monai-weekly 1.5.dev2509__py3-none-any.whl → 1.5.dev2510__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (59) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/deepedit/interaction.py +1 -1
  4. monai/apps/deepgrow/interaction.py +1 -1
  5. monai/apps/detection/networks/retinanet_detector.py +1 -1
  6. monai/apps/detection/networks/retinanet_network.py +5 -5
  7. monai/apps/detection/utils/box_coder.py +2 -2
  8. monai/apps/mmars/mmars.py +1 -1
  9. monai/apps/reconstruction/networks/blocks/varnetblock.py +1 -1
  10. monai/bundle/scripts.py +3 -4
  11. monai/data/dataset.py +2 -9
  12. monai/data/utils.py +1 -1
  13. monai/data/video_dataset.py +1 -1
  14. monai/engines/evaluator.py +11 -16
  15. monai/engines/trainer.py +11 -17
  16. monai/engines/utils.py +1 -1
  17. monai/engines/workflow.py +2 -2
  18. monai/fl/client/monai_algo.py +1 -1
  19. monai/handlers/checkpoint_loader.py +1 -1
  20. monai/inferers/inferer.py +6 -6
  21. monai/inferers/merger.py +16 -13
  22. monai/losses/perceptual.py +1 -1
  23. monai/losses/sure_loss.py +1 -1
  24. monai/networks/blocks/crossattention.py +1 -6
  25. monai/networks/blocks/feature_pyramid_network.py +4 -2
  26. monai/networks/blocks/selfattention.py +1 -6
  27. monai/networks/blocks/upsample.py +3 -11
  28. monai/networks/layers/vector_quantizer.py +2 -2
  29. monai/networks/nets/hovernet.py +5 -4
  30. monai/networks/nets/resnet.py +2 -2
  31. monai/networks/nets/senet.py +1 -1
  32. monai/networks/nets/swin_unetr.py +46 -49
  33. monai/networks/nets/transchex.py +3 -2
  34. monai/networks/nets/vista3d.py +7 -7
  35. monai/networks/utils.py +5 -4
  36. monai/transforms/intensity/array.py +1 -1
  37. monai/transforms/spatial/array.py +6 -6
  38. monai/utils/misc.py +1 -1
  39. monai/utils/state_cacher.py +1 -1
  40. {monai_weekly-1.5.dev2509.dist-info → monai_weekly-1.5.dev2510.dist-info}/METADATA +4 -3
  41. {monai_weekly-1.5.dev2509.dist-info → monai_weekly-1.5.dev2510.dist-info}/RECORD +59 -59
  42. tests/bundle/test_bundle_download.py +16 -6
  43. tests/config/test_cv2_dist.py +1 -2
  44. tests/integration/test_integration_bundle_run.py +2 -4
  45. tests/integration/test_integration_classification_2d.py +1 -1
  46. tests/integration/test_integration_fast_train.py +2 -2
  47. tests/integration/test_integration_segmentation_3d.py +1 -1
  48. tests/metrics/test_compute_multiscalessim_metric.py +3 -3
  49. tests/metrics/test_surface_dice.py +3 -3
  50. tests/networks/nets/test_autoencoderkl.py +1 -1
  51. tests/networks/nets/test_controlnet.py +1 -1
  52. tests/networks/nets/test_diffusion_model_unet.py +1 -1
  53. tests/networks/nets/test_network_consistency.py +1 -1
  54. tests/networks/nets/test_swin_unetr.py +1 -1
  55. tests/networks/nets/test_transformer.py +1 -1
  56. tests/networks/test_save_state.py +1 -1
  57. {monai_weekly-1.5.dev2509.dist-info → monai_weekly-1.5.dev2510.dist-info}/LICENSE +0 -0
  58. {monai_weekly-1.5.dev2509.dist-info → monai_weekly-1.5.dev2510.dist-info}/WHEEL +0 -0
  59. {monai_weekly-1.5.dev2509.dist-info → monai_weekly-1.5.dev2510.dist-info}/top_level.txt +0 -0
@@ -1,5 +1,5 @@
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- monai/__init__.py,sha256=2QSN66gMNzIDVAeBWVrsS3xgXmpc90Ksxr0j3D3KLiQ,4095
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- monai/_version.py,sha256=3pISgTcfhG3j_LA8zhH9EcyDi6PgzKxbNALoD_5HCps,503
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+ monai/__init__.py,sha256=l1ax5Ls5iQdysj0z46xZkpVHIq5j_YK57rsd8v_uEJQ,4095
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+ monai/_version.py,sha256=aYoA6EoQPJrkhBGJbbOno24738m4YIRubnr5NRpJXCo,503
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  monai/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  monai/_extensions/__init__.py,sha256=NEBPreRhQ8H9gVvgrLr_y52_TmqB96u_u4VQmeNT93I,642
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  monai/_extensions/loader.py,sha256=7SiKw36q-nOzH8CRbBurFrz7GM40GCu7rc93Tm8XpnI,3643
@@ -21,19 +21,19 @@ monai/apps/auto3dseg/hpo_gen.py,sha256=VMfN0M5Z8Mq3Epu4fgOD5N6X-BY2PARIC69wW2t5E
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  monai/apps/auto3dseg/transforms.py,sha256=V57mf8dTVBjiTfcgnMMdtMLmAzpnNrcl1ae5cYPjjlI,3856
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  monai/apps/auto3dseg/utils.py,sha256=7DPJbsL9YbhRdMZ6dEvCA_t_uLSSz7-WZSU2pMY4_qo,3138
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  monai/apps/deepedit/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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- monai/apps/deepedit/interaction.py,sha256=h9zTmhHAmwndR315RknqXtLWYqyYGvdcmjP6EpRrzHg,4501
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+ monai/apps/deepedit/interaction.py,sha256=jY_uxPhgaYpMggMKqgMJNc-GWxswRKwaKoUtf3B7TFE,4498
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  monai/apps/deepedit/transforms.py,sha256=Udj35m10Irek5Gtqo6Hgv6Lt7S6jSo-z0NuyVbs800o,38108
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  monai/apps/deepgrow/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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  monai/apps/deepgrow/dataset.py,sha256=W0wv1QujA4sZgrAcBS64dl3OBbDBM2cF4RK0fDCQnRU,10054
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- monai/apps/deepgrow/interaction.py,sha256=-smtOl93i_SDEo_Yo8DE5U3FnDrUcdJWeP14nCq5GS4,3748
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+ monai/apps/deepgrow/interaction.py,sha256=Und57h06LSZ9W7CAWh7evPU7l97XZIB5KuEMvVCvMtM,3745
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  monai/apps/deepgrow/transforms.py,sha256=RmKMoN4sqhT84ognTJt55t6UtkL_OpkzRcP5VPseSss,43349
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  monai/apps/detection/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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  monai/apps/detection/metrics/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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  monai/apps/detection/metrics/coco.py,sha256=bpF6hAAMKsBNLfat-Fzh0CR-0swDsAAVcwTaZ-lo1_g,26618
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  monai/apps/detection/metrics/matching.py,sha256=GF4wgH5Let7GwW1SGwzfzz5BRnCVEhDe7_KR7zpLr44,17161
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  monai/apps/detection/networks/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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- monai/apps/detection/networks/retinanet_detector.py,sha256=-EcGvDJK13o7qqx6bUHtxEniIdCXriIzwty1o5pmG90,53640
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- monai/apps/detection/networks/retinanet_network.py,sha256=Xbx1WeGWHkQC7VJUAgYD3GjGizehF8_wWntjdFYySD4,19038
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+ monai/apps/detection/networks/retinanet_detector.py,sha256=8PriT0FTy9Dyt8hw1iaPxpKC7A81PMecJj02F4ndzag,53659
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+ monai/apps/detection/networks/retinanet_network.py,sha256=nIIPRReN_4Q0-zvj53o6KFciPEIibbWDpKwbATH9nHc,19170
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  monai/apps/detection/transforms/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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  monai/apps/detection/transforms/array.py,sha256=CHc-zl7IPlKYPBVR88zVT6_eBFElPihtkfO9oo2Bsak,24546
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  monai/apps/detection/transforms/box_ops.py,sha256=3RFK8zNH8ufpHT_aB5xFR2wXrQauBQEWQyxNojl1mSY,18035
@@ -41,7 +41,7 @@ monai/apps/detection/transforms/dictionary.py,sha256=OGEYrq2F8gFjYRYv7ZdlWFM6yYR
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  monai/apps/detection/utils/ATSS_matcher.py,sha256=aajY2UJ-Ot9L5KDwORFOCuMsTQEU02BZ9-tNMfIYH98,13532
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  monai/apps/detection/utils/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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  monai/apps/detection/utils/anchor_utils.py,sha256=coSzVq5ictzWL4XqwtlLTKlzdel6cfHFLbvM6zOiq8M,18718
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- monai/apps/detection/utils/box_coder.py,sha256=81Qe8wf6IRb4kJgcS957yWdOpY_G8nUdyIFPXxpMQvk,11120
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+ monai/apps/detection/utils/box_coder.py,sha256=VSbqcNOgH153-3br7kmYpUlcaoE_D4vtFoDjG98hNzE,11174
