monai-weekly 1.4.dev2429__py3-none-any.whl → 1.4.dev2431__py3-none-any.whl

monai/__init__.py

@@ -93,4 +93,4 @@ except BaseException:
 
     if MONAIEnvVars.debug():
         raise
-__commit_id__ = "d020facccbd3afe979fce68c24703dcda47234f6"
+__commit_id__ = "56ee32e36c5c0c7a5cb10afa4ec5589c81171e6b"

monai/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2024-07-21T02:18:43+0000",
+ "date": "2024-08-04T02:19:41+0000",
  "dirty": false,
  "error": null,
- "full-revisionid": "023827f344ab6236402ad609f0e938c308f68ca0",
- "version": "1.4.dev2429"
+ "full-revisionid": "951a77d7a7737a3108afa94623a50b87d21eb4a7",
+ "version": "1.4.dev2431"
 }
 '''  # END VERSION_JSON
 

monai/apps/auto3dseg/hpo_gen.py

@@ -53,7 +53,7 @@ class HPOGen(AlgoGen):
         raise NotImplementedError
 
     @abstractmethod
-    def set_score(self):
+    def set_score(self, *args, **kwargs):
         """Report the evaluated results to HPO."""
         raise NotImplementedError
 

monai/apps/pathology/transforms/post/array.py

@@ -28,7 +28,7 @@ from monai.transforms import (
     SobelGradients,
 )
 from monai.transforms.transform import Transform
-from monai.transforms.utils_pytorch_numpy_unification import max, maximum, min, sum, unique
+from monai.transforms.utils_pytorch_numpy_unification import max, maximum, min, sum, unique, where
 from monai.utils import TransformBackends, convert_to_numpy, optional_import
 from monai.utils.misc import ensure_tuple_rep
 from monai.utils.type_conversion import convert_to_dst_type, convert_to_tensor
@@ -162,7 +162,8 @@ class GenerateWatershedMask(Transform):
         pred = label(pred)[0]
         if self.remove_small_objects is not None:
             pred = self.remove_small_objects(pred)
-        pred[pred > 0] = 1
+        pred_indices = np.where(pred > 0)
+        pred[pred_indices] = 1
 
         return convert_to_dst_type(pred, prob_map, dtype=self.dtype)[0]
 
@@ -338,7 +339,8 @@ class GenerateWatershedMarkers(Transform):
         instance_border = instance_border >= self.threshold  # uncertain area
 
         marker = mask - convert_to_dst_type(instance_border, mask)[0]  # certain foreground
-        marker[marker < 0] = 0
+        marker_indices = where(marker < 0)
+        marker[marker_indices] = 0  # type: ignore[index]
         marker = self.postprocess_fn(marker)
         marker = convert_to_numpy(marker)
 
@@ -635,7 +637,7 @@ class GenerateInstanceType(Transform):
 
         seg_map_crop = convert_to_dst_type(seg_map_crop == instance_id, type_map_crop, dtype=bool)[0]
 
-        inst_type = type_map_crop[seg_map_crop]
+        inst_type = type_map_crop[seg_map_crop]  # type: ignore[index]
         type_list, type_pixels = unique(inst_type, return_counts=True)
         type_list = list(zip(type_list, type_pixels))
         type_list = sorted(type_list, key=lambda x: x[1], reverse=True)

monai/auto3dseg/analyzer.py

@@ -470,7 +470,7 @@ class LabelStats(Analyzer):
 
         unique_label = unique(ndas_label)
         if isinstance(ndas_label, (MetaTensor, torch.Tensor)):
-            unique_label = unique_label.data.cpu().numpy()
+            unique_label = unique_label.data.cpu().numpy()  # type: ignore[assignment]
 
         unique_label = unique_label.astype(np.int16).tolist()
 

monai/bundle/config_parser.py

@@ -118,7 +118,7 @@ class ConfigParser:
         self.ref_resolver = ReferenceResolver()
         if config is None:
             config = {self.meta_key: {}}
-        self.set(config=config)
+        self.set(config=self.ref_resolver.normalize_meta_id(config))
 
     def __repr__(self):
         return f"{self.config}"
@@ -221,7 +221,7 @@ class ConfigParser:
                 if isinstance(conf_, dict) and k not in conf_:
                     conf_[k] = {}
                 conf_ = conf_[k if isinstance(conf_, dict) else int(k)]
-        self[ReferenceResolver.normalize_id(id)] = config
+        self[ReferenceResolver.normalize_id(id)] = self.ref_resolver.normalize_meta_id(config)
 
     def update(self, pairs: dict[str, Any]) -> None:
         """

monai/bundle/reference_resolver.py

@@ -17,7 +17,7 @@ from collections.abc import Sequence
 from typing import Any, Iterator
 
 from monai.bundle.config_item import ConfigComponent, ConfigExpression, ConfigItem
-from monai.bundle.utils import ID_REF_KEY, ID_SEP_KEY
+from monai.bundle.utils import DEPRECATED_ID_MAPPING, ID_REF_KEY, ID_SEP_KEY
 from monai.utils import allow_missing_reference, look_up_option
 
 __all__ = ["ReferenceResolver"]
@@ -202,6 +202,23 @@ class ReferenceResolver:
         """
         return str(id).replace("#", cls.sep)  # backward compatibility `#` is the old separator
 
+    def normalize_meta_id(self, config: Any) -> Any:
+        """
+        Update deprecated identifiers in `config` using `DEPRECATED_ID_MAPPING`.
+        This will replace names that are marked as deprecated with their replacement.
+
+        Args:
+            config: input config to be updated.
+        """
+        if isinstance(config, dict):
+            for _id, _new_id in DEPRECATED_ID_MAPPING.items():
+                if _id in config.keys():
+                    warnings.warn(
+                        f"Detected deprecated name '{_id}' in configuration file, replacing with '{_new_id}'."
+                    )
+                    config[_new_id] = config.pop(_id)
+        return config
+
     @classmethod
     def split_id(cls, id: str | int, last: bool = False) -> list[str]:
         """

monai/bundle/scripts.py

@@ -27,7 +27,7 @@ from typing import Any, Callable
 import torch
 from torch.cuda import is_available
 
-from monai.apps.mmars.mmars import _get_all_ngc_models
+from monai._version import get_versions
 from monai.apps.utils import _basename, download_url, extractall, get_logger
 from monai.bundle.config_item import ConfigComponent
 from monai.bundle.config_parser import ConfigParser
@@ -67,6 +67,9 @@ logger = get_logger(module_name=__name__)
 DEFAULT_DOWNLOAD_SOURCE = os.environ.get("BUNDLE_DOWNLOAD_SRC", "monaihosting")
 PPRINT_CONFIG_N = 5
 
+MONAI_HOSTING_BASE_URL = "https://api.ngc.nvidia.com/v2/models/nvidia/monaihosting"
+NGC_BASE_URL = "https://api.ngc.nvidia.com/v2/models/nvidia/monaitoolkit"
+
 
 def update_kwargs(args: str | dict | None = None, ignore_none: bool = True, **kwargs: Any) -> dict:
     """
@@ -169,16 +172,19 @@ def _get_git_release_url(repo_owner: str, repo_name: str, tag_name: str, filenam
 
 
 def _get_ngc_bundle_url(model_name: str, version: str) -> str:
-    return f"https://api.ngc.nvidia.com/v2/models/nvidia/monaitoolkit/{model_name.lower()}/versions/{version}/zip"
+    return f"{NGC_BASE_URL}/{model_name.lower()}/versions/{version}/zip"
+
+
+def _get_ngc_private_base_url(repo: str) -> str:
+    return f"https://api.ngc.nvidia.com/v2/{repo}/models"
 
 
 def _get_ngc_private_bundle_url(model_name: str, version: str, repo: str) -> str:
-    return f"https://api.ngc.nvidia.com/v2/{repo}/models/{model_name.lower()}/versions/{version}/zip"
+    return f"{_get_ngc_private_base_url(repo)}/{model_name.lower()}/versions/{version}/zip"
 
 
 def _get_monaihosting_bundle_url(model_name: str, version: str) -> str:
-    monaihosting_root_path = "https://api.ngc.nvidia.com/v2/models/nvidia/monaihosting"
-    return f"{monaihosting_root_path}/{model_name.lower()}/versions/{version}/files/{model_name}_v{version}.zip"
+    return f"{MONAI_HOSTING_BASE_URL}/{model_name.lower()}/versions/{version}/files/{model_name}_v{version}.zip"
 
