/core/data/filedata.py +26 -0
  15. mosamatic2/core/data/multidicomimage.py +30 -0
  16. mosamatic2/core/managers/logmanager.py +0 -2
  17. mosamatic2/core/pipelines/__init__.py +1 -0
  18. mosamatic2/core/pipelines/defaultpipeline.py +79 -0
  19. mosamatic2/core/pipelines/pipeline.py +14 -0
  20. mosamatic2/core/tasks/__init__.py +5 -0
  21. mosamatic2/core/tasks/calculatescorestask/__init__.py +0 -0
  22. mosamatic2/core/tasks/calculatescorestask/calculatescorestask.py +149 -0
  23. mosamatic2/core/tasks/createpngsfromsegmentationstask/__init__.py +0 -0
  24. mosamatic2/core/tasks/createpngsfromsegmentationstask/createpngsfromsegmentationstask.py +52 -0
  25. mosamatic2/core/tasks/dicom2niftitask/__init__.py +0 -0
  26. mosamatic2/core/tasks/dicom2niftitask/dicom2niftitask.py +24 -0
  27. mosamatic2/core/tasks/rescaledicomimagestask/__init__.py +0 -0
  28. mosamatic2/core/tasks/rescaledicomimagestask/rescaledicomimagestask.py +64 -0
  29. mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/__init__.py +0 -0
  30. mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/paramloader.py +39 -0
  31. mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/segmentmusclefatl3tensorflowtask.py +121 -0
  32. mosamatic2/core/tasks/task.py +50 -0
  33. mosamatic2/core/utils.py +316 -0
  34. mosamatic2/server.py +112 -1
  35. mosamatic2/ui/mainwindow.py +150 -1
  36. mosamatic2/ui/resources/VERSION +1 -1
  37. mosamatic2/ui/widgets/dialogs/__init__.py +0 -0
  38. mosamatic2/ui/widgets/dialogs/dialog.py +16 -0
  39. mosamatic2/ui/widgets/dialogs/helpdialog.py +9 -0
  40. mosamatic2/ui/widgets/panels/__init__.py +0 -0
  41. mosamatic2/ui/widgets/panels/defaultpanel.py +31 -0
  42. mosamatic2/ui/widgets/panels/logpanel.py +65 -0
  43. mosamatic2/ui/widgets/panels/mainpanel.py +82 -0
  44. mosamatic2/ui/widgets/panels/pipelines/__init__.py +0 -0
  45. mosamatic2/ui/widgets/panels/pipelines/defaultpipelinepanel.py +299 -0
  46. mosamatic2/ui/widgets/panels/stackedpanel.py +22 -0
  47. mosamatic2/ui/widgets/panels/taskpanel.py +6 -0
  48. mosamatic2/ui/widgets/panels/tasks/__init__.py +0 -0
  49. mosamatic2/ui/widgets/panels/tasks/calculatescorestaskpanel.py +215 -0
  50. mosamatic2/ui/widgets/panels/tasks/createpngsfromsegmentationstaskpanel.py +186 -0
  51. mosamatic2/ui/widgets/panels/tasks/dicom2niftitaskpanel.py +183 -0
  52. mosamatic2/ui/widgets/panels/tasks/rescaledicomimagestaskpanel.py +184 -0
  53. mosamatic2/ui/widgets/panels/tasks/segmentmusclefatl3tensorflowtaskpanel.py +216 -0
  54. mosamatic2/ui/widgets/panels/tasks/selectslicefromscantaskpanel.py +184 -0
  55. mosamatic2/ui/worker.py +29 -0
  56. {mosamatic2-2.0.2.dist-info → mosamatic2-2.0.4.dist-info}/METADATA +6 -2
  57. mosamatic2-2.0.4.dist-info/RECORD +74 -0
  58. {mosamatic2-2.0.2.dist-info → mosamatic2-2.0.4.dist-info}/entry_points.txt +1 -0
  59. mosamatic2-2.0.2.dist-info/RECORD +0 -26
  60. {mosamatic2-2.0.2.dist-info → mosamatic2-2.0.4.dist-info}/WHEEL +0 -0
mosamatic2-2.0.4.dist-info/RECORD ADDED
@@ -0,0 +1,74 @@
1
+ models.py,sha256=Kx6oWKt7IpTTxrhBDrX61X-ZX12J7yPkJFuhVDsDHoQ,8807