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  monai/apps/detection/utils/box_selector.py,sha256=uXI0YrhugYR68xYshRs5JpPTT1nL3QMMS1nJ_RpddVo,9031
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  monai/apps/detection/utils/detector_utils.py,sha256=pU7bOzH-ay9Lnzu1aHCrIwlaGVf5xj13E7Somx_vFnk,10306
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  monai/apps/detection/utils/hard_negative_sampler.py,sha256=PywdXkFIAdudmp3W8JWM_CcLC3BKWQh5x1y0tuuokcg,13890
@@ -53,7 +53,7 @@ monai/apps/generation/maisi/networks/autoencoderkl_maisi.py,sha256=FxHsB7W1I11Np
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  monai/apps/generation/maisi/networks/controlnet_maisi.py,sha256=0K2uyMfvc1-2cFCoNDngeMbzcPpvFR1JZ0fqF9pj8r4,7707
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  monai/apps/generation/maisi/networks/diffusion_model_unet_maisi.py,sha256=XFOiy6GngXC_OKM1dUiel_gp71yUFWgPErYdgrVLQAU,19072
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  monai/apps/mmars/__init__.py,sha256=BolpgEi9jNBgrOQd3Kwp-9QQLeWQwQtlN_MJkK1eu5s,726
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- monai/apps/mmars/mmars.py,sha256=AYsx5FDmJ0dT0hAkWGYhM470aPIG23PYloHihDZfOKE,13115
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+ monai/apps/mmars/mmars.py,sha256=24JylLuw-qTDsTnTK4Y5kAbF_nWdivrSRS8EMGy69oQ,13134
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  monai/apps/mmars/model_desc.py,sha256=k7WSMRuyQN8xPax8aUmGKiTNZmcVatdqPYCgxDih-x4,9996
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  monai/apps/nnunet/__init__.py,sha256=gyqmg1fxPf3RF6LL25gnpMTfNS14uxweuJ93e4UzjB8,745
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  monai/apps/nnunet/__main__.py,sha256=qrloBLymK98OPcaBKocrlF8io2h4mUuXJPFVLZT-XDo,832
@@ -86,7 +86,7 @@ monai/apps/reconstruction/fastmri_reader.py,sha256=CbAWHN9-b8TFgIpsu1UmS0zHZg3lv
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  monai/apps/reconstruction/mri_utils.py,sha256=WEentr9IfCdTRcRELYkIgRx2oCaIoc1JEVE1FJfQlqQ,2000
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  monai/apps/reconstruction/networks/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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  monai/apps/reconstruction/networks/blocks/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
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- monai/apps/reconstruction/networks/blocks/varnetblock.py,sha256=wloM8wy_DbFCuCDrK68q5tH4DPMve7raPnZWPmDgrCk,4167
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+ monai/apps/reconstruction/networks/blocks/varnetblock.py,sha256=l6Ug_0FQWuwBSoA_rgjjHdaCr8kV2hQm33TzrCDp-dk,4183
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  monai/apps/reconstruction/networks/nets/coil_sensitivity_model.py,sha256=ZSmyW4FzN-tFvbbchSUma7VGzCiEZJXN65nXdcFbJzk,6215
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@@ -114,7 +114,7 @@ monai/bundle/config_item.py,sha256=rMjXSGkjJZdi04BwSHwCcIwzIb_TflmC3xDhC3SVJRs,1
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  monai/bundle/reference_resolver.py,sha256=GXCMK4iogxxE6VocsmAbUrcXosmC5arnjeG9zYhHKpg,16748
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- monai/bundle/scripts.py,sha256=p7wlT0BplTIdW4DbxRPotf_tLsgddvtklW1kcAEPBZQ,91016
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+ monai/bundle/scripts.py,sha256=VE3hIAcPfncbT1MGyLk0by1ZtA9jit6Hc7djrUUKUX8,91018
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@@ -124,7 +124,7 @@ monai/data/__init__.py,sha256=loDwAMF14hb4HS04SwukoIchIfU6iGY-xPrJVGyVwBo,5167
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  monai/data/csv_saver.py,sha256=fcZF4kBNQnDFwQjV9TS4zjq_zqsv_u3QldxRprMC7zI,4952
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  monai/data/dataloader.py,sha256=GC1x8aZJaidXN8zaA-Vl6iEHlTP4ocjIvRhCv74elkQ,4459
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- monai/data/dataset.py,sha256=iVDyCv7t2VG55CVp6hUOhg4eZcEc8bZBHRJX14VW2YI,79067
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+ monai/data/dataset.py,sha256=ysGlfrVmiXM6O42s-CcewNo_EqZ29uZ1M_sS_rgo1EQ,78731
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@@ -143,26 +143,26 @@ monai/data/test_time_augmentation.py,sha256=KgIcPDwF_KelBCX118J5gx13sefGaDgQFUDg
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- monai/data/utils.py,sha256=80SjoKYSoyIBz2AZm0F8jHELfBxCanlK6CR6NJ_xiaw,66422
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- monai/data/video_dataset.py,sha256=mMTZCkgAx_BBoF4HHWcmEuT9zoNoUVPFtPeYYt76t-A,9075
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+ monai/data/utils.py,sha256=rZ-61OUVeMr37vsxVTMoQBw15-cLNJQP5szFQSZlS_Q,66448
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+ monai/data/video_dataset.py,sha256=pUZhaYqSUfacOCAs53UnNXWH2oO99cK8q-7jqujeyqU,9105
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- monai/engines/evaluator.py,sha256=d0V4Ko1mcVsr9PtOhhtJYy4SVtrXuKdZ9yWM9mCYpAA,26961
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- monai/engines/trainer.py,sha256=CmCw0C20A1EUgmpBt_eGHp9ObIJO5shqF7bQGJVskc0,38448
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- monai/engines/utils.py,sha256=YGaa1Gk2b3bBtodbToGaSOD-s9X7wMgfgESOozZCLrM,15632
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- monai/engines/workflow.py,sha256=FXZt8wN8m2U7wmXwoI0t1ILeieqsHtPwt5P8cMX71_A,15495
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+ monai/engines/trainer.py,sha256=V9wRSJL8FVXv5gJufFFBdz23zexSzzdQPyGOs0IrNoU,38129
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+ monai/engines/utils.py,sha256=Lj76ai4jrf3TsCUng3U4I5Pa97skbw2jMNE_Ssyru50,15658
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+ monai/engines/workflow.py,sha256=pvMT-dANo_Lf4NsKyzLup2s3VbmKSYEUt4q2Pzfp3Ow,15483
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- monai/handlers/checkpoint_loader.py,sha256=Y0qNBq5b-GJ-XOJNjuslegCpIGPZYOdNs3PxzNYCCm8,7432
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+ monai/handlers/checkpoint_loader.py,sha256=kbnfhwEgdnOJFjKQCuHlwJllckC1xWkhj-cwXDyDmkU,7452
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@@ -195,8 +195,8 @@ monai/handlers/trt_handler.py,sha256=uWFdgC8QKRkcNwWfKIbQMdK6-MX_1ON0mKabeIn1ltI
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+ monai/networks/blocks/crossattention.py,sha256=8rb1n41NRGjMHDegWXm9jlBHTaXFxEqgNLN8xsxXQzI,8348
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- monai/networks/blocks/feature_pyramid_network.py,sha256=_DeAy_lNnPqjNiJLcopjqe_PHVThACctrgbXmSSB3Jw,10554
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+ monai/networks/blocks/feature_pyramid_network.py,sha256=zHMXB_hl92kmuJIe0rTvQlzQn1W77WTQZ7XaoivktEw,10631
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- monai/networks/blocks/selfattention.py,sha256=fZGtQwtSvU5aoQ4DWnUbR4DWUA-oEa6L6x3BkHkCUVI,9844
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+ monai/networks/blocks/selfattention.py,sha256=oH4rOT_OpalGeZOTIanBWWJ88RjriQ9W629tZ6-W-iE,9553
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+ monai/networks/blocks/upsample.py,sha256=WZXqstlYSYQ3BlA-QXS94z7olM1wEXoCZh12cDOm8_U,13523
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@@ -290,7 +290,7 @@ monai/networks/layers/gmm.py,sha256=Aq-YCHgUalgOZQ0x5mwYKJe1G7aiCiJybdkPTiiT120,
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- monai/networks/layers/vector_quantizer.py,sha256=0PCcaH5_uaxFORHgEetQKazq74jgOVmvQJ3h4Ywat6Y,10058
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+ monai/networks/layers/vector_quantizer.py,sha256=N1WrUjlGsYc3GYF-aJyvf9XIF7xfnSGYYoD3fyAji9c,10056
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@@ -312,7 +312,7 @@ monai/networks/nets/flexible_unet.py,sha256=VN3cJQPMmY--TpZkuDwEWonPgJc4R3JKBwJC
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- monai/networks/nets/hovernet.py,sha256=gQDeDGqCwjJACTPmQLAx9nPRBO_D65F-scx15w3Ho_Q,28645
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+ monai/networks/nets/hovernet.py,sha256=CeksvFWFsIcV70q-JS1QneuMf7vKR8aH1LBz7yaSswA,28734
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@@ -321,21 +321,21 @@ monai/networks/nets/patchgan_discriminator.py,sha256=yTT0on0lzlDwSu4B9McMqdxqu5x
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- monai/networks/nets/resnet.py,sha256=oo1MCA9hccBVwDcMrZNpVmbDSRn3dOEkrn3DbKW2WZk,28141
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+ monai/networks/nets/resnet.py,sha256=owsWu9lK26ijhRHDCLEBLf03t681TyehVCflcPqGIec,28179