 
 def _download_from_github(repo: str, download_path: Path, filename: str, progress: bool = True) -> None:
@@ -211,10 +217,15 @@ def _remove_ngc_prefix(name: str, prefix: str = "monai_") -> str:
 
 
 def _download_from_ngc(
-    download_path: Path, filename: str, version: str, remove_prefix: str | None, progress: bool
+    download_path: Path,
+    filename: str,
+    version: str,
+    prefix: str = "monai_",
+    remove_prefix: str | None = "monai_",
+    progress: bool = True,
 ) -> None:
     # ensure prefix is contained
-    filename = _add_ngc_prefix(filename)
+    filename = _add_ngc_prefix(filename, prefix=prefix)
     url = _get_ngc_bundle_url(model_name=filename, version=version)
     filepath = download_path / f"{filename}_v{version}.zip"
     if remove_prefix:
@@ -225,10 +236,16 @@ def _download_from_ngc(
 
 
 def _download_from_ngc_private(
-    download_path: Path, filename: str, version: str, remove_prefix: str | None, repo: str, headers: dict | None = None
+    download_path: Path,
+    filename: str,
+    version: str,
+    repo: str,
+    prefix: str = "monai_",
+    remove_prefix: str | None = "monai_",
+    headers: dict | None = None,
 ) -> None:
     # ensure prefix is contained
-    filename = _add_ngc_prefix(filename)
+    filename = _add_ngc_prefix(filename, prefix=prefix)
     request_url = _get_ngc_private_bundle_url(model_name=filename, version=version, repo=repo)
     if has_requests:
         headers = {} if headers is None else headers
@@ -267,8 +284,7 @@ def _get_ngc_token(api_key, retry=0):
 
 
 def _get_latest_bundle_version_monaihosting(name):
-    url = "https://api.ngc.nvidia.com/v2/models/nvidia/monaihosting"
-    full_url = f"{url}/{name.lower()}"
+    full_url = f"{MONAI_HOSTING_BASE_URL}/{name.lower()}"
     requests_get, has_requests = optional_import("requests", name="get")
     if has_requests:
         resp = requests_get(full_url)
@@ -279,18 +295,100 @@ def _get_latest_bundle_version_monaihosting(name):
     return model_info["model"]["latestVersionIdStr"]
 
 
-def _get_latest_bundle_version_private_registry(name, repo, headers=None):
-    url = f"https://api.ngc.nvidia.com/v2/{repo}/models"
-    full_url = f"{url}/{name.lower()}"
-    requests_get, has_requests = optional_import("requests", name="get")
-    if has_requests:
-        headers = {} if headers is None else headers
-        resp = requests_get(full_url, headers=headers)
-        resp.raise_for_status()
-    else:
-        raise ValueError("NGC API requires requests package. Please install it.")
+def _examine_monai_version(monai_version: str) -> tuple[bool, str]:
+    """Examine if the package version is compatible with the MONAI version in the metadata."""
+    version_dict = get_versions()
+    package_version = version_dict.get("version", "0+unknown")
+    if package_version == "0+unknown":
+        return False, "Package version is not available. Skipping version check."
+    if monai_version == "0+unknown":
+        return False, "MONAI version is not specified in the bundle. Skipping version check."
+    # treat rc versions as the same as the release version
+    package_version = re.sub(r"rc\d.*", "", package_version)
+    monai_version = re.sub(r"rc\d.*", "", monai_version)
+    if package_version < monai_version:
+        return (
+            False,
+            f"Your MONAI version is {package_version}, but the bundle is built on MONAI version {monai_version}.",
+        )
+    return True, ""
+
+
+def _check_monai_version(bundle_dir: PathLike, name: str) -> None:
+    """Get the `monai_version` from the metadata.json and compare if it is smaller than the installed `monai` package version"""
+    metadata_file = Path(bundle_dir) / name / "configs" / "metadata.json"
+    if not metadata_file.exists():
+        logger.warning(f"metadata file not found in {metadata_file}.")
+        return
+    with open(metadata_file) as f:
+        metadata = json.load(f)
+    is_compatible, msg = _examine_monai_version(metadata.get("monai_version", "0+unknown"))
+    if not is_compatible:
+        logger.warning(msg)
+
+
+def _list_latest_versions(data: dict, max_versions: int = 3) -> list[str]:
+    """
+    Extract the latest versions from the data dictionary.
+
+    Args:
+        data: the data dictionary.
+        max_versions: the maximum number of versions to return.
+
+    Returns:
+        versions of the latest models in the reverse order of creation date, e.g. ['1.0.0', '0.9.0', '0.8.0'].
+    """
+    # Check if the data is a dictionary and it has the key 'modelVersions'
+    if not isinstance(data, dict) or "modelVersions" not in data:
+        raise ValueError("The data is not a dictionary or it does not have the key 'modelVersions'.")
+
+    # Extract the list of model versions
+    model_versions = data["modelVersions"]
+
+    if (
+        not isinstance(model_versions, list)
+        or len(model_versions) == 0
+        or "createdDate" not in model_versions[0]
+        or "versionId" not in model_versions[0]
+    ):
+        raise ValueError(
+            "The model versions are not a list or it is empty or it does not have the keys 'createdDate' and 'versionId'."
+        )
+
+    # Sort the versions by the 'createdDate' in descending order
+    sorted_versions = sorted(model_versions, key=lambda x: x["createdDate"], reverse=True)
+    return [v["versionId"] for v in sorted_versions[:max_versions]]
+
+
+def _get_latest_bundle_version_ngc(name: str, repo: str | None = None, headers: dict | None = None) -> str:
+    base_url = _get_ngc_private_base_url(repo) if repo else NGC_BASE_URL
+    version_endpoint = base_url + f"/{name.lower()}/versions/"
+
+    if not has_requests:
+        raise ValueError("requests package is required, please install it.")
+
+    version_header = {"Accept-Encoding": "gzip, deflate"}  # Excluding 'zstd' to fit NGC requirements
+    if headers:
+        version_header.update(headers)
+    resp = requests_get(version_endpoint, headers=version_header)
+    resp.raise_for_status()
     model_info = json.loads(resp.text)
-    return model_info["model"]["latestVersionIdStr"]
+    latest_versions = _list_latest_versions(model_info)
+
+    for version in latest_versions:
+        file_endpoint = base_url + f"/{name.lower()}/versions/{version}/files/configs/metadata.json"
+        resp = requests_get(file_endpoint, headers=headers)
+        metadata = json.loads(resp.text)
+        resp.raise_for_status()
+        # if the package version is not available or the model is compatible with the package version
+        is_compatible, _ = _examine_monai_version(metadata["monai_version"])
+        if is_compatible:
+            if version != latest_versions[0]:
+                logger.info(f"Latest version is {latest_versions[0]}, but the compatible version is {version}.")
+            return version
+
+    # if no compatible version is found, return the latest version
+    return latest_versions[0]
 