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+ mosamatic2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/app.py,sha256=RIUa5tvMYFcmEII4xZPLZZdx9dXWqBvwkxkl_R97Jkw,860
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+ mosamatic2/cli.py,sha256=bVd2zf7CYpVIc-zRweWgRO7jOPZi68JhnnDBuq-L43E,1201
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+ mosamatic2/commands/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
6
+ mosamatic2/commands/calculatescores.py,sha256=Lb8Q8L2yq7Tt6VBJ6_lltRuldrev_pac6fcgF-xzZyE,1984
7
+ mosamatic2/commands/createpngsfromsegmentations.py,sha256=uUAQJVTqOkBCfENzi21RBNYvf6_nuesx1MeR3j_-7dM,1682
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+ mosamatic2/commands/dicom2nifti.py,sha256=4hMvglxdOid7p7P_Jc-Tudsf93JRMlYaQsEQctLq2d4,1015
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+ mosamatic2/commands/rescaledicomimages.py,sha256=25QdCzB5s0sRwkTb3o5zco2bIwy6LttNf7i97kGBDYQ,1280
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+ mosamatic2/commands/segmentmusclefatl3tensorflow.py,sha256=CdScmA_EQicaN4GY5bBUOYwfhDPqy9om2sxY3WrtmM0,1424
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+ mosamatic2/constants.py,sha256=MVYMwO-x2jQSN37o3zNkRseVQ1nYRA3mLv3v_Q0Mlds,1284
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+ mosamatic2/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/core/data/__init__.py,sha256=j9iGqUTJlGF0N0gPrzzpe_Dhv0Bj9c6FdQ1g7U-_j2g,298
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+ mosamatic2/core/data/dicomimage.py,sha256=jv1KIZBgN3SFjqgjXcPG_cx23RPauJ2TF1CzA9vj3Z8,484
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+ mosamatic2/core/data/dicomimageseries.py,sha256=OZkNi15crL8nEA-PGYsM0k9NMi2mMHRvDRePr_-czvA,849
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+ mosamatic2/core/data/dixonseries.py,sha256=kq9fy65MSM2XwiScqp7b3rQ09JmpyGwbG6ldZsuPRrM,516
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+ mosamatic2/core/data/filedata.py,sha256=hCnpizGqOpxzIADJkDS2_NSmKVLL1u49TYjSJE5UXQo,515
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+ mosamatic2/core/data/multidicomimage.py,sha256=cdd0H4Dq49h7NLKBx51_h_HZVnH7-reu48PY8m6tXwU,1034
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+ mosamatic2/core/managers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/core/managers/logmanager.py,sha256=NEaXvhl0aILjBbK710GaWanVuuNvB51HpHhE5rgYvng,1391
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+ mosamatic2/core/managers/logmanagerlistener.py,sha256=Gaig07yjBnyQq9I8sN85olTEeDCDyCFQnEJdwzvmgvc,99
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+ mosamatic2/core/pipelines/__init__.py,sha256=MXoylu34AlcyudJpjuLa4B7K9gZmxLnZGDaEkK9Ygio,69
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+ mosamatic2/core/pipelines/defaultpipeline.py,sha256=EUblRhLZXhslz9bdBmx8v9yjpgOdsHviqQZ5elK8gNQ,2901
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+ mosamatic2/core/pipelines/pipeline.py,sha256=mRxKXLKwgKDpc8R9mCI6gDKGJ2lKVxRQ__Sf0Mfn_Qc,384
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+ mosamatic2/core/singleton.py,sha256=FV0k_LlOCmFhlWN6gf1c2x7YXWyd8-7DsIMvOKrI6NY,224
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+ mosamatic2/core/tasks/__init__.py,sha256=3bWBH2Q5X44_k7s3wei7AHm86MLEqoySyxSN7UKuqRs,545
