misleep 0.3.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- misleep/__init__.py +111 -0
- misleep/__main__.py +16 -0
- misleep/analysis/__init__.py +23 -0
- misleep/analysis/auto_stage.py +158 -0
- misleep/analysis/detection.py +198 -0
- misleep/analysis/features.py +131 -0
- misleep/analysis/models/P30_EEG_F_lightgbm.pkl +0 -0
- misleep/analysis/models/P30_EEG_P_lightgbm.pkl +0 -0
- misleep/analysis/models/__init__.py +0 -0
- misleep/analysis/models/ado_EEG_F_lightgbm.pkl +0 -0
- misleep/analysis/models/ado_EEG_P_lightgbm.pkl +0 -0
- misleep/analysis/models/adult_EEG_F_lightgbm.pkl +0 -0
- misleep/analysis/models/adult_EEG_P_lightgbm.pkl +0 -0
- misleep/analysis/transformer/__init__.py +46 -0
- misleep/analysis/transformer/checkpoints/CausalTransformer_best.pt +0 -0
- misleep/analysis/transformer/checkpoints/__init__.py +0 -0
- misleep/analysis/transformer/configs.py +52 -0
- misleep/analysis/transformer/data.py +362 -0
- misleep/analysis/transformer/inference.py +328 -0
- misleep/analysis/transformer/models.py +220 -0
- misleep/analysis/transformer/preprocessing.py +105 -0
- misleep/config/__init__.py +105 -0
- misleep/config/default_config.ini +38 -0
- misleep/data/__init__.py +13 -0
- misleep/data/annotation.py +114 -0
- misleep/data/midata.py +387 -0
- misleep/gui/__init__.py +23 -0
- misleep/gui/app.py +183 -0
- misleep/gui/config_dialog.py +429 -0
- misleep/gui/dialogs.py +1107 -0
- misleep/gui/event_filters.py +26 -0
- misleep/gui/main_window.py +2699 -0
- misleep/gui/qt_utils.py +277 -0
- misleep/gui/resources/__init__.py +9 -0
- misleep/gui/resources/entire_logo.png +0 -0
- misleep/gui/resources/logo.png +0 -0
- misleep/gui/resources/misleep.ico +0 -0
- misleep/gui/resources/misleep.qrc +7 -0
- misleep/gui/resources/misleep_rc.py +1324 -0
- misleep/gui/spec_window.py +187 -0
- misleep/gui/style.py +994 -0
- misleep/gui/uis/SWA_detect_dialog.ui +181 -0
- misleep/gui/uis/SWA_detect_dialog_ui.py +176 -0
- misleep/gui/uis/__init__.py +6 -0
- misleep/gui/uis/about.ui +88 -0
- misleep/gui/uis/about_ui.py +80 -0
- misleep/gui/uis/auto_stage_causalTransformer_dialog.ui +77 -0
- misleep/gui/uis/auto_stage_causalTransformer_dialog_ui.py +90 -0
- misleep/gui/uis/auto_stage_lightGBM_dialog.ui +124 -0
- misleep/gui/uis/auto_stage_lightGBM_dialog_ui.py +124 -0
- misleep/gui/uis/horizontal_line_dialog.ui +166 -0
- misleep/gui/uis/horizontal_line_dialog_ui.py +157 -0
- misleep/gui/uis/label_dialog.ui +65 -0
- misleep/gui/uis/label_dialog_ui.py +72 -0
- misleep/gui/uis/main_window.ui +871 -0
- misleep/gui/uis/main_window_ui.py +616 -0
- misleep/gui/uis/save_data_dialog.ui +95 -0
- misleep/gui/uis/save_data_dialog_ui.py +98 -0
- misleep/gui/uis/spec_window.ui +109 -0
- misleep/gui/uis/spec_window_ui.py +103 -0
- misleep/gui/uis/spindle_detect_dialog.ui +202 -0
- misleep/gui/uis/spindle_detect_dialog_ui.py +194 -0
- misleep/gui/uis/state_spectral_dialog.ui +240 -0
- misleep/gui/uis/state_spectral_dialog_ui.py +204 -0
- misleep/gui/uis/transfer_result_dialog.ui +104 -0
- misleep/gui/uis/transfer_result_dialog_ui.py +94 -0
- misleep/gui/workers.py +69 -0
- misleep/io/__init__.py +68 -0
- misleep/io/annotation.py +367 -0
- misleep/io/array.py +209 -0
- misleep/io/base.py +174 -0
- misleep/io/edf.py +109 -0
- misleep/io/mat.py +189 -0
- misleep/logger.py +79 -0
- misleep/preprocessing/__init__.py +23 -0
- misleep/preprocessing/artifacts.py +76 -0
- misleep/preprocessing/filtering.py +94 -0
- misleep/preprocessing/segment.py +59 -0
- misleep/preprocessing/spectral.py +169 -0
- misleep/utils/__init__.py +45 -0
- misleep/utils/annotation.py +130 -0
- misleep/utils/entropy.py +135 -0
- misleep/utils/misc.py +69 -0
- misleep/utils/time_utils.py +61 -0
- misleep/viz/__init__.py +12 -0
- misleep/viz/hypnogram.py +48 -0
- misleep/viz/signals.py +51 -0
- misleep/viz/spectral.py +98 -0
- misleep-0.3.0.dist-info/METADATA +249 -0
- misleep-0.3.0.dist-info/RECORD +94 -0
- misleep-0.3.0.dist-info/WHEEL +5 -0
- misleep-0.3.0.dist-info/entry_points.txt +15 -0
- misleep-0.3.0.dist-info/licenses/LICENSE +29 -0
- misleep-0.3.0.dist-info/top_level.txt +1 -0
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<?xml version="1.0" encoding="UTF-8"?>
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<ui version="4.0">
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<class>TransferResultDialog</class>
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<widget class="QDialog" name="TransferResultDialog">
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<property name="geometry">
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<rect>
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<x>0</x>
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<y>0</y>
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<width>271</width>
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<height>216</height>
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</rect>
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</property>
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<property name="windowTitle">
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<string>Dialog</string>
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</property>
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<property name="windowIcon">
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<iconset resource="../resources/misleep.qrc">
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<normaloff>:/logo/logo.png</normaloff>:/logo/logo.png</iconset>
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</property>
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<layout class="QGridLayout" name="gridLayout_2">
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<item row="1" column="0">
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<widget class="QPushButton" name="OKBt">
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<property name="text">
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<string>OK</string>
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</property>
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</widget>
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</item>
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<item row="1" column="1">
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<widget class="QPushButton" name="CancelBt">
