microeye 2.3.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- microEye/__init__.py +47 -0
- microEye/_version.py +2 -0
- microEye/analysis/__init__.py +1 -0
- microEye/analysis/checklist_dialog.py +143 -0
- microEye/analysis/cmosMaps.py +228 -0
- microEye/analysis/filters/__init__.py +9 -0
- microEye/analysis/filters/base.py +21 -0
- microEye/analysis/filters/spatial.py +338 -0
- microEye/analysis/filters/temporal.py +76 -0
- microEye/analysis/fitting/__init__.py +0 -0
- microEye/analysis/fitting/fit.py +680 -0
- microEye/analysis/fitting/nena.py +375 -0
- microEye/analysis/fitting/phasor_fit.py +90 -0
- microEye/analysis/fitting/processing.py +317 -0
- microEye/analysis/fitting/psf/__init__.py +6 -0
- microEye/analysis/fitting/psf/extract.py +1129 -0
- microEye/analysis/fitting/psf/rubost_mean.py +150 -0
- microEye/analysis/fitting/psf/spline.py +167 -0
- microEye/analysis/fitting/psf/stats/__init__.py +12 -0
- microEye/analysis/fitting/psf/stats/core.py +295 -0
- microEye/analysis/fitting/psf/stats/curve_fit.py +708 -0
- microEye/analysis/fitting/psf/stats/io.py +104 -0
- microEye/analysis/fitting/psf/stats/slope_fit.py +171 -0
- microEye/analysis/fitting/psf/temp.py +147 -0
- microEye/analysis/fitting/psf/test.py +47 -0
- microEye/analysis/fitting/pyfit3Dcspline/CPU/CPUfunctions.py +657 -0
- microEye/analysis/fitting/pyfit3Dcspline/CPU/CPUmleFit_LM.py +1336 -0
- microEye/analysis/fitting/pyfit3Dcspline/CPU/CPUsplineLib.py +270 -0
- microEye/analysis/fitting/pyfit3Dcspline/CPU/__init__.py +1 -0
- microEye/analysis/fitting/pyfit3Dcspline/GPU/GPUfunctions.py +609 -0
- microEye/analysis/fitting/pyfit3Dcspline/GPU/GPUmleFit_LM_EMCCD.py +1396 -0
- microEye/analysis/fitting/pyfit3Dcspline/GPU/GPUmleFit_LM_sCMOS.py +1426 -0
- microEye/analysis/fitting/pyfit3Dcspline/GPU/GPUsplineLib.py +231 -0
- microEye/analysis/fitting/pyfit3Dcspline/GPU/__init__.py +2 -0
- microEye/analysis/fitting/pyfit3Dcspline/__init__.py +10 -0
- microEye/analysis/fitting/pyfit3Dcspline/constants.py +27 -0
- microEye/analysis/fitting/pyfit3Dcspline/mainfunctions.py +903 -0
- microEye/analysis/fitting/results.py +917 -0
- microEye/analysis/fitting/results_stats.py +251 -0
- microEye/analysis/fitting/tardis.py +209 -0
- microEye/analysis/multi_viewer.py +568 -0
- microEye/analysis/processing/__init__.py +1 -0
- microEye/analysis/processing/frc.py +120 -0
- microEye/analysis/rendering/__init__.py +3 -0
- microEye/analysis/rendering/base.py +452 -0
- microEye/analysis/rendering/cloud.py +215 -0
- microEye/analysis/rendering/core.py +47 -0
- microEye/analysis/rendering/volumetric.py +198 -0
- microEye/analysis/tools/__init__.py +0 -0
- microEye/analysis/tools/kymograms.py +1079 -0
- microEye/analysis/tools/roi_selectors.py +556 -0
- microEye/analysis/utils/__init__.py +3 -0
- microEye/analysis/utils/coordinates.py +18 -0
- microEye/analysis/utils/images.py +68 -0
- microEye/analysis/utils/windows.py +19 -0
- microEye/analysis/viewer/__init__.py +3 -0
- microEye/analysis/viewer/image_options_widget.py +615 -0
- microEye/analysis/viewer/images.py +1225 -0
- microEye/analysis/viewer/layers_widget.py +415 -0