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+ mosamatic2/core/tasks/calculatescorestask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
28
+ mosamatic2/core/tasks/calculatescorestask/calculatescorestask.py,sha256=1CUJK9IsePBbEuF3-0LnZp1sWMxPDiJaNy0a-8DaTUE,6576
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+ mosamatic2/core/tasks/createpngsfromsegmentationstask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
30
+ mosamatic2/core/tasks/createpngsfromsegmentationstask/createpngsfromsegmentationstask.py,sha256=1UpOsp1CH668BQ0g4tALou_tFgisC306VcvqOKSDuTo,1884
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+ mosamatic2/core/tasks/dicom2niftitask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
32
+ mosamatic2/core/tasks/dicom2niftitask/dicom2niftitask.py,sha256=9VqDDCShUG09Qhppia-5X-rkVbUzI4VF8rBVia19Tvs,762
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+ mosamatic2/core/tasks/rescaledicomimagestask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/core/tasks/rescaledicomimagestask/rescaledicomimagestask.py,sha256=vGSpMJoXFtE-IHGxTEO9DMkerMJcfG5r9tXgtvkxm6Y,3053
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+ mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
36
+ mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/paramloader.py,sha256=VxTCOYK_1VRAG83P-ulm0LPvqXI-0iT5BCr0Rdr7MWg,900
37
+ mosamatic2/core/tasks/segmentmusclefatl3tensorflowtask/segmentmusclefatl3tensorflowtask.py,sha256=bDRG9phYSF4o4mFsdJhyJ613CqOixFPTd5yL2gBFSPY,5351
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+ mosamatic2/core/tasks/task.py,sha256=APPnid6dpSGkPuDqU1vm2RIMR5vkpvbP1CPHUMjympg,1691
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+ mosamatic2/core/utils.py,sha256=RHBcvrUshese6NG_OigO4ZGGR3iCOmmeDJjgPnLpaBo,10753
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+ mosamatic2/server.py,sha256=UDALqk_TZ5Vz7ZOjzhV2-7-kHIPM-_OKXFV7lf2R1t0,3617
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+ mosamatic2/ui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/ui/mainwindow.py,sha256=efmZAC5vYEdCg5bw1ixrcACzYN2xe15xyrNwnXersyI,10100
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+ mosamatic2/ui/resources/icons/mosamatic2.icns,sha256=OfhC-diJTIgaNMOezxKKilGsY7mRkaGdU5dGr0MOjIA,2994125
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+ mosamatic2/ui/resources/icons/mosamatic2.ico,sha256=ySD3RYluHK3pgS0Eas7eKrVk_AskdLQ4qs_IT-wNhq4,12229
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+ mosamatic2/ui/resources/icons/spinner.gif,sha256=rvaac6GUZauHSPFSOLWr0RmLfjmtZih2Q8knQ2WP3Po,16240
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+ mosamatic2/ui/resources/images/body-composition.jpg,sha256=KD-BudbXwThB4lJOZZN-ad5-TZRaaZ5cKTH0Ar1TOZs,21227
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+ mosamatic2/ui/resources/VERSION,sha256=CxHeq1Bk1fry3nkuFpVDAvnw27-hr4X2onfG3ZD1M6U,8
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+ mosamatic2/ui/settings.py,sha256=YEVHYJIfNsqMO3v1pjzgh7Pih9GGoUX7S9s8S-sBNUk,2121
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+ mosamatic2/ui/utils.py,sha256=6bbPIrh4RJ_yhQKNZrgPbL4XeUEogjIjbk_e5c3QS5g,853