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- monai/networks/nets/senet.py,sha256=gulqPMYmSABbMbN39NElGzSU1TKGviJas7EPTBaZ60A,19289
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+ monai/networks/nets/senet.py,sha256=yLhP9gDPoa-h9UwJZJm5qxPdPvF9calY95lButXJESs,19308
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- monai/networks/nets/swin_unetr.py,sha256=aY1GBvV8iPTvcwVDoDvvElbfDNlR_q9uk9_hjFr-0kM,45541
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+ monai/networks/nets/swin_unetr.py,sha256=cPbA_M_BmPa4ziA6lHZrLW1zOBI4HH7eLxKaOCbCbgM,45677
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- monai/networks/nets/transchex.py,sha256=uA_RfTDfPhwA1ecAPZ9EDnMyJKn2tUMLEWdyB_rU2v0,15726
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+ monai/networks/nets/transchex.py,sha256=5b8luTeajjbl3P560Y5xpwblT3j1-0ghuhmQbkIat0U,15822
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- monai/networks/nets/vista3d.py,sha256=jsQfEl_EzEmj0LCo8rs9wK9oOqN8Udisn5xZXAu6mRg,43314
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+ monai/networks/nets/vista3d.py,sha256=sm8h9qlmz7D08PWo1zd7Wu8pXqGV9WR1OEBb1O6-qUc,43496
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@@ -369,7 +369,7 @@ monai/transforms/croppad/batch.py,sha256=5ukcYk3VCDpk62AL5Q_jTqpXmSNTlw0UCUhDeAB
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- monai/transforms/intensity/array.py,sha256=CF3lVbcI4D-YmhifxGj1Mf32TwW4alK1WYBzFiejWbo,121791
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+ monai/transforms/intensity/array.py,sha256=jVHHMvmUTYrqIp6i_MhvLt_-fup_Bl770RRV7cald3g,121808
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@@ -394,7 +394,7 @@ monai/transforms/smooth_field/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6F
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- monai/transforms/spatial/array.py,sha256=5EKivdPYCP4i4qYUlkK1RpYQFzaU_baYyzgubid3jtM,184936
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+ monai/transforms/spatial/array.py,sha256=fEmwe1O1f0eTh_32OhkPfQQfafK2v-MwFA4G9dSdAxo,185104
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@@ -407,12 +407,12 @@ monai/utils/deprecate_utils.py,sha256=gKeEV4MsI51qeQ5gci2me_C-0e-tDwa3VZzd3XPQqL
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- monai/utils/misc.py,sha256=R-sCS5u7SA8hX6e7x6WSc8FgLcNpqKFRRDMWxUd2wCo,31759
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+ monai/utils/misc.py,sha256=j1w0AcuAAW_4MGuxiohi1pYsHfZpsZq5wLAz_kQKzD4,31759
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  monai/utils/nvtx.py,sha256=i9JBxR1uhW1ZCgLPLlTx8b907QlXkFzJyTBLMlFjhtU,6876
413
413
  monai/utils/ordering.py,sha256=0nlA5b5QpVCHbtiCbTC-YsqjTmjm0bub0IeJhGFBOes,8270
414
414
  monai/utils/profiling.py,sha256=V2_cSHgrcmVF48_G3nUi2-O6fnXsS89nSlb8jj58YLo,15937
415
- monai/utils/state_cacher.py,sha256=SCs0TWud_lR8fvDhZ0POaXLGLo1J3NALWkg0ODOwT7k,5982
415
+ monai/utils/state_cacher.py,sha256=M4fxe4aqOS6GTYt2nCiZIx1HRYmEtlWpXWbGcriwvuU,6002
416
416
  monai/utils/tf32.py,sha256=FA_Upq2evvWGl2UYdrEsd7GoIsIEsLyPfP9oD_su9Go,2643
417
417
  monai/utils/type_conversion.py,sha256=fj1mUWf-5WBv9m-fpe8gjcGljGBGSA8-RppBpKD_wv0,21754
418
418
  monai/visualize/__init__.py,sha256=p7dv9-hRa9vAhlpHyk86yap9HgeDeJRO3pXmFhDx8Mc,1038
@@ -503,7 +503,7 @@ tests/apps/vista3d/test_vista3d_sampler.py,sha256=-luQCe3Hhle2PC9AkFCUgK8gozOD0O
503
503
  tests/apps/vista3d/test_vista3d_transforms.py,sha256=nAPiDBNWeXLoW7ax3HHL63t5jqzQ3HFa-6wTvdyqVJk,3280
504
504
  tests/bundle/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
505
505
  tests/bundle/test_bundle_ckpt_export.py,sha256=VnpigCoBAAc2lo0rWOpVMg0IYGB6vbHXL8xLtB1Pkio,4622
506
- tests/bundle/test_bundle_download.py,sha256=4wpnCXNYTwTHWNjuSZqnXpVzadxNRabmFaFM3LZ_TJU,20072
506
+ tests/bundle/test_bundle_download.py,sha256=sM6bIaCjIdDbHWpMigYx4T7qFLXSeexnRpGubUKbx9U,20404
507
507
  tests/bundle/test_bundle_get_data.py,sha256=lQh321mev_7fsLXRg0Tq5uEjuQILethDHRKzB6VV0o4,3667
508
508
  tests/bundle/test_bundle_push_to_hf_hub.py,sha256=Zjl6xDwRKgkS6jvO5dzMBaTLEd4EXyMXp0_wzDNSY3g,1740
509
509
  tests/bundle/test_bundle_trt_export.py,sha256=png-2SGjBSt46LXSz-PLprOXwJ0WkC_3YLR3Ibk_WBc,6344
@@ -516,7 +516,7 @@ tests/bundle/test_config_item.py,sha256=tM6gNRE7q_jywig7OcHu2R4qrQySYRhx9PAqhoI7
516
516
  tests/bundle/test_config_parser.py,sha256=tP45BGOkt1uAkgMTCjnEP9tXyJVJjwI57DM-QM8iGg4,16131
517
517
  tests/bundle/test_reference_resolver.py,sha256=3skwzGtooAHi81KRrso9Bwv4fx4ddAPoSDA2MTWBsOg,4284
518
518
  tests/config/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
519
- tests/config/test_cv2_dist.py,sha256=mJKLdvfAS5DoanEaapDr3PIkAtuX4dLGzsMfvWSFQdU,1989
519
+ tests/config/test_cv2_dist.py,sha256=e8DCBCWHhLIhZQneEchwYPSavxsOEjTsoUxt9uT5Kps,1953
520
520
  tests/engines/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
521
521
  tests/engines/test_ensemble_evaluator.py,sha256=28hQGMswONlZSFT9dKN7kDnoBnRWiotDIJCNPp0irIc,3147
522
522
  tests/engines/test_prepare_batch_default.py,sha256=W0S-BXwoDbI_Tzjj7N0yEWX34TZfkI0f3MTnEfRLmqE,2814
@@ -587,14 +587,14 @@ tests/integration/test_deepedit_interaction.py,sha256=tmryp1cP_QlI_tgguZybRZc7-F
587
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  tests/integration/test_downsample_block.py,sha256=qvqSeTwFQHwiJ0y8uwWE8U_9ffhltJ_4U5Zg5rBnQ6M,1794
588
588
  tests/integration/test_hovernet_nuclear_type_post_processingd.py,sha256=yTRmYdQBXEMMmXJjPDBPMxPSkLWj2U3bdRhaAfDXrpE,2661
589
589
  tests/integration/test_integration_autorunner.py,sha256=tDK1XkMZp4hehfuzMr2LQIgavP36L_vkFcOcI1Z68Lk,7571
590
- tests/integration/test_integration_bundle_run.py,sha256=nl7R3kesgBIYkiI5ZqvUrz08Tdv_HBOT4-hEywZWRp0,10770
591
- tests/integration/test_integration_classification_2d.py,sha256=kiOI3LCOBVNg5JNaKrTl7f1kGyMZVq-J_--LafmSrSY,11354
590
+ tests/integration/test_integration_bundle_run.py,sha256=uO87WnnG3EYnAxhudpfHy7fyxHNNzifFTw2rrMm_6XU,10734
591
+ tests/integration/test_integration_classification_2d.py,sha256=psUvLWNtndkPkgc14YCKqvVQJ9oS1EBdxpg3dOqoF7E,11373
592
592
  tests/integration/test_integration_determinism.py,sha256=AiSBXHcPwDtKRbt_lejI-IDDkYtDWccMkNVoHuyrtU0,3172
593
- tests/integration/test_integration_fast_train.py,sha256=Q351H8MFHc3HJscfowIoY5CGnhNKNzzRVFvxnag1wYg,9742
593
+ tests/integration/test_integration_fast_train.py,sha256=WxEIJV52F0Cf2wmGlIQDiVs1m2QZrvxmta_UAsa0OCI,9736
594
594
  tests/integration/test_integration_gpu_customization.py,sha256=z-w6iBaY72LEi8TBVxZuzvsEBgBecZAP2YPwl6KFUhA,5547
595
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  tests/integration/test_integration_lazy_samples.py,sha256=d_4GNy_ixiizvehIYJBht4dQropRsqQy7rJOpW7OkZ8,9198
596
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  tests/integration/test_integration_nnunetv2_runner.py,sha256=KgyAI0Irl93KDLZyo8fGZjEL8dS5UXPKQz_osRfhtSU,4332
597
- tests/integration/test_integration_segmentation_3d.py,sha256=pl5FLQQ-vGtsd2ulfg2OCNz2KvoJ8inH_KqTcFBgBtM,13210
597
+ tests/integration/test_integration_segmentation_3d.py,sha256=TSV8tdiloK4_E03DgM1SqJxMo4fcH-Ta1NutG-3cPFc,13229
598
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  tests/integration/test_integration_sliding_window.py,sha256=N0CYquebXk8N3KiPcGWbD9KAf5UHuXx2pqAZY5PQVSE,3769
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  tests/integration/test_integration_stn.py,sha256=1bwzCn8X-1xjV-SGalOtlpRPLFnYpDGO_kxoWSe-itY,4946
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  tests/integration/test_integration_unet_2d.py,sha256=rMOCG7eYt3jrCjG5HXCfTdF-XnCvyO1X631H7l-F1w4,2376
@@ -657,7 +657,7 @@ tests/metrics/test_compute_generalized_dice.py,sha256=m5468hRvCYdfEF4B459e2LW3gD
657
657
  tests/metrics/test_compute_meandice.py,sha256=kC7JEqHUe54GrPxypoEjlmUZtxVZxjbhfRWEsZPP7CY,11381
658
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  tests/metrics/test_compute_meaniou.py,sha256=hphLbY6S-DA3CQiKOug-DblzqwPK0F7aF3Pujz6H0vk,8020
659
659
  tests/metrics/test_compute_mmd_metric.py,sha256=9rwvmZaj4wQKLY3xfuF85gFvZrnyWSXXDd6m7zy63sg,2025
660
- tests/metrics/test_compute_multiscalessim_metric.py,sha256=5Eqj84tm_pRoP_kpYE8sEOc_rz-fntV01t-3OXbOoNA,3086
660
+ tests/metrics/test_compute_multiscalessim_metric.py,sha256=bLL6eNE_bhL4tL4EJO5XcaGurbE5utemc4b6PmJ766k,3080
661
661
  tests/metrics/test_compute_panoptic_quality.py,sha256=DvHzBiaWmDEze3QONzJqxXhTgDv9Q-3_mKqaApaGMvk,5087
662
662