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<property name="text">
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<string>Cancel</string>
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</property>
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</widget>
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</item>
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<item row="0" column="0" colspan="2">
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<widget class="QGroupBox" name="groupBox">
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<property name="title">
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<string>Transfer result options</string>
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</property>
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<layout class="QGridLayout" name="gridLayout">
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<item row="3" column="0">
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<widget class="QDateTimeEdit" name="TransferStartTimeEdit">
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<property name="displayFormat">
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<string>yyyy/MM/dd HH:mm:ss</string>
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</property>
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</widget>
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</item>
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<item row="0" column="0">
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<widget class="QCheckBox" name="ResetTimeCheckBox">
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<property name="text">
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<string>Reset acquisition time</string>
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</property>
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</widget>
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</item>
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<item row="1" column="1">
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<spacer name="horizontalSpacer">
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<property name="orientation">
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<enum>Qt::Horizontal</enum>
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</property>
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<property name="sizeHint" stdset="0">
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<size>
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<width>40</width>
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<height>20</height>
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</size>
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</property>
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</spacer>
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</item>
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<item row="1" column="0">
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<widget class="QDateTimeEdit" name="ACTimeEditor">
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<property name="displayFormat">
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<string>yyyy/MM/dd HH:mm:ss</string>
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</property>
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</widget>
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</item>
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<item row="3" column="1">
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<spacer name="horizontalSpacer_2">
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<property name="orientation">
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<enum>Qt::Horizontal</enum>
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</property>
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<property name="sizeHint" stdset="0">
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<size>
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<width>40</width>
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<height>20</height>
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</size>
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</property>
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</spacer>
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</item>
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<item row="2" column="0">
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<widget class="QCheckBox" name="ResetTransferStartTimeCheckBox">
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<property name="text">
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<string>Reset transfer start time</string>
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</property>
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</widget>
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</item>
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</layout>
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</widget>
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</item>
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</layout>
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</widget>
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<resources>
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<include location="../resources/misleep.qrc"/>
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</resources>
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<connections/>
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</ui>
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# -*- coding: utf-8 -*-
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################################################################################
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## Form generated from reading UI file 'transfer_result_dialog.ui'
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##
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## Created by: Qt User Interface Compiler version 6.11.1
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##
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## WARNING! All changes made in this file will be lost when recompiling UI file!