 
 def _get_latest_bundle_version(
@@ -298,17 +396,13 @@ def _get_latest_bundle_version(
 ) -> dict[str, list[str] | str] | Any | None:
     if source == "ngc":
         name = _add_ngc_prefix(name)
-        model_dict = _get_all_ngc_models(name)
-        for v in model_dict.values():
-            if v["name"] == name:
-                return v["latest"]
-        return None
+        return _get_latest_bundle_version_ngc(name)
     elif source == "monaihosting":
         return _get_latest_bundle_version_monaihosting(name)
     elif source == "ngc_private":
         headers = kwargs.pop("headers", {})
         name = _add_ngc_prefix(name)
-        return _get_latest_bundle_version_private_registry(name, repo, headers)
+        return _get_latest_bundle_version_ngc(name, repo=repo, headers=headers)
     elif source == "github":
         repo_owner, repo_name, tag_name = repo.split("/")
         return get_bundle_versions(name, repo=f"{repo_owner}/{repo_name}", tag=tag_name)["latest_version"]
@@ -408,7 +502,7 @@ def download(
         url: url to download the data. If not `None`, data will be downloaded directly
             and `source` will not be checked.
             If `name` is `None`, filename is determined by `monai.apps.utils._basename(url)`.
-        remove_prefix: This argument is used when `source` is "ngc". Currently, all ngc bundles
+        remove_prefix: This argument is used when `source` is "ngc" or "ngc_private". Currently, all ngc bundles
             have the ``monai_`` prefix, which is not existing in their model zoo contrasts. In order to
             maintain the consistency between these two sources, remove prefix is necessary.
             Therefore, if specified, downloaded folder name will remove the prefix.
@@ -470,9 +564,8 @@ def download(
         if version_ is None:
             version_ = _get_latest_bundle_version(source=source_, name=name_, repo=repo_, headers=headers)
         if source_ == "github":
-            if version_ is not None:
-                name_ = "_v".join([name_, version_])
-            _download_from_github(repo=repo_, download_path=bundle_dir_, filename=name_, progress=progress_)
+            name_ver = "_v".join([name_, version_]) if version_ is not None else name_
+            _download_from_github(repo=repo_, download_path=bundle_dir_, filename=name_ver, progress=progress_)
         elif source_ == "monaihosting":
             _download_from_monaihosting(download_path=bundle_dir_, filename=name_, version=version_, progress=progress_)
         elif source_ == "ngc":
@@ -501,6 +594,8 @@ def download(
                 f"got source: {source_}."
             )
 
+    _check_monai_version(bundle_dir_, name_)
+
 
 @deprecated_arg("net_name", since="1.2", removed="1.5", msg_suffix="please use ``model`` instead.")
 @deprecated_arg("net_kwargs", since="1.2", removed="1.5", msg_suffix="please use ``model`` instead.")

monai/bundle/utils.py

@@ -36,7 +36,7 @@ DEFAULT_METADATA = {
     "monai_version": _conf_values["MONAI"],
     "pytorch_version": str(_conf_values["Pytorch"]).split("+")[0].split("a")[0],  # 1.9.0a0+df837d0 or 1.13.0+cu117
     "numpy_version": _conf_values["Numpy"],
-    "optional_packages_version": {},
+    "required_packages_version": {},
     "task": "Describe what the network predicts",
     "description": "A longer description of what the network does, use context, inputs, outputs, etc.",
     "authors": "Your Name Here",
@@ -157,6 +157,8 @@ DEFAULT_MLFLOW_SETTINGS = {
 
 DEFAULT_EXP_MGMT_SETTINGS = {"mlflow": DEFAULT_MLFLOW_SETTINGS}  # default experiment management settings
 
+DEPRECATED_ID_MAPPING = {"optional_packages_version": "required_packages_version"}
+
 
 def load_bundle_config(bundle_path: str, *config_names: str, **load_kw_args: Any) -> Any:
     """

monai/data/meta_tensor.py

@@ -505,7 +505,7 @@ class MetaTensor(MetaObj, torch.Tensor):
         a = self.pending_operations[-1].get(LazyAttr.AFFINE, None) if self.pending_operations else self.affine
         return 1 if a is None else int(max(1, len(a) - 1))
 
-    def new_empty(self, size, dtype=None, device=None, requires_grad=False):
+    def new_empty(self, size, dtype=None, device=None, requires_grad=False):  # type: ignore[override]
         """
         must be defined for deepcopy to work
 
@@ -580,7 +580,7 @@ class MetaTensor(MetaObj, torch.Tensor):
             img.affine = MetaTensor.get_default_affine()
         return img
 
-    def __repr__(self):
+    def __repr__(self):  # type: ignore[override]
         """
         Prints a representation of the tensor.
         Prepends "meta" to ``torch.Tensor.__repr__``.

monai/data/test_time_augmentation.py

@@ -106,6 +106,8 @@ class TestTimeAugmentation:
             mode, mean, std, vvc = tt_aug(test_data)
     """
 
+    __test__ = False  # indicate to pytest that this class is not intended for collection
+
     def __init__(
         self,
         transform: InvertibleTransform,

monai/metrics/cumulative_average.py

@@ -65,6 +65,7 @@ class CumulativeAverage:
         if self.val is None:
             return 0
 
+        val: NdarrayOrTensor
         val = self.val.clone()
         val[~torch.isfinite(val)] = 0
 
@@ -96,6 +97,7 @@ class CumulativeAverage:
             dist.all_reduce(sum)
             dist.all_reduce(count)
 
+        val: NdarrayOrTensor
         val = torch.where(count > 0, sum / count, sum)
 
         if to_numpy:

monai/metrics/panoptic_quality.py

@@ -274,7 +274,7 @@ def _get_paired_iou(
 
         return paired_iou, paired_true, paired_pred
 
-    pairwise_iou = pairwise_iou.cpu().numpy()
+    pairwise_iou = pairwise_iou.cpu().numpy()  # type: ignore[assignment]
     paired_true, paired_pred = linear_sum_assignment(-pairwise_iou)
     paired_iou = pairwise_iou[paired_true, paired_pred]
     paired_true = torch.as_tensor(list(paired_true[paired_iou > match_iou_threshold] + 1), device=device)

monai/metrics/rocauc.py

@@ -88,8 +88,8 @@ def _calculate(y_pred: torch.Tensor, y: torch.Tensor) -> float:
 
     n = len(y)
     indices = y_pred.argsort()
-    y = y[indices].cpu().numpy()
-    y_pred = y_pred[indices].cpu().numpy()
+    y = y[indices].cpu().numpy()  # type: ignore[assignment]
+    y_pred = y_pred[indices].cpu().numpy()  # type: ignore[assignment]
     nneg = auc = tmp_pos = tmp_neg = 0.0
 
     for i in range(n):

monai/networks/blocks/crossattention.py

@@ -109,6 +109,8 @@ class CrossAttentionBlock(nn.Module):
                 torch.tril(torch.ones(sequence_length, sequence_length)).view(1, 1, sequence_length, sequence_length),
             )
             self.causal_mask: torch.Tensor
+        else:
+            self.causal_mask = torch.Tensor()
 
         self.att_mat = torch.Tensor()
         self.rel_positional_embedding = (
@@ -118,7 +120,7 @@ class CrossAttentionBlock(nn.Module):
         )
         self.input_size = input_size
 
-    def forward(self, x: torch.Tensor, context: torch.Tensor | None = None):
+    def forward(self, x: torch.Tensor, context: Optional[torch.Tensor] = None):
         """
         Args:
             x (torch.Tensor): input tensor. B x (s_dim_1 * ... * s_dim_n) x C

monai/networks/blocks/selfattention.py

@@ -105,6 +105,8 @@ class SABlock(nn.Module):
                 torch.tril(torch.ones(sequence_length, sequence_length)).view(1, 1, sequence_length, sequence_length),
             )
             self.causal_mask: torch.Tensor
+        else:
+            self.causal_mask = torch.Tensor()
 
         self.rel_positional_embedding = (
             get_rel_pos_embedding_layer(rel_pos_embedding, input_size, self.dim_head, self.num_heads)

monai/networks/blocks/transformerblock.py

@@ -11,6 +11,8 @@
 
 from __future__ import annotations
 
+from typing import Optional
+
 import torch
 import torch.nn as nn
 
@@ -68,13 +70,12 @@ class TransformerBlock(nn.Module):
         self.norm2 = nn.LayerNorm(hidden_size)
         self.with_cross_attention = with_cross_attention
 
-        if self.with_cross_attention:
-            self.norm_cross_attn = nn.LayerNorm(hidden_size)
-            self.cross_attn = CrossAttentionBlock(
-                hidden_size=hidden_size, num_heads=num_heads, dropout_rate=dropout_rate, qkv_bias=qkv_bias, causal=False
-            )
+        self.norm_cross_attn = nn.LayerNorm(hidden_size)
+        self.cross_attn = CrossAttentionBlock(
+            hidden_size=hidden_size, num_heads=num_heads, dropout_rate=dropout_rate, qkv_bias=qkv_bias, causal=False
+        )
 