  tests/metrics/test_compute_regression_metrics.py,sha256=zEDCcnV-E4VXwyqAFfsbdYIYbtCXADEv0ipvp9ky81A,8135
663
663
  tests/metrics/test_compute_roc_auc.py,sha256=9pupbW1aLvCtpRZ0qhfPpBYZPqu3pT2Xiucou5j9GOA,4579
@@ -670,14 +670,14 @@ tests/metrics/test_label_quality_score.py,sha256=AT7A8cfr0wsrAZ-li2cAWNiO2SS0BIr
670
670
  tests/metrics/test_loss_metric.py,sha256=S0ZEGdKRg4df5vcXqxNj0XVelml_ogdNCaS8E82Okl8,2106
671
671
  tests/metrics/test_metrics_reloaded.py,sha256=U8KRl3B369npmcFgzcSxXi4bDotVDR9o9ubOM5iJ598,4654
672
672
  tests/metrics/test_ssim_metric.py,sha256=DHPWky52kWVdCHXmoEFkKMlyWMm4XOqXQLNzv0sg4Lc,2896
673
- tests/metrics/test_surface_dice.py,sha256=CGCQt-ydMzaT2q1fFnzpKb6E-TPydym4vE_kdpeWYyE,21769
673
+ tests/metrics/test_surface_dice.py,sha256=tsHUP91hn2jw_KGZp8QePFQ8os-9ixypgJ-1fbdi43o,21760
674
674
  tests/metrics/test_surface_distance.py,sha256=gkW0dai3vHjXubLNBilqFnV5Up-abSMgQ53v0iCTVeE,6237
675
675
  tests/networks/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
676
676
  tests/networks/test_bundle_onnx_export.py,sha256=_lEnAJhq7D2IOuVEdgBVsA8vySgs34FkfMrvNsCLfUg,2853
677
677
  tests/networks/test_convert_to_onnx.py,sha256=h1Sjb0SZmiwwbx0_PrzeFDOE3-JRSp18qDS6G_PdD6g,3673
678
678
  tests/networks/test_convert_to_torchscript.py,sha256=NhrJMCfQtC0sftrhDjL28omS7VKzg_niRK0KtY5Mr_A,1636
679
679
  tests/networks/test_convert_to_trt.py,sha256=5TkuUvCPgW5mAvYUysRRrSjtSbDoDDAoJb2kJtuXOVk,2656
680
- tests/networks/test_save_state.py,sha256=_glX4irpJVqk2jnOJaVqYxsOQNX3oCauxlEXe2ly8Cg,2354
680
+ tests/networks/test_save_state.py,sha256=OnUJEX6vqWoIAIEvVXHbAL4Yrv1GeY0YHw2DposmS3k,2373
681
681
  tests/networks/test_to_onehot.py,sha256=QlT6RkkG7CJeh0gppSohl4kb0bmhISdx_19IybYES0Q,2224
682
682
  tests/networks/test_varnet.py,sha256=-9Ew5epHVvRLc34VCFwKNpsKKoAdudpBRlqDAShpIio,2800
683
683
  tests/networks/blocks/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
@@ -745,15 +745,15 @@ tests/networks/nets/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZL
745
745
  tests/networks/nets/test_ahnet.py,sha256=1pLU9g1dAYByA14r46CgcEj4Bs_nGkuCESojA4b3ghQ,8348
746
746
  tests/networks/nets/test_attentionunet.py,sha256=AUdp94j6un9sg35Q0GPNINo4HhXizUT8QBJDKTqK1pA,3376
747
747
  tests/networks/nets/test_autoencoder.py,sha256=LrYSDtlFUyNe23JT6sULuAr-3cDukqTPEJ7KbNU_2Q4,2964
748
- tests/networks/nets/test_autoencoderkl.py,sha256=c6kGqB9f8AL-PjnumisDSg0gEGauRu9ceO4SzWV4rY0,12152
748
+ tests/networks/nets/test_autoencoderkl.py,sha256=cohtIQshgBPaUwjVozxbSFRi60N2wK_cCkVJJcd4YTU,12171
749
749
  tests/networks/nets/test_basic_unet.py,sha256=3261vqW_CjwDKi4lEGQ-KoMfcszWzo_01EDvYh0bKz8,3337
750
750
  tests/networks/nets/test_basic_unetplusplus.py,sha256=2skwJyzZ34N_iCCmU-waKUZFojfS1GsY08NT8PJrvcU,3712
751
751
  tests/networks/nets/test_bundle_init_bundle.py,sha256=hQGXchLGk6wvT1rUirRS7ToPDSBAvK7FvsnaNNe8NHw,1934
752
752
  tests/networks/nets/test_cell_sam_wrapper.py,sha256=4tW0tcxtpdWgPQ_boVW_68-SMatcJ8-OA6vy4ebXIR0,2215
753
- tests/networks/nets/test_controlnet.py,sha256=JZvfEV9akiPcmFklWBi9GHKlc3EkCVS1cZy0KGuojI8,7354
753
+ tests/networks/nets/test_controlnet.py,sha256=opJhley8-CAFko3uOQGI0IFETwsjt17wXalGJS9O5oU,7373
754
754
  tests/networks/nets/test_daf3d.py,sha256=Ko58wtl8im1makMEHPDIMWyJV5aOoRaGDPMUlL0vM9s,2331
755
755
  tests/networks/nets/test_densenet.py,sha256=t5QsIN_hiirm9p3zEEGvgN928N0WN14bjbWD4B9M6pU,4439
756
- tests/networks/nets/test_diffusion_model_unet.py,sha256=H0qWcxgCNOcmjUWWlwwZFuYsmwSm_dz339EjTMMfogI,18912
756
+ tests/networks/nets/test_diffusion_model_unet.py,sha256=mCgCdT-j42pnnoTb-Tyy9yCEiwYaV5K0nygxXwgWf-0,18931
757
757
  tests/networks/nets/test_dints_network.py,sha256=pdoK8663ga8UgafbavWy14XdCwzaYrbU90eerleAHT8,5785
758
758
  tests/networks/nets/test_discriminator.py,sha256=gsw3qCTCHzjPoX_ylhYbhQ-tNY5emg2xUJLeweZV-2I,1916
759
759
  tests/networks/nets/test_dynunet.py,sha256=bdpTk0O-4ionxgFZgfjhvP-R6XEGGYQDihst6H79pHw,7406
@@ -767,7 +767,7 @@ tests/networks/nets/test_hovernet.py,sha256=Ad6z1k5Ef-Xms14TFeF14LnyTv4_lxOJWZtH
767
767
  tests/networks/nets/test_mednext.py,sha256=RxcZeKErrp7yrtU2rYU8yo0_jlbqa-_ZXDx0xqDfBLI,4715
768
768
  tests/networks/nets/test_milmodel.py,sha256=3n1vZs7YXGuSxH_x3vtk3HwElzz85pBrAUQjhQ_K06E,3233
769
769
  tests/networks/nets/test_net_adapter.py,sha256=r-VQTK18Tx1km8_mVNENaVKmLbbZ_Zax07ZNUo1GZAA,2641
770
- tests/networks/nets/test_network_consistency.py,sha256=2QRjf5n6_OdGD8pgUqrDB-Bk_d8RsOQSc_VsMJzTCrs,2867
770
+ tests/networks/nets/test_network_consistency.py,sha256=OuEsjkCzQEIxQ9CNJxNXqI8KrW4XNALQRvKeNDOAPvU,2886
771
771
  tests/networks/nets/test_patch_gan_dicriminator.py,sha256=5qhzL55pid_9ShuALPzvW21eZtdlpKupw8hdu1N4sVE,5266
772
772
  tests/networks/nets/test_quicknat.py,sha256=iuJRChBt6OoOvBGUe2bZ5wvcx0AfId4gZJ7K12SP7w8,2601
773
773
  tests/networks/nets/test_resnet.py,sha256=nIx9ZrHWN36iiGP9KffiEdJ5kLctySh5_zdAddl9gTc,10475
@@ -777,10 +777,10 @@ tests/networks/nets/test_senet.py,sha256=V9HyDyYMR2r2F6FzZUl6INDipH5mk-IrExkkeZw
777
777
  tests/networks/nets/test_spade_autoencoderkl.py,sha256=vU9j-flnprLJT-VctKuiLK1KyKw1UrAO87mpddE0sNs,9289
778
778
  tests/networks/nets/test_spade_diffusion_model_unet.py,sha256=LEN1PAGid0DMdP2NySi94RrlE8FgomJ9ZV3YRe0ubaE,18347
779
779
  tests/networks/nets/test_spade_vaegan.py,sha256=ur1SPoXEmpr_8KwVS6-E_1tIPMBKpNqsvHJ7z5-obzA,5632
780
- tests/networks/nets/test_swin_unetr.py,sha256=HpRTEoeErZrzMAPSH8_RLfXfQvn25SflOXQGhuC7Vpg,5671
780
+ tests/networks/nets/test_swin_unetr.py,sha256=gj1Jqg8xTBYdCZWCR4Y9_ZlGNNYVTkCPmB2sdF2xIDM,5690
781
781
  tests/networks/nets/test_torchvision_fc_model.py,sha256=oNb-PaOhIAjOrpnsXApC2hKSUK6lMutIEinMrCOKQoA,6397
782
782
  tests/networks/nets/test_transchex.py,sha256=vUUsCd_CJrW_q0jcaGQegBoanJQVoufrs_EP3MC46Xo,3220
783
- tests/networks/nets/test_transformer.py,sha256=_Aw-bQXIO-t_myfHwt6FmPeHMKUi99CgkJePVcUcvZ8,4199
783
+ tests/networks/nets/test_transformer.py,sha256=rsGjemv0JV9SMTTWiZ8Sz_w5t5Rkz15b2rjJit4R2XA,4218
784
784
  tests/networks/nets/test_unet.py,sha256=wXwaXkufYDjFXzQ-AygbePAwigZLLaY58sGygizF3Q4,5801
785
785
  tests/networks/nets/test_unetr.py,sha256=3_V4VWfsQVB22-T8XTSRra3Her2XrLx5gzIRHis2zPs,5325
786
786
  tests/networks/nets/test_varautoencoder.py,sha256=wk9ra-X0ri03ZZ_YyoyhPb90z6WpiOcTi1SztLl3ytg,3547
@@ -1178,8 +1178,8 @@ tests/visualize/test_vis_gradcam.py,sha256=WpA-pvTB75eZs7JoIc5qyvOV9PwgkzWI8-Vow
1178
1178
  tests/visualize/utils/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
1179
1179
  tests/visualize/utils/test_blend_images.py,sha256=RVs2p_8RWQDfhLHDNNtZaMig27v8o0km7XxNa-zWjKE,2274
1180
1180
  tests/visualize/utils/test_matshow3d.py,sha256=wXYj77L5Jvnp0f6DvL1rsi_-YlCxS0HJ9hiPmrbpuP8,5021
1181
- monai_weekly-1.5.dev2509.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
1182
- monai_weekly-1.5.dev2509.dist-info/METADATA,sha256=h7L3w9XhzSfoxC5yRoqgKS_NeECPEORKyEX4E1WS6Vc,11909
1183
- monai_weekly-1.5.dev2509.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
1184
- monai_weekly-1.5.dev2509.dist-info/top_level.txt,sha256=hn2Y6P9xBf2R8faMeVMHhPMvrdDKxMsIOwMDYI0yTjs,12
1185
- monai_weekly-1.5.dev2509.dist-info/RECORD,,
1181
+ monai_weekly-1.5.dev2510.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
1182
+ monai_weekly-1.5.dev2510.dist-info/METADATA,sha256=EwQi6m9OMtupNit5BbaClOKoMMq6u_NN4SYRQ3LaHIU,11986
1183
+ monai_weekly-1.5.dev2510.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
1184
+ monai_weekly-1.5.dev2510.dist-info/top_level.txt,sha256=hn2Y6P9xBf2R8faMeVMHhPMvrdDKxMsIOwMDYI0yTjs,12
1185
+ monai_weekly-1.5.dev2510.dist-info/RECORD,,
@@ -266,6 +266,7 @@ class TestLoad(unittest.TestCase):
266
266
  with skip_if_downloading_fails():
267
267
  # download bundle, and load weights from the downloaded path
268
268
  with tempfile.TemporaryDirectory() as tempdir:
269
+ bundle_root = os.path.join(tempdir, bundle_name)
269
270
  # load weights
270
271
  weights = load(
271
272
  name=bundle_name,
@@ -278,7 +279,7 @@ class TestLoad(unittest.TestCase):
278
279
  return_state_dict=True,
279
280
  )
280
281
  # prepare network
281
- with open(os.path.join(tempdir, bundle_name, bundle_files[2])) as f:
282
+ with open(os.path.join(bundle_root, bundle_files[2])) as f:
282
283
  net_args = json.load(f)["network_def"]
283
284
  model_name = net_args["_target_"]
284
285
  del net_args["_target_"]
@@ -288,9 +289,13 @@ class TestLoad(unittest.TestCase):
288
289
  model.eval()
289
290
 
