mobiedantic 0.3.0__py3-none-any.whl → 0.4.1__py3-none-any.whl

mobiedantic/__init__.py

@@ -4,7 +4,15 @@ import json
 from pathlib import Path
 
 from mobiedantic.generated import Dataset as DatasetSchema
-from mobiedantic.generated import ImageDisplay, ImageDisplay1, MergedGrid, Name, Source
+from mobiedantic.generated import (
+    ImageDisplay,
+    ImageDisplay1,
+    MergedGrid,
+    Name,
+    Source,
+    RegionDisplay,
+    RegionDisplay1,
+)
 from mobiedantic.generated import Project as ProjectSchema
 
 
@@ -40,7 +48,7 @@ class Dataset:
             raise ValueError(message)
         with open(dataset_path) as dataset_file:
             data = json.loads(dataset_file.read())
-            self.model = DatasetSchema(**data)
+            self.set_model(DatasetSchema(**data))
 
     def set_model(self, model: DatasetSchema):
         self.model = model
@@ -143,11 +151,37 @@ class Dataset:
             )
         )
 
-    # @classmethod
-    # def create(cls, path: Path, *, is2d: bool) -> "Dataset":
-    #     empty_schema = DatasetSchema(
-    #         is2D=is2d,
-    #     )
+    def add_region_view(
+        self,
+        name: str,
+        map_of_sources: dict[str, list[str]],
+        *,
+        view_name: str = 'default',
+    ) -> None:
+        # create table with single column 'region_id' containing source_names, and save as .tsv inside "tables/<name>" inside dataset folder
+        table = 'region_id\t\n'
+        for source_name in map_of_sources:
+            table += f'{source_name}\t\n'
+        tables_folder = self.path / 'tables' / name
+        tables_folder.mkdir(parents=True, exist_ok=True)
+        table_path = tables_folder / 'default.tsv'
+        with open(table_path, 'w') as table_file:
+            table_file.write(table)
+        # add table source to dataset
+        self.model.sources[name] = Source(
+            {'regions': {'tableData': {'tsv': {'relativePath': f'tables/{name}'}}}}
+        )
+        self.model.views[view_name].sourceDisplays.append(
+            RegionDisplay(
+                regionDisplay=RegionDisplay1(
+                    name=name,
+                    sources=map_of_sources,
+                    tableSource=name,
+                    lut='glasbey',
+                    opacity=0.5,
+                )
+            )
+        )
 
 
 class Project:

mobiedantic/generated.py

@@ -5,7 +5,7 @@
 from __future__ import annotations
 
 from enum import Enum
-from typing import Dict, List, Optional, Union
+from typing import Annotated, Dict, List, Optional, Union
 
 from pydantic import (
     BaseModel,
@@ -1280,6 +1280,6 @@ class Project(BaseModel):
     references: Optional[List[str]] = Field(
         None, description='Publication or other references for this project'
     )
-    specVersion: constr(pattern=r'0\.3\.\d+') = Field(
+    specVersion: Annotated[str, constr(pattern=r'0\.3\.\d+')] = Field(
         ..., description='The MoBIE spec version of this project.'
     )

{mobiedantic-0.3.0.dist-info → mobiedantic-0.4.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: mobiedantic
-Version: 0.3.0
+Version: 0.4.1
 Project-URL: Documentation, https://github.com/fmi-faim/mobiedantic#readme
 Project-URL: Issues, https://github.com/fmi-faim/mobiedantic/issues
 Project-URL: Source, https://github.com/fmi-faim/mobiedantic
@@ -14,12 +14,11 @@ Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Programming Language :: Python :: Implementation :: PyPy
 Requires-Python: >=3.8
 Requires-Dist: pydantic
-Provides-Extra: hatch
-Requires-Dist: hatch-conda<0.6,>=0.5.2; extra == 'hatch'
 Description-Content-Type: text/markdown
 
 # mobiedantic

mobiedantic-0.4.1.dist-info/RECORD

@@ -0,0 +1,6 @@
+mobiedantic/__init__.py,sha256=ok0K4e0IinDNNJyGTp2W5wYMwvkqOuUtOU1gncQNhsw,7910
+mobiedantic/generated.py,sha256=kVdqOvkxJhUgff2dm0LiIVmRvRrmlFJgOfzF8Na7sEA,42215
+mobiedantic-0.4.1.dist-info/METADATA,sha256=YCIKVPRUNMFrcEoPcbNazD8cOLsvCBTGnapjZr7ejZo,1502
+mobiedantic-0.4.1.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+mobiedantic-0.4.1.dist-info/licenses/LICENSE.txt,sha256=Y-HLxetc9ng1nbl4Vpgg7MlEckBFenmRo16hXHxn7tw,1538
+mobiedantic-0.4.1.dist-info/RECORD,,

{mobiedantic-0.3.0.dist-info → mobiedantic-0.4.1.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: hatchling 1.25.0
+Generator: hatchling 1.28.0
 Root-Is-Purelib: true
 Tag: py3-none-any

mobiedantic-0.3.0.dist-info/RECORD

@@ -1,6 +0,0 @@
-mobiedantic/__init__.py,sha256=yAnWVfm-SzSK2PpJqgwOqWDMZYEaF0Hk-jN2tn-qA8A,6802
-mobiedantic/generated.py,sha256=-JO7uJvjE0hpYcXeJrOKiMCayoSWN72vTHh95-I-E5g,42188
-mobiedantic-0.3.0.dist-info/METADATA,sha256=Y0MWYGmWVhLWdwxqI4vjpTZmN6wSQmMjvxz9MDEUtOg,1530
-mobiedantic-0.3.0.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
-mobiedantic-0.3.0.dist-info/licenses/LICENSE.txt,sha256=Y-HLxetc9ng1nbl4Vpgg7MlEckBFenmRo16hXHxn7tw,1538
-mobiedantic-0.3.0.dist-info/RECORD,,