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################################################################################
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from PySide6.QtCore import (QCoreApplication, QDate, QDateTime, QLocale,
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QMetaObject, QObject, QPoint, QRect,
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QSize, QTime, QUrl, Qt)
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from PySide6.QtGui import (QBrush, QColor, QConicalGradient, QCursor,
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QFont, QFontDatabase, QGradient, QIcon,
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QImage, QKeySequence, QLinearGradient, QPainter,
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QPalette, QPixmap, QRadialGradient, QTransform)
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from PySide6.QtWidgets import (QApplication, QCheckBox, QDateTimeEdit, QDialog,
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QGridLayout, QGroupBox, QPushButton, QSizePolicy,
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QSpacerItem, QWidget)
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from misleep.gui.resources import misleep_rc
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class Ui_TransferResultDialog(object):
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def setupUi(self, TransferResultDialog):
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if not TransferResultDialog.objectName():
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TransferResultDialog.setObjectName(u"TransferResultDialog")
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TransferResultDialog.resize(271, 216)
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icon = QIcon()
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icon.addFile(u":/logo/logo.png", QSize(), QIcon.Mode.Normal, QIcon.State.Off)
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TransferResultDialog.setWindowIcon(icon)
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self.gridLayout_2 = QGridLayout(TransferResultDialog)
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self.gridLayout_2.setObjectName(u"gridLayout_2")
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self.OKBt = QPushButton(TransferResultDialog)
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self.OKBt.setObjectName(u"OKBt")
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self.gridLayout_2.addWidget(self.OKBt, 1, 0, 1, 1)
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self.CancelBt = QPushButton(TransferResultDialog)
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self.CancelBt.setObjectName(u"CancelBt")
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self.gridLayout_2.addWidget(self.CancelBt, 1, 1, 1, 1)
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self.groupBox = QGroupBox(TransferResultDialog)
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self.groupBox.setObjectName(u"groupBox")
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self.gridLayout = QGridLayout(self.groupBox)
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self.gridLayout.setObjectName(u"gridLayout")
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self.TransferStartTimeEdit = QDateTimeEdit(self.groupBox)
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self.TransferStartTimeEdit.setObjectName(u"TransferStartTimeEdit")
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self.gridLayout.addWidget(self.TransferStartTimeEdit, 3, 0, 1, 1)
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self.ResetTimeCheckBox = QCheckBox(self.groupBox)
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self.ResetTimeCheckBox.setObjectName(u"ResetTimeCheckBox")
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self.gridLayout.addWidget(self.ResetTimeCheckBox, 0, 0, 1, 1)
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self.horizontalSpacer = QSpacerItem(40, 20, QSizePolicy.Policy.Expanding, QSizePolicy.Policy.Minimum)
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self.gridLayout.addItem(self.horizontalSpacer, 1, 1, 1, 1)
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self.ACTimeEditor = QDateTimeEdit(self.groupBox)
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self.ACTimeEditor.setObjectName(u"ACTimeEditor")
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self.gridLayout.addWidget(self.ACTimeEditor, 1, 0, 1, 1)
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self.horizontalSpacer_2 = QSpacerItem(40, 20, QSizePolicy.Policy.Expanding, QSizePolicy.Policy.Minimum)
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self.gridLayout.addItem(self.horizontalSpacer_2, 3, 1, 1, 1)
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self.ResetTransferStartTimeCheckBox = QCheckBox(self.groupBox)
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self.ResetTransferStartTimeCheckBox.setObjectName(u"ResetTransferStartTimeCheckBox")
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self.gridLayout.addWidget(self.ResetTransferStartTimeCheckBox, 2, 0, 1, 1)
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self.gridLayout_2.addWidget(self.groupBox, 0, 0, 1, 2)