290
291
  # prepare data and test
291
- input_tensor = torch.load(os.path.join(tempdir, bundle_name, bundle_files[4]), map_location=device)
292
+ input_tensor = torch.load(
293
+ os.path.join(bundle_root, bundle_files[4]), map_location=device, weights_only=True
294
+ )
292
295
  output = model.forward(input_tensor)
293
- expected_output = torch.load(os.path.join(tempdir, bundle_name, bundle_files[3]), map_location=device)
296
+ expected_output = torch.load(
297
+ os.path.join(bundle_root, bundle_files[3]), map_location=device, weights_only=True
298
+ )
294
299
  assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
295
300
 
296
301
  # load instantiated model directly and test, since the bundle has been downloaded,
@@ -350,7 +355,7 @@ class TestLoad(unittest.TestCase):
350
355
  config_file=f"{tempdir}/spleen_ct_segmentation/configs/train.json", workflow_type="train"
351
356
  )
352
357
  expected_model = workflow.network_def.to(device)
353
- expected_model.load_state_dict(torch.load(model_path))
358
+ expected_model.load_state_dict(torch.load(model_path, weights_only=True))
354
359
  expected_output = expected_model(input_tensor)
355
360
  assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
356
361
 
@@ -378,6 +383,7 @@ class TestLoad(unittest.TestCase):
378
383
  with skip_if_downloading_fails():
379
384
  # load ts module
380
385
  with tempfile.TemporaryDirectory() as tempdir:
386
+ bundle_root = os.path.join(tempdir, bundle_name)
381
387
  # load ts module
382
388
  model_ts, metadata, extra_file_dict = load(
383
389
  name=bundle_name,
@@ -393,9 +399,13 @@ class TestLoad(unittest.TestCase):
393
399
  )
394
400
 