-    def forward(self, x: torch.Tensor, context: torch.Tensor | None = None) -> torch.Tensor:
+    def forward(self, x: torch.Tensor, context: Optional[torch.Tensor] = None) -> torch.Tensor:
         x = x + self.attn(self.norm1(x))
         if self.with_cross_attention:
             x = x + self.cross_attn(self.norm_cross_attn(x), context=context)

monai/networks/layers/simplelayers.py

@@ -452,7 +452,7 @@ def get_binary_kernel(window_size: Sequence[int], dtype=torch.float, device=None
 
 def median_filter(
     in_tensor: torch.Tensor,
-    kernel_size: Sequence[int] = (3, 3, 3),
+    kernel_size: Sequence[int] | int = (3, 3, 3),
     spatial_dims: int = 3,
     kernel: torch.Tensor | None = None,
     **kwargs,

monai/networks/nets/quicknat.py

@@ -42,7 +42,7 @@ class SkipConnectionWithIdx(SkipConnection):
     Inherits from SkipConnection but provides the indizes with each forward pass.
     """
 
-    def forward(self, input, indices):
+    def forward(self, input, indices):  # type: ignore[override]
         return super().forward(input), indices
 
 
@@ -57,7 +57,7 @@ class SequentialWithIdx(nn.Sequential):
     def __init__(self, *args):
         super().__init__(*args)
 
-    def forward(self, input, indices):
+    def forward(self, input, indices):  # type: ignore[override]
         for module in self:
             input, indices = module(input, indices)
         return input, indices
@@ -165,7 +165,7 @@ class ConvConcatDenseBlock(ConvDenseBlock):
         )
         return nn.Sequential(conv.get_submodule("adn"), conv.get_submodule("conv"))
 
-    def forward(self, input, _):
+    def forward(self, input, _):  # type: ignore[override]
         i = 0
         result = input
         result1 = input  # this will not stay this value, needed here for pylint/mypy
@@ -215,7 +215,7 @@ class Encoder(ConvConcatDenseBlock):
         super().__init__(in_channels, se_layer, dropout, kernel_size, num_filters)
         self.max_pool = max_pool
 
-    def forward(self, input, indices=None):
+    def forward(self, input, indices=None):  # type: ignore[override]
         input, indices = self.max_pool(input)
 
         out_block, _ = super().forward(input, None)
@@ -243,7 +243,7 @@ class Decoder(ConvConcatDenseBlock):
         super().__init__(in_channels, se_layer, dropout, kernel_size, num_filters)
         self.un_pool = un_pool
 
-    def forward(self, input, indices):
+    def forward(self, input, indices):  # type: ignore[override]
         out_block, _ = super().forward(input, None)
         out_block = self.un_pool(out_block, indices)
         return out_block, None
@@ -270,7 +270,7 @@ class Bottleneck(ConvConcatDenseBlock):
         self.max_pool = max_pool
         self.un_pool = un_pool
 
-    def forward(self, input, indices):
+    def forward(self, input, indices):  # type: ignore[override]
         out_block, indices = self.max_pool(input)
         out_block, _ = super().forward(out_block, None)
         out_block = self.un_pool(out_block, indices)

monai/networks/nets/spade_autoencoderkl.py

@@ -59,7 +59,7 @@ class SPADEResBlock(nn.Module):
             label_nc=label_nc,
             norm_nc=in_channels,
             norm="GROUP",
-            norm_params={"num_groups": norm_num_groups, "affine": False},
+            norm_params={"num_groups": norm_num_groups, "affine": False, "eps": norm_eps},
             hidden_channels=spade_intermediate_channels,
             kernel_size=3,
             spatial_dims=spatial_dims,
@@ -77,7 +77,7 @@ class SPADEResBlock(nn.Module):
             label_nc=label_nc,
             norm_nc=out_channels,
             norm="GROUP",
-            norm_params={"num_groups": norm_num_groups, "affine": False},
+            norm_params={"num_groups": norm_num_groups, "affine": False, "eps": norm_eps},
             hidden_channels=spade_intermediate_channels,
             kernel_size=3,
             spatial_dims=spatial_dims,

monai/transforms/croppad/array.py

@@ -362,10 +362,10 @@ class Crop(InvertibleTransform, LazyTransform):
 
     @staticmethod
     def compute_slices(
-        roi_center: Sequence[int] | NdarrayOrTensor | None = None,
-        roi_size: Sequence[int] | NdarrayOrTensor | None = None,
-        roi_start: Sequence[int] | NdarrayOrTensor | None = None,
-        roi_end: Sequence[int] | NdarrayOrTensor | None = None,
+        roi_center: Sequence[int] | int | NdarrayOrTensor | None = None,
+        roi_size: Sequence[int] | int | NdarrayOrTensor | None = None,
+        roi_start: Sequence[int] | int | NdarrayOrTensor | None = None,
+        roi_end: Sequence[int] | int | NdarrayOrTensor | None = None,
         roi_slices: Sequence[slice] | None = None,
     ) -> tuple[slice]:
         """
@@ -459,10 +459,10 @@ class SpatialCrop(Crop):
 
     def __init__(
         self,
-        roi_center: Sequence[int] | NdarrayOrTensor | None = None,
-        roi_size: Sequence[int] | NdarrayOrTensor | None = None,
-        roi_start: Sequence[int] | NdarrayOrTensor | None = None,
-        roi_end: Sequence[int] | NdarrayOrTensor | None = None,
+        roi_center: Sequence[int] | int | NdarrayOrTensor | None = None,
+        roi_size: Sequence[int] | int | NdarrayOrTensor | None = None,
+        roi_start: Sequence[int] | int | NdarrayOrTensor | None = None,
+        roi_end: Sequence[int] | int | NdarrayOrTensor | None = None,
         roi_slices: Sequence[slice] | None = None,
         lazy: bool = False,
     ) -> None:

monai/transforms/croppad/dictionary.py

@@ -438,10 +438,10 @@ class SpatialCropd(Cropd):
     def __init__(
         self,
         keys: KeysCollection,
-        roi_center: Sequence[int] | None = None,
-        roi_size: Sequence[int] | None = None,
-        roi_start: Sequence[int] | None = None,
-        roi_end: Sequence[int] | None = None,
+        roi_center: Sequence[int] | int | None = None,
+        roi_size: Sequence[int] | int | None = None,
+        roi_start: Sequence[int] | int | None = None,
+        roi_end: Sequence[int] | int | None = None,
         roi_slices: Sequence[slice] | None = None,
         allow_missing_keys: bool = False,
         lazy: bool = False,

monai/transforms/croppad/functional.py

@@ -48,7 +48,7 @@ def _np_pad(img: NdarrayTensor, pad_width: list[tuple[int, int]], mode: str, **k
             warnings.warn(f"Padding: moving img {img.shape} from cuda to cpu for dtype={img.dtype} mode={mode}.")
         img_np = img.detach().cpu().numpy()
     else:
-        img_np = img
+        img_np = np.asarray(img)
     mode = convert_pad_mode(dst=img_np, mode=mode).value
     if mode == "constant" and "value" in kwargs:
         kwargs["constant_values"] = kwargs.pop("value")

monai/transforms/post/array.py

@@ -211,7 +211,8 @@ class AsDiscrete(Transform):
             raise ValueError("`to_onehot=True/False` is deprecated, please use `to_onehot=num_classes` instead.")
         img = convert_to_tensor(img, track_meta=get_track_meta())
         img_t, *_ = convert_data_type(img, torch.Tensor)
-        if argmax or self.argmax:
+        argmax = self.argmax if argmax is None else argmax
+        if argmax:
             img_t = torch.argmax(img_t, dim=self.kwargs.get("dim", 0), keepdim=self.kwargs.get("keepdim", True))
 
         to_onehot = self.to_onehot if to_onehot is None else to_onehot

monai/transforms/spatial/array.py

@@ -3441,7 +3441,7 @@ class RandGridPatch(GridPatch, RandomizableTransform, MultiSampleTrait):
             idx = self.R.permutation(image_np.shape[0])
             idx = idx[: self.num_patches]
             idx_np = convert_data_type(idx, np.ndarray)[0]
-            image_np = image_np[idx]
+            image_np = image_np[idx]  # type: ignore[index]
             locations = locations[idx_np]
             return image_np, locations
         elif self.sort_fn not in (None, GridPatchSort.MIN, GridPatchSort.MAX):

monai/visualize/class_activation_maps.py

@@ -290,7 +290,7 @@ class CAM(CAMBase):
         )
         self.fc_layers = fc_layers
 
-    def compute_map(self, x, class_idx=None, layer_idx=-1, **kwargs):
+    def compute_map(self, x, class_idx=None, layer_idx=-1, **kwargs):  # type: ignore[override]
         logits, acti, _ = self.nn_module(x, **kwargs)
         acti = acti[layer_idx]
         if class_idx is None:
@@ -302,7 +302,7 @@ class CAM(CAMBase):
         output = torch.stack([output[i, b : b + 1] for i, b in enumerate(class_idx)], dim=0)
         return output.reshape(b, 1, *spatial)  # resume the spatial dims on the selected class
 
-    def __call__(self, x, class_idx=None, layer_idx=-1, **kwargs):
+    def __call__(self, x, class_idx=None, layer_idx=-1, **kwargs):  # type: ignore[override]
         """
         Compute the activation map with upsampling and postprocessing.
 