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self.retranslateUi(TransferResultDialog)
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QMetaObject.connectSlotsByName(TransferResultDialog)
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# setupUi
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def retranslateUi(self, TransferResultDialog):
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TransferResultDialog.setWindowTitle(QCoreApplication.translate("TransferResultDialog", u"Dialog", None))
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self.OKBt.setText(QCoreApplication.translate("TransferResultDialog", u"OK", None))
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self.CancelBt.setText(QCoreApplication.translate("TransferResultDialog", u"Cancel", None))
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self.groupBox.setTitle(QCoreApplication.translate("TransferResultDialog", u"Transfer result options", None))
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self.TransferStartTimeEdit.setDisplayFormat(QCoreApplication.translate("TransferResultDialog", u"yyyy/MM/dd HH:mm:ss", None))
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self.ResetTimeCheckBox.setText(QCoreApplication.translate("TransferResultDialog", u"Reset acquisition time", None))
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self.ACTimeEditor.setDisplayFormat(QCoreApplication.translate("TransferResultDialog", u"yyyy/MM/dd HH:mm:ss", None))
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self.ResetTransferStartTimeCheckBox.setText(QCoreApplication.translate("TransferResultDialog", u"Reset transfer start time", None))
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# retranslateUi
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misleep/gui/workers.py
ADDED
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# -*- coding: UTF-8 -*-
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"""Background worker threads for the GUI.
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These QThread subclasses keep file I/O off the UI thread so the interface
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stays responsive while saving large files.
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"""
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from PySide6.QtCore import QThread
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from misleep.io.annotation import save_misleep_anno
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from misleep.io.base import write_signal
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from misleep.io.mat import load_mat
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class SaveThread(QThread):
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"""Save files (annotation, data, configuration) in a background thread.
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Parameters
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----------
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parent : QObject, optional
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file : ANY, optional
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Object to save: a ``[mianno, midata]`` pair for annotations, a
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``MiData`` for data, or a ConfigParser for configuration.
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file_path : str, optional
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Destination path.
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"""
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def __init__(self, parent=None, file=None, file_path=None):
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super().__init__(parent)
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self.file = file
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self.file_path = file_path
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def save_config(self):
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"""Save a ConfigParser to ``self.file_path``."""
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with open(self.file_path, "w", encoding="utf-8") as config_file:
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self.file.write(config_file)
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def save_anno(self):
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"""Save an annotation; ``self.file`` must be ``[mianno, midata]``."""
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mianno, midata = self.file
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return save_misleep_anno(mianno, midata, self.file_path)
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42
|
+
|
|
43
|
+
def save_data(self):
|
|
44
|
+
"""Save a :class:`MiData` through the registered format writer."""
|
|
45
|
+
midata = self.file
|
|
46
|
+
if midata is None:
|
|
47
|
+
return False
|
|
48
|
+
|
|
49
|
+
write_signal(midata, self.file_path)
|
|
50
|
+
return True
|
|
51
|
+
|
|
52
|
+
|
|
53
|
+
class LoadThread(QThread):
|
|
54
|
+
"""Load data in a background thread.
|
|
55
|
+
|
|
56
|
+
Parameters
|
|
57
|
+
----------
|
|
58
|
+
parent : QObject, optional
|
|
59
|
+
file_path : str, optional
|
|
60
|
+
File to load.