395
401
  # prepare and test ts
396
- input_tensor = torch.load(os.path.join(tempdir, bundle_name, bundle_files[1]), map_location=device)
402
+ input_tensor = torch.load(
403
+ os.path.join(bundle_root, bundle_files[1]), map_location=device, weights_only=True
404
+ )
397
405
  output = model_ts.forward(input_tensor)
398
- expected_output = torch.load(os.path.join(tempdir, bundle_name, bundle_files[0]), map_location=device)
406
+ expected_output = torch.load(
407
+ os.path.join(bundle_root, bundle_files[0]), map_location=device, weights_only=True
408
+ )
399
409
  assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
400
410
  # test metadata
401
411
  self.assertTrue(metadata["pytorch_version"] == "1.7.1")
@@ -16,7 +16,6 @@ import unittest
16
16
  import numpy as np
17
17
  import torch
18
18
  import torch.distributed as dist
19
- from torch.cuda.amp import autocast
20
19
 
21
20
  # FIXME: test for the workaround of https://github.com/Project-MONAI/MONAI/issues/5291
22
21
  from monai.config.deviceconfig import print_config
@@ -33,7 +32,7 @@ def main_worker(rank, ngpus_per_node, port):
33
32
  model, device_ids=[rank], output_device=rank, find_unused_parameters=False
34
33
  )
35
34
  x = torch.ones(1, 1, 12, 12, 12).to(rank)
36
- with autocast(enabled=True):
35
+ with torch.autocast("cuda"):
37
36
  model(x)
38
37
 