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+ mosamatic2/ui/widgets/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
51
+ mosamatic2/ui/widgets/dialogs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
52
+ mosamatic2/ui/widgets/dialogs/dialog.py,sha256=whp1xSDVW2t85eh0xvyx1WofEmEQLRbflDPlynwBhJo,354
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+ mosamatic2/ui/widgets/dialogs/helpdialog.py,sha256=WTm8w2IE1iGfOKILSs6567co6YGAf9r9mTC9SqmFlto,169
54
+ mosamatic2/ui/widgets/panels/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/ui/widgets/panels/defaultpanel.py,sha256=Ry32Xv6ibxm6NdZ7eBOCcisWNcmn7PQUT2JLT5n5zhE,923
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+ mosamatic2/ui/widgets/panels/logpanel.py,sha256=ogswJ6_ryb6u7JeVnOsh2Ez8KWg6jtCFZwij8s87xO4,1861
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+ mosamatic2/ui/widgets/panels/mainpanel.py,sha256=KqI8dA7GpLFd2unqVRTBkNxdnh6AWGpVPwQuaEg8PmI,2431
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+ mosamatic2/ui/widgets/panels/pipelines/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/ui/widgets/panels/pipelines/defaultpipelinepanel.py,sha256=cmjbjllDgwA5zP5EpfRwiYyJI7iXEtPAvh4zSXOhCSw,13714
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+ mosamatic2/ui/widgets/panels/stackedpanel.py,sha256=dK1YWuHUzxRhVb5gP0Lu9rAiW4XagjcHmGF__5Lpufk,657
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+ mosamatic2/ui/widgets/panels/taskpanel.py,sha256=t8lIx1P8sS1Fa-aNm6eEha6297pJQNbBRizkobBexz8,170
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+ mosamatic2/ui/widgets/panels/tasks/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ mosamatic2/ui/widgets/panels/tasks/calculatescorestaskpanel.py,sha256=kWtRI0SnjSzvE4MGTxs2-W8f3X3uP3LRtXnfyAl8HL0,9381
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+ mosamatic2/ui/widgets/panels/tasks/createpngsfromsegmentationstaskpanel.py,sha256=Be7SJfYHDAvPCC52iVqbrgr3CbwnAck37Ph_BbyhKBE,7873
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+ mosamatic2/ui/widgets/panels/tasks/dicom2niftitaskpanel.py,sha256=mb5LxDuhkwA08LcHGigul7xmef_wTGrmr-DZ72O_joc,7474
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+ mosamatic2/ui/widgets/panels/tasks/rescaledicomimagestaskpanel.py,sha256=_K-XM4zvzq_AMugLqN4p87iEsfX594qYSVnfjNlmAfU,7591
67
+ mosamatic2/ui/widgets/panels/tasks/segmentmusclefatl3tensorflowtaskpanel.py,sha256=pLEpUXx_vi6PfOykAwp95m5yLRrIvdF_XaupHBOW31U,9624
68
+ mosamatic2/ui/widgets/panels/tasks/selectslicefromscantaskpanel.py,sha256=Q5txmTPssKEQpy_yc-iKCN22K5h3B_7WzPP885uP79Q,7506
69
+ mosamatic2/ui/widgets/splashscreen.py,sha256=MS-OczOWfwwEQNQd-JWe9_Mh57css0cSQgbu973rwQo,4056
70
+ mosamatic2/ui/worker.py,sha256=v7e3gq7MUudgpB1BJW-P7j5wurzu6-HG5m7I6WHgJp0,699
71
+ mosamatic2-2.0.4.dist-info/entry_points.txt,sha256=MCUpKkgbej1clgp8EqlLQGs0BIKwGPcBPiVWLfGz9Gw,126
72
+ mosamatic2-2.0.4.dist-info/METADATA,sha256=89x_i4kNHoZwtq3qBwy5QPOHC-ljsHJsntQDCh5km50,1402
73
+ mosamatic2-2.0.4.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
74
+ mosamatic2-2.0.4.dist-info/RECORD,,
