moderne-visualizations-misc 0.71.2__py3-none-any.whl → 0.73.0__py3-none-any.whl

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Files changed (12) hide show
  1. moderne_visualizations_misc/composite_recipe_results_sankey.ipynb +2 -2
  2. moderne_visualizations_misc/cyclomatic_complexity_heatmap.ipynb +4199 -0
  3. moderne_visualizations_misc/cyclomatic_complexity_risk_matrix.ipynb +2041 -0
  4. moderne_visualizations_misc/dependency_vulnerabilities.ipynb +5 -1311
  5. moderne_visualizations_misc/images/cyclomatic_complexity_heatmap.300.png +0 -0
  6. moderne_visualizations_misc/images/cyclomatic_complexity_risk_matrix.300.png +0 -0
  7. moderne_visualizations_misc/specs/cyclomatic_complexity_heatmap.yml +30 -0
  8. moderne_visualizations_misc/specs/cyclomatic_complexity_risk_matrix.yml +30 -0
  9. {moderne_visualizations_misc-0.71.2.dist-info → moderne_visualizations_misc-0.73.0.dist-info}/METADATA +1 -1
  10. {moderne_visualizations_misc-0.71.2.dist-info → moderne_visualizations_misc-0.73.0.dist-info}/RECORD +12 -6
  11. {moderne_visualizations_misc-0.71.2.dist-info → moderne_visualizations_misc-0.73.0.dist-info}/WHEEL +0 -0
  12. {moderne_visualizations_misc-0.71.2.dist-info → moderne_visualizations_misc-0.73.0.dist-info}/top_level.txt +0 -0
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- "source": [
1143
- "import pandas as pd\n",
1144
- "import warnings\n",
1145
- "import plotly.express as px\n",
1146
- "import code_data_science.data_table as dt\n",
1147
- "\n",
1148
- "warnings.simplefilter(\"ignore\")\n",
1149
- "\n",
1150
- "df = dt.read_csv(\"../samples/dependency_vulnerabilities.csv\")\n",
1151
- "\n",
1152
- "df[\"repositoryWithBranch\"] = df[\"repositoryPath\"] + \"/\" + df[\"repositoryBranch\"]\n",
1153
- "\n",
1154
- "# Filter the data frame to only include rows where repositoryWithBranch contain\n",
1155
- "# a term in the repository_filter (case insensitive)\n",
1156
- "if len(repository_filter) > 0:\n",
1157
- " df = df[\n",
1158
- " df[\"repositoryWithBranch\"].str.contains(\"|\".join(repository_filter), case=False)\n",
1159
- " ]\n",
1160
- "\n",
1161
- "\n",
1162
- "def create_bar_plot(df_plot):\n",
1163
- " if df_plot is None:\n",
1164
- " df_plot = pd.DataFrame(\n",
1165
- " {\n",
1166
- " \"Type of version required to fix vulnerability\": [\n",
1167
- " \"Patch\",\n",
1168
- " \"Minor\",\n",
1169
- " \"Major\",\n",
1170
- " \"No fixed version\",\n",
1171
- " ],\n",
1172
- " \"Low\": 0,\n",
1173
- " \"Moderate\": 0,\n",
1174
- " \"High\": 0,\n",
1175
- " \"Critical\": 0,\n",
1176
- " \"Critical %\": 0,\n",
1177
- " \"High %\": 0,\n",
1178
- " \"Moderate %\": 0,\n",
1179
- " \"Low %\": 0,\n",
1180
- " \"Total\": 0,\n",
1181
- " }\n",
1182
- " )\n",
1183
- "\n",
1184
- " fig = px.bar(\n",
1185
- " df_plot,\n",
1186
- " x=\"Type of version required to fix vulnerability\",\n",
1187
- " y=[\"Critical\", \"High\", \"Moderate\", \"Low\"],\n",
1188
- " color_discrete_map={\n",
1189
- " \"Low\": \"#52BBA0\",\n",
1190
- " \"Moderate\": \"#FEE968\",\n",
1191
- " \"High\": \"#FABA49\",\n",
1192
- " \"Critical\": \"#FF5B5B\",\n",
1193
- " },\n",
1194
- " barmode=\"stack\",\n",
1195
- " hover_name=\"Type of version required to fix vulnerability\",\n",
1196
- " hover_data={\n",
1197
- " \"Critical %\": True,\n",
1198
- " \"High %\": True,\n",
1199
- " \"Moderate %\": True,\n",
1200
- " \"Low %\": True,\n",
1201