@@ -361,7 +361,7 @@ class GradCAM(CAMBase):
 
     """
 
-    def compute_map(self, x, class_idx=None, retain_graph=False, layer_idx=-1, **kwargs):
+    def compute_map(self, x, class_idx=None, retain_graph=False, layer_idx=-1, **kwargs):  # type: ignore[override]
         _, acti, grad = self.nn_module(x, class_idx=class_idx, retain_graph=retain_graph, **kwargs)
         acti, grad = acti[layer_idx], grad[layer_idx]
         b, c, *spatial = grad.shape
@@ -369,7 +369,7 @@ class GradCAM(CAMBase):
         acti_map = (weights * acti).sum(1, keepdim=True)
         return F.relu(acti_map)
 
-    def __call__(self, x, class_idx=None, layer_idx=-1, retain_graph=False, **kwargs):
+    def __call__(self, x, class_idx=None, layer_idx=-1, retain_graph=False, **kwargs):  # type: ignore[override]
         """
         Compute the activation map with upsampling and postprocessing.
 
@@ -401,7 +401,7 @@ class GradCAMpp(GradCAM):
 
     """
 
-    def compute_map(self, x, class_idx=None, retain_graph=False, layer_idx=-1, **kwargs):
+    def compute_map(self, x, class_idx=None, retain_graph=False, layer_idx=-1, **kwargs):  # type: ignore[override]
         _, acti, grad = self.nn_module(x, class_idx=class_idx, retain_graph=retain_graph, **kwargs)
         acti, grad = acti[layer_idx], grad[layer_idx]
         b, c, *spatial = grad.shape

monai/visualize/img2tensorboard.py

@@ -176,7 +176,9 @@ def plot_2d_or_3d_image(
     # as the `d` data has no batch dim, reduce the spatial dim index if positive
     frame_dim = frame_dim - 1 if frame_dim > 0 else frame_dim
 
-    d: np.ndarray = data_index.detach().cpu().numpy() if isinstance(data_index, torch.Tensor) else data_index
+    d: np.ndarray = (
+        data_index.detach().cpu().numpy() if isinstance(data_index, torch.Tensor) else np.asarray(data_index)
+    )
 
     if d.ndim == 2:
         d = rescale_array(d, 0, 1)  # type: ignore

{monai_weekly-1.4.dev2429.dist-info → monai_weekly-1.4.dev2431.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: monai-weekly
-Version: 1.4.dev2429
+Version: 1.4.dev2431
 Summary: AI Toolkit for Healthcare Imaging
 Home-page: https://monai.io/
 Author: MONAI Consortium