39
38
  if dist.is_initialized():
@@ -76,8 +76,7 @@ class TestBundleRun(unittest.TestCase):
76
76
  )
77
77
  with open(meta_file, "w") as f:
78
78
  json.dump(
79
- {"version": "0.1.0", "monai_version": "1.1.0", "pytorch_version": "1.13.1", "numpy_version": "1.22.2"},
80
- f,
79
+ {"version": "0.1.0", "monai_version": "1.1.0", "pytorch_version": "2.3.0", "numpy_version": "1.22.2"}, f
81
80
  )
82
81
  cmd = ["coverage", "run", "-m", "monai.bundle"]
83
82
  # test both CLI entry "run" and "run_workflow"
@@ -114,8 +113,7 @@ class TestBundleRun(unittest.TestCase):
114
113
  )
115
114
  with open(meta_file, "w") as f:
116
115
  json.dump(
117
- {"version": "0.1.0", "monai_version": "1.1.0", "pytorch_version": "1.13.1", "numpy_version": "1.22.2"},
118
- f,
116
+ {"version": "0.1.0", "monai_version": "1.1.0", "pytorch_version": "2.3.0", "numpy_version": "1.22.2"}, f
119
117
  )
120
118
 
121
119
  os.mkdir(scripts_dir)
@@ -166,7 +166,7 @@ def run_inference_test(root_dir, test_x, test_y, device="cuda:0", num_workers=10
166
166
  model = DenseNet121(spatial_dims=2, in_channels=1, out_channels=len(np.unique(test_y))).to(device)
167
167
 