- " },\n",
1202
- " labels={\"variable\": \"Severity\"},\n",
1203
- " )\n",
1204
- "\n",
1205
- " # Set the axis labels and title\n",
1206
- " fig.update_layout(\n",
1207
- " xaxis={\"title\": \"Type of version required to fix vulnerability\"},\n",
1208
- " yaxis={\"title\": \"Vulnerability count\"},\n",
1209
- " margin=dict(l=0, r=0, t=30, b=0),\n",
1210
- " )\n",
1211
- " return fig\n",
1212
- "\n",
1213
- "\n",
1214
- "# Exit early if there are no stack traces and render a plot with a message\n",
1215
- "if len(df) == 0:\n",
1216
- " fig = create_bar_plot(None)\n",
1217
- " fig.update_yaxes(range=[0, 10])\n",
1218
- " fig.show(render=\"plotly_mimetype\")\n",
1219
- "else:\n",
1220
- "\n",
1221
- " def get_semver_fix(version, fixed_version):\n",
1222
- " \"\"\"\n",
1223
- " looks at current version and fixed version and determines if the fix is a major, minor, patch version, or no fix\n",
1224
- " \"\"\"\n",
1225
- " version_components = version.split(\".\")\n",
1226
- " fixed_components = fixed_version.split(\".\")\n",
1227
- "\n",
1228
- " # if fixed version is empty, return \"No fixed version\"\n",
1229
- " if fixed_version == \"\":\n",
1230
- " return \"No fixed version\"\n",
1231
- "\n",
1232
- " if len(version_components) < 3:\n",
1233
- " # fill in the missing version components with 0\n",
1234
- " for i in range(3 - len(version_components)):\n",
1235
- " version_components.append(\"0\")\n",
1236
- " if len(fixed_components) < 3:\n",
1237
- " # fill in the missing version components with 0\n",
1238
- " for i in range(3 - len(fixed_components)):\n",
1239
- " fixed_components.append(\"0\")\n",
1240
- "\n",
1241
- " elif version_components[0] != fixed_components[0]:\n",
1242
- " return \"Major\"\n",
1243
- " elif version_components[1] != fixed_components[1]:\n",
1244
- " return \"Minor\"\n",
1245
- " elif version_components[2] != fixed_components[2]:\n",
1246
- " return \"Patch\"\n",
1247
- " else:\n",
1248
- " return \"Unknown\"\n",
1249
- "\n",
1250
- " # drop unnecessary columns\n",
1251
- " df = df.drop(\n",
1252
- " columns=[\n",
1253
- " \"repositoryOrigin\",\n",
1254
- " \"repositoryPath\",\n",
1255
- " \"repositoryBranch\",\n",
1256
- " \"repositoryWithBranch\",\n",
1257
- " \"cve\",\n",
1258
- " \"groupId\",\n",
1259
- " \"artifactId\",\n",
1260
- " \"summary\",\n",
1261
- " \"depth\",\n",
1262
- " ]\n",
1263
- " )\n",
1264
- "\n",
1265
- " # fill NaN values with empty string\n",
1266
- " df[\"fixedVersion\"] = df[\"fixedVersion\"].fillna(\"\")\n",
1267
- " df[\"version\"] = df[\"version\"].fillna(\"\")\n",
1268
- " # make sure version and fixedVersion is a string\n",
1269
- " df[\"fixedVersion\"] = df[\"fixedVersion\"].astype(str)\n",
1270
- " df[\"version\"] = df[\"version\"].astype(str)\n",
1271
- "\n",
1272
- " # add column 'semverFix' to dataframe\n",
1273
- " df[\"semverFix\"] = df.apply(\n",
1274
- " lambda x: get_semver_fix(x[\"version\"], x[\"fixedVersion\"]), axis=1\n",
1275
- " )\n",
1276
- " # count the occurrences of each semver fix\n",
1277
- " semverFix_counts = df[\"semverFix\"].value_counts()\n",
1278
- "\n",
1279
- " # sort the semver fixes in desired order\n",
1280
- " desired_order = [\"Patch\", \"Minor\", \"Major\", \"No fixed version\"]\n",
1281
- " semverFix_counts = semverFix_counts.reindex(desired_order)\n",
1282
- "\n",
1283
- " # count the number severity levels for each semver fix\n",
1284