{monai_weekly-1.4.dev2429.dist-info → monai_weekly-1.4.dev2431.dist-info}/RECORD

@@ -1,5 +1,5 @@
-monai/__init__.py,sha256=igwUikSNl5syALCd18ua4ojeTw5PTWw1vs_D0A9juJg,2722
-monai/_version.py,sha256=XDxyJPaem09EQL9zuhK7_fHS0JGj-YI67kc66bBGmq4,503
+monai/__init__.py,sha256=dXBm2eh5DsP3pasuxDuHHGRAwh3K_BrVq4EybgqpOQg,2722
+monai/_version.py,sha256=fHOVhDg9cUEScqRJF52042X5Hjis0bgHRM4yagWLeUg,503
 monai/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 monai/_extensions/__init__.py,sha256=NEBPreRhQ8H9gVvgrLr_y52_TmqB96u_u4VQmeNT93I,642
 monai/_extensions/loader.py,sha256=7SiKw36q-nOzH8CRbBurFrz7GM40GCu7rc93Tm8XpnI,3643
@@ -17,7 +17,7 @@ monai/apps/auto3dseg/auto_runner.py,sha256=a4Ry93TkK0aTb68bwle8HoG4SzUbUf0IbDrY3
 monai/apps/auto3dseg/bundle_gen.py,sha256=y_9lbw0xk1em0TsIn7mTJHmD3OQNcNZVsjgkhdYg0Lw,28994
 monai/apps/auto3dseg/data_analyzer.py,sha256=XJuQ-bSE3G_6r2i6S75jjo-klWTUGpy5aY3WqijSWqk,18628
 monai/apps/auto3dseg/ensemble_builder.py,sha256=GaLpeAIW5X9oC921cevE86coOsmXW2C136FHuo6UyMo,27277
-monai/apps/auto3dseg/hpo_gen.py,sha256=15u6SYIFfdwb-McQzb9Fcq3-jZjbi3idD8_XQX0veZU,16674
+monai/apps/auto3dseg/hpo_gen.py,sha256=VMfN0M5Z8Mq3Epu4fgOD5N6X-BY2PARIC69wW2t5EQU,16691
 monai/apps/auto3dseg/transforms.py,sha256=iO4v9-dwQzvupJglX-H2HYuwUhmFdVgLbyh4BuDy7DY,3991
 monai/apps/auto3dseg/utils.py,sha256=7DPJbsL9YbhRdMZ6dEvCA_t_uLSSz7-WZSU2pMY4_qo,3138
 monai/apps/deepedit/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
@@ -77,7 +77,7 @@ monai/apps/pathology/metrics/__init__.py,sha256=c7xRUzhQesEWRIUFF6vM-Qs9v0Lv8QzC
 monai/apps/pathology/metrics/lesion_froc.py,sha256=LNwcuatNEppyWMehnpBOn1474jH0hOJCq3gdq5mNw8k,7331
 monai/apps/pathology/transforms/__init__.py,sha256=c3YkornqjX-fHRnwkpn_PxmnMje6pif1qxPdFNyQUWU,2243
 monai/apps/pathology/transforms/post/__init__.py,sha256=WUZbaM2bg13mpbnNhol0D0A328XgUspTWtPvli1Uqpk,1995
-monai/apps/pathology/transforms/post/array.py,sha256=g9NEacqiWadDLaqN227Kk-2odMSsSysxsJm4TQcIejY,37271
+monai/apps/pathology/transforms/post/array.py,sha256=gYIuHMPhGcomPE4RKfS9Zv-7IytCUUBCpl-r9w4rGHA,37417
 monai/apps/pathology/transforms/post/dictionary.py,sha256=ZReeFqcZRkltwhRaKsedeptprB1B89lKWFimAzkk0Vg,25928
 monai/apps/pathology/transforms/stain/__init__.py,sha256=i9HfrXiQHG5XHfqMtz2g7yBX7p1uN0xcGAPCYyXSmV8,836
 monai/apps/pathology/transforms/stain/array.py,sha256=Dr1fCmkQzc8n40XbLAHpq1EG5wkMqTjWgYN2FGJfMGk,8366
@@ -102,18 +102,18 @@ monai/apps/tcia/label_desc.py,sha256=B8l9mVmRzLysLmEIIYVeenly_68okCt461qeLQSxCJ8
 monai/apps/tcia/utils.py,sha256=iyLXr5_51rolbRUZFN_Fwc6TIhAbeSl6XZ2m5RYpzTw,6303
 monai/auto3dseg/__init__.py,sha256=DbZC7wqx4zBNcguLQGu8bGmAiKnk9LvjtQDtwdwG19I,1164
 monai/auto3dseg/algo_gen.py,sha256=_BscoAnUzQKRqz5jHvdsuCe3tTxq7PUQYPMLX0WuxCc,4286
-monai/auto3dseg/analyzer.py,sha256=-2CTCFhufE6oqGvNRcNF7NQ8ovzL_U5nouxqB14koEI,41323
+monai/auto3dseg/analyzer.py,sha256=7l8QT36lG68b8rK23CC2omz6PO1fxmDwOljxXMn5clQ,41351
 monai/auto3dseg/operations.py,sha256=1sNDWnz5Zs2-scpb1wotxar7yGYQ-VPI-_b2KnZqW9g,5110
 monai/auto3dseg/seg_summarizer.py,sha256=T5Kwvc6eKet-vlzvBQgCLHbxHto-P5tiN_7uIk5uVfs,8717
 monai/auto3dseg/utils.py,sha256=zEicEO_--6-1kzT5HlmhAAd575gnl2AFmW8O3FnIznE,18674
 monai/bundle/__init__.py,sha256=xvYgiAzq9fiyMkCRo0vwn41ZSzj0udyvF0jmySnqBRI,1443
 monai/bundle/__main__.py,sha256=RiAn6raPUvPMfXvd03irAhB3nkIAgG1lf8GE34PG4Js,952
 monai/bundle/config_item.py,sha256=rMjXSGkjJZdi04BwSHwCcIwzIb_TflmC3xDhC3SVJRs,16151
-monai/bundle/config_parser.py,sha256=IewIX0HnjzL5nZYdcSdWGzc7Z4xqUaOTb9wa6wjZ4Y8,22895
+monai/bundle/config_parser.py,sha256=euPLLd9An2HYV7RoO-z0UDCbna-Gaq9tm_lIK3Ay1OM,22969
 monai/bundle/properties.py,sha256=iN3K4FVmN9ny1Hw9p5j7_ULcCdSD8PmrR7qXxbNz49k,11582
-monai/bundle/reference_resolver.py,sha256=1qdz732zl1dwSWyKaW6JOs1YqoCrXu7NBi5jz3zjqxA,15747
-monai/bundle/scripts.py,sha256=PPnwDSOch0BC_BHCA86Ahm04ui7QXdSgqm4bDempk6Q,84955
-monai/bundle/utils.py,sha256=Heob15Gf_dVpt-Gcts4sycoUny0nr7RvevNVSKe6sqc,8950
+monai/bundle/reference_resolver.py,sha256=aBw3ML7B_YsiFUNl_mcRYPry1UbrEIK0R39A0zFw8kI,16463
+monai/bundle/scripts.py,sha256=itzeju2vTSaof1UomzXmIVJHt7NnHjeKXO9KOnfASmk,88789
+monai/bundle/utils.py,sha256=wzYtp2MuzKyq_zv-cwNqz_81BlDUTubqtyDAF8-bgOA,9034
 monai/bundle/workflows.py,sha256=VMuBTkk6DGsnGRLFzNfVUzgy8UqUReluUlIPUaxODPQ,24765
 monai/config/__init__.py,sha256=CN28CfTdsp301gv8YXfVvkbztCfbAqrLKrJi_C8oP9s,1048
 monai/config/deviceconfig.py,sha256=3EU1Zi6yD_bxEAeHfzjbslEjq6vOvxNG6o9dxKUiEvc,10315
@@ -134,10 +134,10 @@ monai/data/image_writer.py,sha256=rH6vboPFkX4ziN3lnrmK6AzAOQYI9tEiOJb7Al2tj-8,39
 monai/data/iterable_dataset.py,sha256=A0L5jaxwnfgProBj96tlT160esI21yutnTf3a4c29Ms,13100
 monai/data/itk_torch_bridge.py,sha256=3th-B3tJuJE22JFfOUgGeTMOPh1czJEiSccFyn_Ob0w,14461
 monai/data/meta_obj.py,sha256=OxfcCSBFuN0fUpyIa9ey9HuqrqimARNnEZPuqRRXjLo,8800
-monai/data/meta_tensor.py,sha256=JfXsW6qSLGHacZMQyeW3Y1cRtxH7sIRPknnTTNcxwpk,27478
+monai/data/meta_tensor.py,sha256=GG8CPjRZhPCShryY3cnyA5G2Crl_Q7Sym2pw5cVxBL0,27530
 monai/data/samplers.py,sha256=LUCAHy38ddGm67oJJp3W6ITBsDRqyGCrKtYn-pjrWc4,5102
 monai/data/synthetic.py,sha256=H0MaQq2nnYxXEMlvOW1-XoWJWY_VKsgZ75tWLO1aCXg,7375
-monai/data/test_time_augmentation.py,sha256=H1yUph4SkJ-bmKRXS-SRZfNKtWkihR7o4PTUWKuHxOw,9780
+monai/data/test_time_augmentation.py,sha256=KgIcPDwF_KelBCX118J5gx13sefGaDgQFUDgGWCZujA,9871
 monai/data/thread_buffer.py,sha256=FtJlRwLHQzU9sf3XJk4G7b_-uKXaRQHAOMauc-zWN2Q,8840
 monai/data/torchscript_utils.py,sha256=KoJinpJiNepP6i-1DDy3-8m1Qg1bPfAZTScmXr0LT6g,5502
 monai/data/ultrasound_confidence_map.py,sha256=pEAp4lr-s00_T9d4IEYSJ5B9VQwf_T7BS9GBx8jw_Sg,14464
@@ -218,7 +218,7 @@ monai/losses/unified_focal_loss.py,sha256=rCj8IpueYH_UMrOUXU0tjbXIN4Uix3bGnRZQtR
 monai/metrics/__init__.py,sha256=DUjK3_qfGZbw0zCv6OJgMSL3AfiYN47aYqLsxn69-HU,2174
