moducomp 0.6.0__py3-none-any.whl
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- moducomp/__init__.py +27 -0
- moducomp/cli.py +3318 -0
- moducomp-0.6.0.dist-info/METADATA +252 -0
- moducomp-0.6.0.dist-info/RECORD +7 -0
- moducomp-0.6.0.dist-info/WHEEL +4 -0
- moducomp-0.6.0.dist-info/entry_points.txt +2 -0
- moducomp-0.6.0.dist-info/licenses/LICENSE.txt +28 -0
moducomp/__init__.py
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"""
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moducomp: Metabolic module completeness of genomes and metabolic complementarity in microbiomes
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This module provides a comprehensive bioinformatics pipeline for analyzing metabolic
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module completeness in microbial genomes and identifying complementarity patterns
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in microbial communities.
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Key Features:
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- Protein annotation using eggNOG-mapper to obtain KO (KEGG Orthology) terms
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- Mapping of KO terms to KEGG metabolic modules using KPCT
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- Parallel processing support for improved performance
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- Module completeness analysis for individual genomes
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- Complementarity analysis for N-member genome combinations
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- Protein-level tracking for module completion
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Author: Juan C. Villada - US DOE Joint Genome Institute - Lawrence Berkeley National Lab
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License: See LICENSE.txt
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Version: See pyproject.toml for current version
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"""
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__version__ = "0.6.0"
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__author__ = "Juan C. Villada"
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__email__ = "jvillada@lbl.gov"
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from .cli import app
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__all__ = ["app"]
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