- " critical_count = df[df[\"severity\"] == \"CRITICAL\"][\"semverFix\"].value_counts()\n",
1285
- " critical_count = critical_count.reindex(desired_order)\n",
1286
- "\n",
1287
- " high_count = df[df[\"severity\"] == \"HIGH\"][\"semverFix\"].value_counts()\n",
1288
- " high_count = high_count.reindex(desired_order)\n",
1289
- "\n",
1290
- " moderate_count = df[df[\"severity\"] == \"MODERATE\"][\"semverFix\"].value_counts()\n",
1291
- " moderate_count = moderate_count.reindex(desired_order)\n",
1292
- "\n",
1293
- " low_count = df[df[\"severity\"] == \"LOW\"][\"semverFix\"].value_counts()\n",
1294
- " low_count = low_count.reindex(desired_order)\n",
1295
- "\n",
1296
- " # Create a DataFrame with the data\n",
1297
- " df_plot = pd.DataFrame(\n",
1298
- " {\n",
1299
- " \"Type of version required to fix vulnerability\": semverFix_counts.index,\n",
1300
- " \"Low\": low_count,\n",
1301
- " \"Moderate\": moderate_count,\n",
1302
- " \"High\": high_count,\n",
1303
- " \"Critical\": critical_count,\n",
1304
- " }\n",
1305
- " )\n",
1306
- "\n",
1307
- " # Calculate the total count for each bar\n",
1308
- " df_plot[\"Total\"] = df_plot[[\"Critical\", \"High\", \"Moderate\", \"Low\"]].sum(axis=1)\n",
1309
- "\n",
1310
- " # Calculate the percentage of the total for each severity level\n",
1311
- " df_plot[\"Critical %\"] = (\n",
1312
- " (df_plot[\"Critical\"] / df_plot[\"Total\"] * 100).fillna(0).round(1)\n",
1313
- " )\n",
1314
- " df_plot[\"High %\"] = (df_plot[\"High\"] / df_plot[\"Total\"] * 100).fillna(0).round(1)\n",
1315
- " df_plot[\"Moderate %\"] = (\n",
1316
- " (df_plot[\"Moderate\"] / df_plot[\"Total\"] * 100).fillna(0).round(1)\n",
1317
- " )\n",
1318
- " df_plot[\"Low %\"] = (df_plot[\"Low\"] / df_plot[\"Total\"] * 100).fillna(0).round(1)\n",
1319
- "\n",
1320
- " fig = create_bar_plot(df_plot)\n",
1321
- "\n",
1322
- " # Set the y-axis range\n",
1323
- " fig.update_traces(width=0.33, textposition=\"auto\")\n",
1324
- "\n",
1325
- " # Show the figure\n",
1326
- " fig.show(render=\"plotly_mimetype\")"
1327
- ]
20
+ "outputs": [],
21
+ "source": "import pandas as pd\nimport warnings\nimport plotly.graph_objects as go\nimport code_data_science.data_table as dt\n\nwarnings.simplefilter(\"ignore\")\n\ndf = dt.read_csv(\"../samples/dependency_vulnerabilities.csv\")\n\ndf[\"repositoryWithBranch\"] = df[\"repositoryPath\"] + \"/\" + df[\"repositoryBranch\"]\n\n# Filter the data frame to only include rows where repositoryWithBranch contain\n# a term in the repository_filter (case insensitive)\nif len(repository_filter) > 0:\n df = df[\n df[\"repositoryWithBranch\"].str.contains(\"|\".join(repository_filter), case=False)\n ]\n\n\ndef create_bar_plot(df_direct, df_transitive):\n if df_direct is None or df_transitive is None:\n # Create empty dataframes with the correct structure\n fix_types = [\"Patch\", \"Minor\", \"Major\", \"No fixed version\"]\n df_direct = pd.DataFrame({\n \"Type\": fix_types,\n \"Low\": [0] * 4,\n \"Moderate\": [0] * 4,\n \"High\": [0] * 4,\n \"Critical\": [0] * 4,\n })\n df_transitive = pd.DataFrame({\n \"Type\": fix_types,\n \"Low\": [0] * 4,\n \"Moderate\": [0] * 4,\n \"High\": [0] * 4,\n \"Critical\": [0] * 4,\n })\n\n fig = go.Figure()\n \n # Define colors for severity levels\n colors = {\n \"Critical\": \"#FF5B5B\",\n \"High\": \"#FABA49\",\n \"Moderate\": \"#FEE968\",\n \"Low\": \"#52BBA0\"\n }\n \n # Calculate totals