{mosamatic2-2.0.2.dist-info → mosamatic2-2.0.4.dist-info}/entry_points.txt RENAMED
@@ -1,4 +1,5 @@
1
1
  [console_scripts]
2
2
  mosamatic2=mosamatic2.app:main
3
+ mosamatic2-cli=mosamatic2.cli:main
3
4
  mosamatic2-server=mosamatic2.server:main
4
5
 
mosamatic2-2.0.2.dist-info/RECORD DELETED
@@ -1,26 +0,0 @@
1
- models.py,sha256=Kx6oWKt7IpTTxrhBDrX61X-ZX12J7yPkJFuhVDsDHoQ,8807
2
- mosamatic2/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- mosamatic2/app.py,sha256=VpwdCz4L37k4-nxLEdtJDfPUOW-76ujXMqjNOUQ_ReU,817
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- mosamatic2/constants.py,sha256=njwNcYF0J-A0mtYNNV0iOqhcEbdwWS7ZNk_vUcPhYlI,1244
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- mosamatic2/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- mosamatic2/core/managers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- mosamatic2/core/managers/logmanager.py,sha256=ewVCJuBSHsiu7GH1eSY7MJkyG2yUECqDCNVVAvakvmY,1464
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- mosamatic2/core/managers/logmanagerlistener.py,sha256=Gaig07yjBnyQq9I8sN85olTEeDCDyCFQnEJdwzvmgvc,99
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- mosamatic2/core/singleton.py,sha256=FV0k_LlOCmFhlWN6gf1c2x7YXWyd8-7DsIMvOKrI6NY,224
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- mosamatic2/core/utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- mosamatic2/server.py,sha256=xlXxCn4LQWsC9Ih07P2jbSecUz3FPwbLljUbVesDL5I,54
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- mosamatic2/ui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- mosamatic2/ui/mainwindow.py,sha256=FUkobBFO3hLSXdgmIPFad4rD4MwCb3ctrCpWV81xUOw,2259
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- mosamatic2/ui/resources/icons/mosamatic2.icns,sha256=OfhC-diJTIgaNMOezxKKilGsY7mRkaGdU5dGr0MOjIA,2994125
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- mosamatic2/ui/resources/icons/mosamatic2.ico,sha256=ySD3RYluHK3pgS0Eas7eKrVk_AskdLQ4qs_IT-wNhq4,12229
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- mosamatic2/ui/resources/icons/spinner.gif,sha256=rvaac6GUZauHSPFSOLWr0RmLfjmtZih2Q8knQ2WP3Po,16240
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- mosamatic2/ui/resources/images/body-composition.jpg,sha256=KD-BudbXwThB4lJOZZN-ad5-TZRaaZ5cKTH0Ar1TOZs,21227
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- mosamatic2/ui/resources/VERSION,sha256=HL_sz0RyqKYdNCVXFxdbRvbfZxYQJ0UKwdgvFizh0mI,8
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- mosamatic2/ui/settings.py,sha256=YEVHYJIfNsqMO3v1pjzgh7Pih9GGoUX7S9s8S-sBNUk,2121
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- mosamatic2/ui/utils.py,sha256=6bbPIrh4RJ_yhQKNZrgPbL4XeUEogjIjbk_e5c3QS5g,853
21
- mosamatic2/ui/widgets/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
22
- mosamatic2/ui/widgets/splashscreen.py,sha256=MS-OczOWfwwEQNQd-JWe9_Mh57css0cSQgbu973rwQo,4056
23
- mosamatic2-2.0.2.dist-info/entry_points.txt,sha256=x_5SFJN4XwGnwcHdD98kIxkqkvqY7eOL9L-zmm3hFy8,91
24
- mosamatic2-2.0.2.dist-info/METADATA,sha256=SMZ5rCb1ZW3oC5_mh-gj6Nsc7GFTdrybFk6UTQY9Ldo,1153
25
- mosamatic2-2.0.2.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
26
- mosamatic2-2.0.2.dist-info/RECORD,,