|
|
61
|
+
"""
|
|
62
|
+
|
|
63
|
+
def __init__(self, parent=None, file_path=None):
|
|
64
|
+
super().__init__(parent)
|
|
65
|
+
self.file_path = file_path
|
|
66
|
+
|
|
67
|
+
def load_mat_data(self):
|
|
68
|
+
"""Load data from a ``.mat`` file."""
|
|
69
|
+
return load_mat(data_path=self.file_path)
|
misleep/io/__init__.py
ADDED
|
@@ -0,0 +1,68 @@
|
|
|
1
|
+
# -*- coding: UTF-8 -*-
|
|
2
|
+
"""Input/output module.
|
|
3
|
+
|
|
4
|
+
Public API:
|
|
5
|
+
|
|
6
|
+
* :func:`misleep.io.mat.load_mat` / :func:`misleep.io.mat.write_mat`
|
|
7
|
+
* :func:`misleep.io.edf.load_edf` / :func:`misleep.io.edf.write_edf`
|
|
8
|
+
* :func:`misleep.io.annotation.load_misleep_anno` / ``save_misleep_anno``
|
|
9
|
+
* :func:`misleep.io.annotation.transfer_result`
|
|
10
|
+
* :func:`misleep.io.base.load_signal` / ``write_signal`` -- extension dispatch
|
|
11
|
+
"""
|
|
12
|
+
|
|
13
|
+
from .base import (
|
|
14
|
+
MiData,
|
|
15
|
+
MiAnnotation,
|
|
16
|
+
register_signal_reader,
|
|
17
|
+
register_signal_writer,
|
|
18
|
+
load_signal,
|
|
19
|
+
write_signal,
|
|
20
|
+
available_readers,
|
|
21
|
+
available_writers,
|
|
22
|
+
)
|
|
23
|
+
from .mat import load_mat, write_mat
|
|
24
|
+
from .edf import load_edf, write_edf
|
|
25
|
+
from .array import load_npy, load_npz, load_csv, load_tsv, write_npz
|
|
26
|
+
from .annotation import (
|
|
27
|
+
available_annotation_readers,
|
|
28
|
+
load_annotation,
|
|
29
|
+
load_bio_anno,
|
|
30
|
+
load_json_anno,
|
|
31
|
+
load_misleep_anno,
|
|
32
|
+
load_table_anno,
|
|
33
|
+
save_misleep_anno,
|
|
34
|
+
transfer_result,
|
|
35
|
+
)
|
|
36
|
+
|
|
37
|
+
# Register built-in formats
|
|
38
|
+
from . import mat as _mat # noqa: F401 (triggers register_signal_*)
|
|
39
|
+
from . import edf as _edf # noqa: F401
|
|
40
|
+
from . import array as _array # noqa: F401
|
|
41
|
+
|
|
42
|
+
__all__ = [
|
|
43
|
+
"MiData",
|
|
44
|
+
"MiAnnotation",
|
|
45
|
+
"load_mat",
|
|
46
|
+
"write_mat",
|
|
47
|
+
"load_edf",
|
|
48
|
+
"write_edf",
|
|
49
|
+
"load_npy",
|
|
50
|
+
"load_npz",
|
|
51
|
+
"load_csv",
|
|
52
|
+
"load_tsv",
|
|
53
|
+
"write_npz",
|
|
54
|
+
"load_misleep_anno",
|
|
55
|
+
"save_misleep_anno",
|
|
56
|
+
"load_bio_anno",
|
|
57
|
+
"transfer_result",
|
|
58
|
+
"load_annotation",
|
|
59
|
+
"load_json_anno",
|
|
60
|
+
"load_table_anno",
|
|
61
|
+
"available_annotation_readers",
|
|
62
|
+
"load_signal",
|
|
63
|
+
"write_signal",
|
|
64
|
+
"register_signal_reader",
|
|
65
|
+
"register_signal_writer",
|
|
66
|
+
"available_readers",
|
|
67
|
+
"available_writers",
|
|
68
|
+
]
|