for percentage calculations\n df_direct[\"Total\"] = df_direct[[\"Critical\", \"High\", \"Moderate\", \"Low\"]].sum(axis=1)\n df_transitive[\"Total\"] = df_transitive[[\"Critical\", \"High\", \"Moderate\", \"Low\"]].sum(axis=1)\n grand_total = df_direct[\"Total\"].sum() + df_transitive[\"Total\"].sum()\n \n # Add traces for direct dependencies\n for i, severity in enumerate([\"Critical\", \"High\", \"Moderate\", \"Low\"]):\n # Calculate percentages for hover\n percentages_direct = []\n for idx in range(len(df_direct)):\n count = df_direct.iloc[idx][severity]\n total_in_category = df_direct.iloc[idx][\"Total\"] + df_transitive.iloc[idx][\"Total\"]\n pct_of_category = (count / total_in_category * 100) if total_in_category > 0 else 0\n pct_of_all = (count / grand_total * 100) if grand_total > 0 else 0\n percentages_direct.append({\n \"category_pct\": round(pct_of_category, 1),\n \"total_pct\": round(pct_of_all, 1)\n })\n \n fig.add_trace(go.Bar(\n name=severity,\n x=df_direct[\"Type\"],\n y=df_direct[severity],\n marker_color=colors[severity],\n legendgroup=severity,\n offsetgroup=\"direct\",\n showlegend=True,\n customdata=percentages_direct,\n hovertemplate=(\n '<b>%{x}</b><br>' +\n f'{severity} (Direct): %{{y}}<br>' +\n 'Percent of %{x}: %{customdata.category_pct}%<br>' +\n 'Percent of all: %{customdata.total_pct}%' +\n '<extra></extra>'\n )\n ))\n \n # Add traces for transitive dependencies\n for i, severity in enumerate([\"Critical\", \"High\", \"Moderate\", \"Low\"]):\n # Calculate percentages for hover\n percentages_transitive = []\n for idx in range(len(df_transitive)):\n count = df_transitive.iloc[idx][severity]\n total_in_category = df_direct.iloc[idx][\"Total\"] + df_transitive.iloc[idx][\"Total\"]\n pct_of_category = (count / total_in_category * 100) if total_in_category > 0 else 0\n pct_of_all = (count / grand_total * 100) if grand_total > 0 else 0\n percentages_transitive.append({\n \"category_pct\": round(pct_of_category, 1),\n \"total_pct\": round(pct_of_all, 1)\n })\n \n fig.add_trace(go.Bar(\n name=f'{severity} ', # Add space to make it different from direct\n x=df_transitive[\"Type\"],\n y=df_transitive[severity],\n marker_color=colors[severity],\n marker_pattern_shape=\"/\",\n legendgroup=severity,\n offsetgroup=\"transitive\",\n showlegend=False, # Hide from legend since we'll use annotations\n customdata=percentages_transitive,\n hovertemplate=(\n '<b>%{x}</b><br>' +\n f'{severity} (Transitive): %{{y}}<br>' +\n 'Percent of %{x}: %{customdata.category_pct}%<br>' +\n 'Percent of all: %{customdata.total_pct}%' +\n '<extra></extra>'\n )\n ))\n \n # Update layout with improved legend\n fig.update_layout(\n xaxis={\"title\": \"Type of version required to fix vulnerability\"},\n yaxis={\"title\": \"Vulnerability count\"},\n barmode='group',\n bargap=0.15,\n bargroupgap=0.05,\n margin=dict(l=0, r=0, t=60, b=60),\n legend=dict(\n orientation=\"v\",\n yanchor=\"top\",\n y=0.95,\n xanchor=\"left\",\n x=1.02,\n title=dict(\n text=\"Severity Level<br><sub>Solid: Direct | Striped: Transitive</sub>\",\n font=dict(size=12)\n )\n ),\n annotations=[\n dict(\n text=\"<b>Dependency Vulnerabilities by Fix Type</b>\",\n xref=\"paper\",\n yref=\"paper\",\n x=0.5,\n y=1.05,\n showarrow=False,\n font=dict(size=14)\n )\n ]\n )\n \n return fig\n\n\n# Exit early if there are no stack traces and render a plot with a message\nif len(df) == 0:\n fig = create_bar_plot(None, None)\n fig.update_yaxes(range=[0, 10])\n fig.show(render=\"plotly_mimetype\")\nelse:\n\n def get_semver_fix(version, fixed_version):\n \"\"\"\n looks at current version and fixed version and determines if the fix is a major, minor, patch version, or no fix\n \"\"\"\n version_components = version.split(\".