moducomp 0.7.4__py3-none-any.whl → 0.7.5__py3-none-any.whl

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Files changed (7) hide show
  1. moducomp/__init__.py +1 -1
  2. moducomp/moducomp.py +1 -1
  3. {moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/METADATA +2 -2
  4. {moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/RECORD +7 -7
  5. {moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/WHEEL +0 -0
  6. {moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/entry_points.txt +0 -0
  7. {moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/licenses/LICENSE.txt +0 -0
moducomp/__init__.py CHANGED
@@ -2,7 +2,7 @@
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  moducomp: metabolic module completeness and complementarity for microbiomes.
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  """
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- __version__ = "0.7.4"
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+ __version__ = "0.7.5"
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  __author__ = "Juan C. Villada"
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  __email__ = "jvillada@lbl.gov"
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  __title__ = "moducomp"
moducomp/moducomp.py CHANGED
@@ -3285,7 +3285,7 @@ def test(
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  help="Number of CPU cores to use for the test run.",
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  ),
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  calculate_complementarity: int = typer.Option(
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- 0,
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+ 2,
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  "--calculate-complementarity",
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  "-c",
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  help="Complementarity size to compute during the test (0 disables).",
{moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: moducomp
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- Version: 0.7.4
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+ Version: 0.7.5
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  Summary: moducomp: metabolic module completeness and complementarity for microbiomes.
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  Keywords: bioinformatics,microbiome,metabolic,kegg,genomics
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  Author-email: "Juan C. Villada" <jvillada@lbl.gov>
@@ -74,7 +74,7 @@ If `EGGNOG_DATA_DIR` is not set, `moducomp download-eggnog-data` defaults to `${
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  Small test data sets ship with `moducomp`. After installation you can confirm the pipeline by running:
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  ```bash
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- moducomp test --ncpus 16 --eggnog-data-dir "$EGGNOG_DATA_DIR"
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+ moducomp test --ncpus 16 --calculate-complementarity 2 --eggnog-data-dir "$EGGNOG_DATA_DIR"
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  ```
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  ### Developer install (Pixi)
{moducomp-0.7.4.dist-info → moducomp-0.7.5.dist-info}/RECORD RENAMED
@@ -1,11 +1,11 @@
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- moducomp/__init__.py,sha256=mOte9bMF4ibE3SUH5SvrENq_HJ-s71cigHUXFm4S2_k,658
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+ moducomp/__init__.py,sha256=aKx8EsfDpCGUzX-hVJ6trsVopBH6EQoY5Dq05yBEXGE,658
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  moducomp/__main__.py,sha256=1O2pv6IGjUgqnbqsiMLtVqjxWQpRtZUjp8LDljZ1bsI,185
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- moducomp/moducomp.py,sha256=5JM1dlvHUfh3X2HgOrKNdpxUBhT2tdpfSjT6AbkJTXA,139003
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+ moducomp/moducomp.py,sha256=YEvkCq9IWTeWsoP2yaNgxW_n_HiUMis4YCOEAx0rE9A,139003
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  moducomp/data/test_genomes/IMG2562617132.faa,sha256=gZPh-08pMRdAWJRr3__TbnU1F68CdkDb3gxtpaCLTTc,356863
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  moducomp/data/test_genomes/IMG2568526683.faa,sha256=PxFJwe-68UGw7il1hGlNhZt4-2WzzxXxGE1GTskDnow,343109
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  moducomp/data/test_genomes/IMG2740892217.faa,sha256=WsId4sIPxENbqF6tYFouAgDCy6T0SXNY6TywxBNe-3E,548954
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- moducomp-0.7.4.dist-info/entry_points.txt,sha256=dwt0_w7Ex9p1vhfp2fl4WXJLBh50u9fXTRNlAOJkAd4,114
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- moducomp-0.7.4.dist-info/licenses/LICENSE.txt,sha256=pt0cfIq9Wop21KDZYyQgP0M1YWYvKG0PomA5cUDC4TI,1536
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- moducomp-0.7.4.dist-info/WHEEL,sha256=_2ozNFCLWc93bK4WKHCO-eDUENDlo-dgc9cU3qokYO4,82
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- moducomp-0.7.4.dist-info/METADATA,sha256=X4WkCzidVAi9rEoUsGzbXn8Z4CcNdYQHCVGqBDqaUcQ,10444
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- moducomp-0.7.4.dist-info/RECORD,,
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+ moducomp-0.7.5.dist-info/entry_points.txt,sha256=dwt0_w7Ex9p1vhfp2fl4WXJLBh50u9fXTRNlAOJkAd4,114
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+ moducomp-0.7.5.dist-info/licenses/LICENSE.txt,sha256=pt0cfIq9Wop21KDZYyQgP0M1YWYvKG0PomA5cUDC4TI,1536
9
+ moducomp-0.7.5.dist-info/WHEEL,sha256=_2ozNFCLWc93bK4WKHCO-eDUENDlo-dgc9cU3qokYO4,82
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+ moducomp-0.7.5.dist-info/METADATA,sha256=f_6jUunmvOKsiHaAQC0g-0BO5Kh7PD-PAkUNdeMGUpw,10474
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+ moducomp-0.7.5.dist-info/RECORD,,