 monai/metrics/active_learning_metrics.py,sha256=uKID2O4mnY-9P2ZzyT4sqJd2NfgzjSpNKpAwulWCozU,8211
 monai/metrics/confusion_matrix.py,sha256=Spb20jYPnbgGZfPKDQI36ePznPf1xujxhboNnW8HxdQ,15064
-monai/metrics/cumulative_average.py,sha256=UINnp__332Kb4gDdIu6WAror11kQ0GxCeLydlsFx6tc,5578
+monai/metrics/cumulative_average.py,sha256=8GGjHmiBboBikprg1380SsNn7RgzFIrHGWBYDBv6ebE,5636
 monai/metrics/f_beta_score.py,sha256=urI0J_tvl0qQ5-l2fgWV_jChbgpzLmgpRq125B3yxpw,3984
 monai/metrics/fid.py,sha256=P9wBKnumEdCgKlVUuEt9XzY5umPK1fXnnyXmljDl5N4,4794
 monai/metrics/froc.py,sha256=q7MAFsHHIp5EHBHwa5UbF5PRApjUonw-hUXax9k1WxQ,7981
@@ -229,9 +229,9 @@ monai/metrics/meandice.py,sha256=bFiDcK-af4cqV-JHAO2Qh2ixwj6fLjaBCaCO6jBAmxQ,134
 monai/metrics/meaniou.py,sha256=cGoW1re7v4hxXJfjyEVEFNsuzEupgJaIe6ZK_qrbIjw,7004
 monai/metrics/metric.py,sha256=VtIMNudwFkEhGAX1n0aYMaj18yKtmENKpo0JuWoVFvQ,15203
 monai/metrics/mmd.py,sha256=a_O0WlUPrtegG16eBnEaf1HngPN4s4nAH1WtvGo-8BU,3299
-monai/metrics/panoptic_quality.py,sha256=2CfSB1B0mwVOfTCuRNuYAn7XI8G4NPFRPc7NTbv5JNc,13679
+monai/metrics/panoptic_quality.py,sha256=hsOr9kac9LLVOI2tvFuY80sfTk9w9HOG6zaBxtjFBvI,13707
 monai/metrics/regression.py,sha256=JV7x8ibD04hZeWz83Ac26jjyufsCanvAmohD-eWKtbY,26218
-monai/metrics/rocauc.py,sha256=CJOAzDamB8TcFP1bEg-I1m5V1-Pq5RMaLFdM6MtNa_E,8038
+monai/metrics/rocauc.py,sha256=xOopgYaahaH1-PmD4yG3B3f25kA95yK56BbXIykra60,8094
 monai/metrics/surface_dice.py,sha256=aNERsTuJkPMfxatPaAzoW1KtvZvUAv4qe_7Kl_dOROI,15149
 monai/metrics/surface_distance.py,sha256=bKDTm7ulhjfiphHLrDJoA3OKI3npwQy2Z5wY-JkXtXg,9727
 monai/metrics/utils.py,sha256=jJiIFGGa-iwvz1otHAKqPKTNmfZqd2dI7_Hsfblgxqk,46914
@@ -246,7 +246,7 @@ monai/networks/blocks/attention_utils.py,sha256=UAlttLpn8vJCIiYyWXEUF-NzVTQBOK-a
 monai/networks/blocks/backbone_fpn_utils.py,sha256=mdXFwtnRgwuaisTlY-c7OkY1ZZBY3I82dAjpXFAZFbg,7488
 monai/networks/blocks/convolutions.py,sha256=gRmbYfy3IR4taiXuxeH5KGOFjP55FoVWfP4e1L6ai0s,11686
 monai/networks/blocks/crf.py,sha256=gHyRgBWD9DmmbCJnXwsMa6WN7N9fDLuT_SwH8MnHhXE,5009
-monai/networks/blocks/crossattention.py,sha256=92ikn4q0B2H0wRzu2O7impc1K-nZPgAGho5yRqdVY_s,7389
+monai/networks/blocks/crossattention.py,sha256=ofE4BBMnOYilwujR_RVuCafFCdvKeeRIJgMd-y0qEVk,7452
 monai/networks/blocks/denseblock.py,sha256=hs1rcBp95euZT5ULjgefPApZH75-hqSaVKKNtHdGt10,4747
 monai/networks/blocks/dints_block.py,sha256=-JWz4-nnAjrOxU2oJ86-qN8Krb8FayKS8Zpbp1wLXzc,9255
 monai/networks/blocks/downsample.py,sha256=18cwYXL5H3DC5Yq12cdqTIijDJfMCE2YNHlPetFB6UY,2413
@@ -262,12 +262,12 @@ monai/networks/blocks/pos_embed_utils.py,sha256=vFEQqxZ6UAmjcy_icFDL9EwjRHYXuIbW
 monai/networks/blocks/regunet_block.py,sha256=1FLIwVBtk66II6xQ7Q4LMY8DP0rMmeftN7HuaEgnf3A,8825
 monai/networks/blocks/rel_pos_embedding.py,sha256=wuTJsk_NHSDX-3V0X9ctF99WIh2-SHLDbQxzrG7tz_4,2208
 monai/networks/blocks/segresnet_block.py,sha256=dREFa0CWuSWlSOm53fT7vZz6UC2J_7JAEaeHB9rYjAk,3339
-monai/networks/blocks/selfattention.py,sha256=w9Ovrv_8EAkDeuGnSxo9hEm4qPw5W-wOUjSrFHYmgyY,6328
+monai/networks/blocks/selfattention.py,sha256=RlCE9x_YIC4EeNKajJbhmFnA_Zftz8gyHu62kV3uxHA,6388
 monai/networks/blocks/spade_norm.py,sha256=Kq2ImmCQBaFURMnOTj08aphgGkF3ghDm19kXpPRq91c,3654
 monai/networks/blocks/spatialattention.py,sha256=DIHg9hGM5m1Rn0Bt6aP5Y2Fqqvc5D0I4PmbbLovb5m8,3308
 monai/networks/blocks/squeeze_and_excitation.py,sha256=y2kXgoSFxywu-KCGYbI_d-NCCAEbuKAIY5gSqO_T7TI,12752
 monai/networks/blocks/text_embedding.py,sha256=HIlCTQCSyOEXnqo1l9TOC05duCoeWd9Kb4Oc0gvLZKw,3814
-monai/networks/blocks/transformerblock.py,sha256=rSwbV-F33f7KEJZTXMIUjM_WlSsz_bE-hCZvKHcgiO8,3112
+monai/networks/blocks/transformerblock.py,sha256=CTN_UBsD0dVfGZYCUDukOX1jWTFzp2nnSJMMh8iL9vE,3090
 monai/networks/blocks/unetr_block.py,sha256=d_rqE76OFfd3QRcHuor5Zei2pOrupoleBWu3eYUup0c,9049
 monai/networks/blocks/upsample.py,sha256=CeqqKx31gNw1CT3xz6UpU0fOjgW-7ZWxCRAOH4qAcxs,14024
 monai/networks/blocks/warp.py,sha256=XVFZKZR0kBhEtU5-xQsaqL06a-pAI7JJVupQCD2X4e8,7255
@@ -278,7 +278,7 @@ monai/networks/layers/drop_path.py,sha256=SZtRNa1bDwk1rXWbUe70YDaw6H_NKeplm_Wk5Y
 monai/networks/layers/factories.py,sha256=dMj-y3LRV5P_FmqMCZuf_A8P8l_fge3TVAXWzNhONuo,15795
 monai/networks/layers/filtering.py,sha256=7ru9Yt3yOM-ko-UqzYp-2tMpb8VHt5d767F-KkzrqYY,17992
 monai/networks/layers/gmm.py,sha256=Aq-YCHgUalgOZQ0x5mwYKJe1G7aiCiJybdkPTiiT120,3325
-monai/networks/layers/simplelayers.py,sha256=MhJ0h-Tf4_ZXMMB1gGwc8Plheja6X5PToTJ0tMHjjuE,28472
+monai/networks/layers/simplelayers.py,sha256=ciUdKrj_DpEdT3AKs70aPySh73UMsyhoOCTiR2qk8Js,28478
 monai/networks/layers/spatial_transforms.py,sha256=fz2t7-ibijNLqTYpAn4ZgdXtzBSIyWlaF35mQtqWRY4,25581
 monai/networks/layers/utils.py,sha256=k_2xVO8BTEMMVJtemUyKBWw4_5xtqd6OOTOG8qld8To,4916
 monai/networks/layers/vector_quantizer.py,sha256=0PCcaH5_uaxFORHgEetQKazq74jgOVmvQJ3h4Ywat6Y,10058
@@ -306,14 +306,14 @@ monai/networks/nets/hovernet.py,sha256=E831rgNN8SP1lui8-ffV7IUscDWvyTr-YTqXcpof8
 monai/networks/nets/milmodel.py,sha256=aUDgYJG0kS3p4nBW_dF7b4cWwuC31w3KIzmUzXA08HE,9813
 monai/networks/nets/netadapter.py,sha256=JtcME9pcg8ud4jHKZKM9fE-8leP2PQXgUIfKBdB0wcA,6102
 monai/networks/nets/patchgan_discriminator.py,sha256=yTT0on0lzlDwSu4B9McMqdxqu5xD7Ws9wCwEkxvJEu0,8620
-monai/networks/nets/quicknat.py,sha256=MIis98IqgIPYEd3p8kZO6PTmZURcKu8ZLdBse2LPX9M,20307
+monai/networks/nets/quicknat.py,sha256=ko1BO9l4i4BVYG5V4ohkwUEyoRrPPPzmqNqnFhLTZ0k,20463
 monai/networks/nets/regressor.py,sha256=6Nz5yJuQDJJOr5R0rhot_mHu7_MDCA4ybV48wS1HS1M,6482
 monai/networks/nets/regunet.py,sha256=-A6ygR7lVyAflFyqWkVVOsY94uMXWol1f2xr_HmsU1c,18664
 monai/networks/nets/resnet.py,sha256=oo1MCA9hccBVwDcMrZNpVmbDSRn3dOEkrn3DbKW2WZk,28141
 monai/networks/nets/segresnet.py,sha256=xNkSIvdk7kAyc3eVn-U_gGj8MoGVc5nklFKc_fkgOUs,13994
 monai/networks/nets/segresnet_ds.py,sha256=01R-t-cIvAoVEsqTRPC2sHVYGyiVfcvy8hng53X-6yQ,15703