\")\n fixed_components = fixed_version.split(\".\")\n\n # if fixed version is empty, return \"No fixed version\"\n if fixed_version == \"\":\n return \"No fixed version\"\n\n if len(version_components) < 3:\n # fill in the missing version components with 0\n for i in range(3 - len(version_components)):\n version_components.append(\"0\")\n if len(fixed_components) < 3:\n # fill in the missing version components with 0\n for i in range(3 - len(fixed_components)):\n fixed_components.append(\"0\")\n\n elif version_components[0] != fixed_components[0]:\n return \"Major\"\n elif version_components[1] != fixed_components[1]:\n return \"Minor\"\n elif version_components[2] != fixed_components[2]:\n return \"Patch\"\n else:\n return \"Unknown\"\n\n # drop unnecessary columns except depth which we need\n df = df.drop(\n columns=[\n \"repositoryOrigin\",\n \"repositoryPath\",\n \"repositoryBranch\",\n \"repositoryWithBranch\",\n \"cve\",\n \"groupId\",\n \"artifactId\",\n \"summary\",\n ]\n )\n\n # fill NaN values with empty string\n df[\"fixedVersion\"] = df[\"fixedVersion\"].fillna(\"\")\n df[\"version\"] = df[\"version\"].fillna(\"\")\n # make sure version and fixedVersion is a string\n df[\"fixedVersion\"] = df[\"fixedVersion\"].astype(str)\n df[\"version\"] = df[\"version\"].astype(str)\n\n # add column 'semverFix' to dataframe\n df[\"semverFix\"] = df.apply(\n lambda x: get_semver_fix(x[\"version\"], x[\"fixedVersion\"]), axis=1\n )\n \n # Split into direct and transitive\n df_direct = df[df[\"depth\"] == 0]\n df_transitive = df[df[\"depth\"] != 0]\n \n # Define the order for fix types\n fix_order = [\"Patch\", \"Minor\", \"Major\", \"No fixed version\"]\n \n # Create aggregated data for direct dependencies\n direct_data = []\n for fix_type in fix_order:\n fix_df = df_direct[df_direct[\"semverFix\"] == fix_type]\n severity_counts = fix_df[\"severity\"].value_counts()\n direct_data.append({\n \"Type\": fix_type,\n \"Critical\": severity_counts.get(\"CRITICAL\", 0),\n \"High\": severity_counts.get(\"HIGH\", 0),\n \"Moderate\": severity_counts.get(\"MODERATE\", 0),\n \"Low\": severity_counts.get(\"LOW\", 0)\n })\n df_direct_plot = pd.DataFrame(direct_data)\n \n # Create aggregated data for transitive dependencies\n transitive_data = []\n for fix_type in fix_order:\n fix_df = df_transitive[df_transitive[\"semverFix\"] == fix_type]\n severity_counts = fix_df[\"severity\"].value_counts()\n transitive_data.append({\n \"Type\": fix_type,\n \"Critical\": severity_counts.get(\"CRITICAL\", 0),\n \"High\": severity_counts.get(\"HIGH\", 0),\n \"Moderate\": severity_counts.get(\"MODERATE\", 0),\n \"Low\": severity_counts.get(\"LOW\", 0)\n })\n df_transitive_plot = pd.DataFrame(transitive_data)\n\n fig = create_bar_plot(df_direct_plot, df_transitive_plot)\n\n # Show the figure\n fig.show(render=\"plotly_mimetype\")"
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  "metadata": {
@@ -1348,4 +42,4 @@
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  "nbformat": 4,
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