168
168
  model_filename = os.path.join(root_dir, "best_metric_model.pth")
169
- model.load_state_dict(torch.load(model_filename))
169
+ model.load_state_dict(torch.load(model_filename, weights_only=True))
170
170
  y_true = []
171
171
  y_pred = []
172
172
  with eval_mode(model):
@@ -186,7 +186,7 @@ class IntegrationFastTrain(DistTestCase):
186
186
  step += 1
187
187
  optimizer.zero_grad()
188
188
  # set AMP for training
189
- with torch.cuda.amp.autocast():
189
+ with torch.autocast("cuda"):
190
190
  outputs = model(batch_data["image"])
191
191
  loss = loss_function(outputs, batch_data["label"])
192
192
  scaler.scale(loss).backward()
@@ -207,7 +207,7 @@ class IntegrationFastTrain(DistTestCase):
207
207
  roi_size = (96, 96, 96)
208
208
  sw_batch_size = 4
209
209
  # set AMP for validation
210
- with torch.cuda.amp.autocast():
210
+ with torch.autocast("cuda"):
211
211
  val_outputs = sliding_window_inference(val_data["image"], roi_size, sw_batch_size, model)
212
212
 
213
213
  val_outputs = [post_pred(i) for i in decollate_batch(val_outputs)]
@@ -216,7 +216,7 @@ def run_inference_test(root_dir, device="cuda:0"):
216
216
  ).to(device)
217
217
 
218
218
  model_filename = os.path.join(root_dir, "best_metric_model.pth")
219
- model.load_state_dict(torch.load(model_filename))
219
+ model.load_state_dict(torch.load(model_filename, weights_only=True))
220
220
  with eval_mode(model):
221
221
  # resampling with align_corners=True or dtype=float64 will generate
222
222
  # slight different results between PyTorch 1.5 an 1.6
@@ -32,7 +32,7 @@ class TestMultiScaleSSIMMetric(unittest.TestCase):
32
32
  metric(preds, target)
33
33
  result = metric.aggregate()
34
34
  expected_value = 0.023176
35
- self.assertTrue(expected_value - result.item() < 0.000001)
35
+ self.assertAlmostEqual(expected_value, result.item(), 4)
36
36
 
37
37
  def test2d_uniform(self):
38
38
  set_determinism(0)
@@ -45,7 +45,7 @@ class TestMultiScaleSSIMMetric(unittest.TestCase):
45
45
  metric(preds, target)
46
46
  result = metric.aggregate()
47
47
  expected_value = 0.022655
48
- self.assertTrue(expected_value - result.item() < 0.000001)
48
+ self.assertAlmostEqual(expected_value, result.item(), 4)
49
49
 
50
50
  def test3d_gaussian(self):
51
51
  set_determinism(0)
@@ -58,7 +58,7 @@ class TestMultiScaleSSIMMetric(unittest.TestCase):
58
58
  metric(preds, target)
59
59
  result = metric.aggregate()
60
60
  expected_value = 0.061796
61
- self.assertTrue(expected_value - result.item() < 0.000001)
61
+ self.assertAlmostEqual(expected_value, result.item(), 4)
62
62
 
63
63
  def input_ill_input_shape2d(self):
64
64
  metric = MultiScaleSSIMMetric(spatial_dims=3, weights=[0.5, 0.5])
@@ -82,7 +82,7 @@ class TestAllSurfaceDiceMetrics(unittest.TestCase):
82
82
  expected_res0[1, 1] = np.nan
83
83
  for b, c in np.ndindex(batch_size, n_class):
84
84
  np.testing.assert_allclose(expected_res0[b, c], res0[b, c].cpu())
85
- np.testing.assert_array_equal(agg0.cpu(), np.nanmean(np.nanmean(expected_res0, axis=1), axis=0))
85
+ np.testing.assert_allclose(agg0.cpu(), np.nanmean(np.nanmean(expected_res0, axis=1), axis=0))
86
86
  np.testing.assert_equal(not_nans.cpu(), torch.tensor(2))
87
87
 
88
88
  def test_tolerance_euclidean_distance(self):
@@ -126,7 +126,7 @@ class TestAllSurfaceDiceMetrics(unittest.TestCase):
126
126
  expected_res0[1, 1] = np.nan
127
127
  for b, c in np.ndindex(batch_size, n_class):
128
128
  np.testing.assert_allclose(expected_res0[b, c], res0[b, c].cpu())
129
- np.testing.assert_array_equal(agg0.cpu(), np.nanmean(np.nanmean(expected_res0, axis=1), axis=0))
129
+ np.testing.assert_allclose(agg0.cpu(), np.nanmean(np.nanmean(expected_res0, axis=1), axis=0))
130
130
  np.testing.assert_equal(not_nans.cpu(), torch.tensor(2))
131
131
 
132
132
  def test_tolerance_euclidean_distance_3d(self):
@@ -173,7 +173,7 @@ class TestAllSurfaceDiceMetrics(unittest.TestCase):
173
173
  expected_res0[1, 1] = np.nan
174
174
  for b, c in np.ndindex(batch_size, n_class):
175
175
  np.testing.assert_allclose(expected_res0[b, c], res0[b, c].cpu())
176
- np.testing.assert_array_equal(agg0.cpu(), np.nanmean(np.nanmean(expected_res0, axis=1), axis=0))
176
+ np.testing.assert_allclose(agg0.cpu(), np.nanmean(np.nanmean(expected_res0, axis=1), axis=0))
177
177
  np.testing.assert_equal(not_nans.cpu(), torch.tensor(2))
178
178
 
179
179
  def test_tolerance_all_distances(self):
@@ -330,7 +330,7 @@ class TestAutoEncoderKL(unittest.TestCase):
330
330
  weight_path = os.path.join(tmpdir, filename)
331
331
  download_url(url=url, filepath=weight_path, hash_val=hash_val, hash_type=hash_type)
332
332
 
333
- net.load_old_state_dict(torch.load(weight_path), verbose=False)
333
+ net.load_old_state_dict(torch.load(weight_path, weights_only=True), verbose=False)
334
334
 
335
335
 
336
336
  if __name__ == "__main__":
@@ -208,7 +208,7 @@ class TestControlNet(unittest.TestCase):
208
208
  weight_path = os.path.join(tmpdir, filename)
209
209
  download_url(url=url, filepath=weight_path, hash_val=hash_val, hash_type=hash_type)
210
210
 
211
- net.load_old_state_dict(torch.load(weight_path), verbose=False)
211
+ net.load_old_state_dict(torch.load(weight_path, weights_only=True), verbose=False)
212
212
 
213
213
 
214
214
  if __name__ == "__main__":
@@ -578,7 +578,7 @@ class TestDiffusionModelUNet3D(unittest.TestCase):
578
578
  weight_path = os.path.join(tmpdir, filename)
579
579
  download_url(url=url, filepath=weight_path, hash_val=hash_val, hash_type=hash_type)
580
580
 
581
- net.load_old_state_dict(torch.load(weight_path), verbose=False)
581
+ net.load_old_state_dict(torch.load(weight_path, weights_only=True), verbose=False)
582
582
 
583
583
 
584
584
  if __name__ == "__main__":