 monai/networks/nets/senet.py,sha256=gulqPMYmSABbMbN39NElGzSU1TKGviJas7EPTBaZ60A,19289
-monai/networks/nets/spade_autoencoderkl.py,sha256=4PVlLjKEMHYEmmsGcRhsDBNy9I0gXOTTowmTpeZYylw,18243
+monai/networks/nets/spade_autoencoderkl.py,sha256=lu4uPsNWIXKhzaVQ4iplTQ9g3eeViIHMXLH0nOaNanc,18277
 monai/networks/nets/spade_diffusion_model_unet.py,sha256=JQJRMX96jLHPPUmetpCpy5ZPm4qjoO-NoI4dfnWNaPI,36785
 monai/networks/nets/spade_network.py,sha256=GguYucjIRyT_rZa9DrvUmv00FtqXHZtY1VfJM9Rygns,16479
 monai/networks/nets/swin_unetr.py,sha256=H7cjCHZJmZoXDcVFYXJM5iPfQbHZGt1AES2-UoNsGo4,44849
@@ -350,10 +350,10 @@ monai/transforms/utils.py,sha256=-5AoltSz1qqIZ1jhYAWtis8gJd781Tj9g-coyYvBTZU,949
 monai/transforms/utils_create_transform_ims.py,sha256=QEJVHsCZX7ZxsBArk6NjgCzSZuuokf8l1uFqiUZBBys,31155
 monai/transforms/utils_pytorch_numpy_unification.py,sha256=9Exl8id6kPbFvdZLcgfpj0FCUSjrwIlB7qiSQ4OdTZM,18779
 monai/transforms/croppad/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
-monai/transforms/croppad/array.py,sha256=5W7ydnsaMxJ3vLSnfNyta6tHvJND1lmdqXEXasoSKBg,74745
+monai/transforms/croppad/array.py,sha256=mSzd1XdNK4vZB98fll-gREQM1EWuPOfNdUNTpmiy-QA,74793
 monai/transforms/croppad/batch.py,sha256=5ukcYk3VCDpk62AL5Q_jTqpXmSNTlw0UCUhDeAB4aV0,6138
-monai/transforms/croppad/dictionary.py,sha256=2pf_k3gvDi7ruzj6bx2gVNIae7SatiLEWLg7EKJZDbg,60722
-monai/transforms/croppad/functional.py,sha256=_agF3ustEVXVuKSF8qGNhXCrb3E6mc5Qypy37_MQU-8,12628
+monai/transforms/croppad/dictionary.py,sha256=WOzj_PjmoB3zLEmtQlafb9-PWgXd-s5K7Z5Doc8Adns,60746
+monai/transforms/croppad/functional.py,sha256=iroD0XBaMG1Mox6-EotIh2nAUxJPrpIyUrHopc83Sug,12640
 monai/transforms/intensity/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
 monai/transforms/intensity/array.py,sha256=bhKIAMgJu-QMQA8df9QdyancMJMShOIOGHjE__4XdXo,121574
 monai/transforms/intensity/dictionary.py,sha256=RXZeQG9dPvdvjoiWWlNkYec4NDWBxYXjfct4fywv1Ic,85059
@@ -368,7 +368,7 @@ monai/transforms/lazy/utils.py,sha256=dtLRJlIpp5Seh8hyb5fcN88-SH7Vsg5uLK1p3ftQdP
 monai/transforms/meta_utility/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
 monai/transforms/meta_utility/dictionary.py,sha256=YqbYeZOi4cFEmEPmrw2VIpOIwre6wxYB2UGZSrf-MoM,4896
 monai/transforms/post/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
-monai/transforms/post/array.py,sha256=Btv9zElhzHpGAJSGp6N49mXZCI_DeVlB3gXY0Ue00_k,44998
+monai/transforms/post/array.py,sha256=06Dfd_6cf-VJneet7WwbxFFlJEhYh365xu3fkcvGTws,45042
 monai/transforms/post/dictionary.py,sha256=pq4Oh3GoDcS6sjUkLvHzYmySxuxzVW7grjogFuRsUsA,43042
 monai/transforms/regularization/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
 monai/transforms/regularization/array.py,sha256=yJbvs0-ElS7uK8jEZzYOL-nW2wizXvwni77s1pR7qvk,8036
@@ -380,7 +380,7 @@ monai/transforms/smooth_field/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6F
 monai/transforms/smooth_field/array.py,sha256=Pz4ErmcfVTRZpBe4_IAXTWHlGSmRfExegNKYyrSVwsE,17856
 monai/transforms/smooth_field/dictionary.py,sha256=iU4V2VjSy2H1K03KgumMUr3cyZVWEJS0W-tgc6SZtP4,11194
 monai/transforms/spatial/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
-monai/transforms/spatial/array.py,sha256=8HRXz4zyJq11uPiGUzq39QLsN0fD3JNJF1Q4Xjyd8k0,183231
+monai/transforms/spatial/array.py,sha256=alooVNRtqxNFycF1G31J23sgz3EJnddzJImQUajNWBY,183254
 monai/transforms/spatial/dictionary.py,sha256=mvP_skSEI1sMl9y-AS3PZqNHhTLK6iOVOfbdezpNiNs,131672
 monai/transforms/spatial/functional.py,sha256=DCeJg2s3pPGd87cpryMsUMObTePhnDf4QX_dKtRpFTo,31249
 monai/transforms/utility/__init__.py,sha256=s9djSd6kvViPnFvMR11Dgd30Lv4oY6FaPJr4ZZJZLq0,573
@@ -403,14 +403,14 @@ monai/utils/state_cacher.py,sha256=ERBE-mnnf47MwKSq-pNbfu1D2C4ZqKH-mORyLaBa3EE,5
 monai/utils/tf32.py,sha256=4bqpPxoTAMmQDNRbbrd4qHG27e1RrxeAmfDf3vP8tQc,3141
 monai/utils/type_conversion.py,sha256=CwmAfcFNgNOQdMaNdrDcIuj7_esJls4-BymtMD03ZuM,21520
 monai/visualize/__init__.py,sha256=p7dv9-hRa9vAhlpHyk86yap9HgeDeJRO3pXmFhDx8Mc,1038
-monai/visualize/class_activation_maps.py,sha256=jBej0DVDzXJlSpwGjHw4k84R-jFfux4Rvpdg-nuzzZ8,16158
+monai/visualize/class_activation_maps.py,sha256=5eEQkmpcE3QpivadjlsRZBLcUc7NpJHDfWkKCLOAnUM,16288
 monai/visualize/gradient_based.py,sha256=oXqMxqIClVlrgloZwgdTUl4pWllsoS0ysbjuvAbu-Kg,6278
-monai/visualize/img2tensorboard.py,sha256=_p5olAefUs6t-y17z0TK32fKxNnUNXVkb0Op1SkfLMM,9200
+monai/visualize/img2tensorboard.py,sha256=NnMcyfIFqX-jD7TBO3Rn02zt5uug79d_7pIIaVD5c-I,9228
 monai/visualize/occlusion_sensitivity.py,sha256=OQHEJLyIhB8zWqQsfKaX-1kvCjWFVYtLfS4dFC0nKFI,18160
 monai/visualize/utils.py,sha256=B-MhTVs7sQbIqYS3yPnpBwPw2K82rE2PBtGIfpwZtWM,9894
 monai/visualize/visualizer.py,sha256=qckyaMZCbezYUwE20k5yc-Pb7UozVavMDbrmyQwfYHY,1377
-monai_weekly-1.4.dev2429.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-monai_weekly-1.4.dev2429.dist-info/METADATA,sha256=WWT3XI4Ne-JSYF6Qw9VxhXUUxkVAy8_m-JwlxsKgJbQ,10953
-monai_weekly-1.4.dev2429.dist-info/WHEEL,sha256=rWxmBtp7hEUqVLOnTaDOPpR-cZpCDkzhhcBce-Zyd5k,91
-monai_weekly-1.4.dev2429.dist-info/top_level.txt,sha256=UaNwRzLGORdus41Ip446s3bBfViLkdkDsXDo34J2P44,6
-monai_weekly-1.4.dev2429.dist-info/RECORD,,
+monai_weekly-1.4.dev2431.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+monai_weekly-1.4.dev2431.dist-info/METADATA,sha256=RQqh6NocBMeoO3k6i4D9NlwSrif431KY-e92S9I174k,10953
+monai_weekly-1.4.dev2431.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
+monai_weekly-1.4.dev2431.dist-info/top_level.txt,sha256=UaNwRzLGORdus41Ip446s3bBfViLkdkDsXDo34J2P44,6
+monai_weekly-1.4.dev2431.dist-info/RECORD,,

{monai_weekly-1.4.dev2429.dist-info → monai_weekly-1.4.dev2431.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (71.0.4)
+Generator: setuptools (72.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any