- microEye/analysis/viewer/localizations.py +1304 -0
- microEye/analysis/viewer/psf.py +1003 -0
- microEye/analysis/viewer/volume.py +456 -0
- microEye/hardware/__init__.py +3 -0
- microEye/hardware/cams/__init__.py +29 -0
- microEye/hardware/cams/camera_calibration.py +99 -0
- microEye/hardware/cams/camera_list.py +528 -0
- microEye/hardware/cams/camera_options.py +694 -0
- microEye/hardware/cams/camera_panel.py +941 -0
- microEye/hardware/cams/dummy/__init__.py +1 -0
- microEye/hardware/cams/dummy/dummy_panel.py +759 -0
- microEye/hardware/cams/jobs.py +497 -0
- microEye/hardware/cams/line_profiler.py +99 -0
- microEye/hardware/cams/linescan/IR_Cam.py +474 -0
- microEye/hardware/cams/linescan/__init__.py +1 -0
- microEye/hardware/cams/micam.py +524 -0
- microEye/hardware/cams/pco/__init__.py +58 -0
- microEye/hardware/cams/pco/enums.py +382 -0
- microEye/hardware/cams/pco/pco_cam.py +761 -0
- microEye/hardware/cams/pco/pco_panel.py +477 -0
- microEye/hardware/cams/shortcuts.py +312 -0
- microEye/hardware/cams/thorlabs/__init__.py +1 -0
- microEye/hardware/cams/thorlabs/thorlabs.py +1508 -0
- microEye/hardware/cams/thorlabs/thorlabs_panel.py +850 -0
- microEye/hardware/cams/ueye/__init__.py +1 -0
- microEye/hardware/cams/ueye/ueye_camera.py +1023 -0
- microEye/hardware/cams/ueye/ueye_panel.py +861 -0
- microEye/hardware/cams/vimba/__init__.py +1 -0
- microEye/hardware/cams/vimba/vimba_cam.py +1000 -0
- microEye/hardware/cams/vimba/vimba_panel.py +813 -0
- microEye/hardware/device.py +60 -0
- microEye/hardware/lasers/__init__.py +13 -0
- microEye/hardware/lasers/io_matchbox.py +791 -0
- microEye/hardware/lasers/io_params.py +85 -0
- microEye/hardware/lasers/io_single_laser.py +742 -0
- microEye/hardware/lasers/laser_relay.py +594 -0
- microEye/hardware/mieye/__init__.py +1 -0
- microEye/hardware/mieye/acquisition_manager.py +467 -0
- microEye/hardware/mieye/devices_manager.py +533 -0
- microEye/hardware/mieye/miEye.py +659 -0
- microEye/hardware/misc/__init__.py +0 -0
- microEye/hardware/misc/acquisition_view.py +71 -0
- microEye/hardware/misc/reglo.py +761 -0
- microEye/hardware/misc/temp.py +188 -0
- microEye/hardware/port_config.py +59 -0
- microEye/hardware/protocols/__init__.py +2 -0
- microEye/hardware/protocols/actions.py +402 -0
- microEye/hardware/protocols/actions_items.py +703 -0
- microEye/hardware/protocols/designer.py +244 -0
- microEye/hardware/protocols/scene_manager.py +191 -0
- microEye/hardware/protocols/serialization.py +97 -0
- microEye/hardware/pycromanager/__init__.py +16 -0
- microEye/hardware/pycromanager/core.py +1433 -0
- microEye/hardware/pycromanager/devices.py +461 -0
- microEye/hardware/pycromanager/enums.py +107 -0
- microEye/hardware/pycromanager/headless.py +153 -0
- microEye/hardware/pycromanager/utils.py +34 -0
- microEye/hardware/pycromanager/widgets/__init__.py +5 -0
- microEye/hardware/pycromanager/widgets/bridges.py +407 -0
- microEye/hardware/pycromanager/widgets/headless_manager.py +258 -0
- microEye/hardware/pycromanager/widgets/headless_options.py +224 -0
- microEye/hardware/pycromanager/widgets/pycro_panel.py +455 -0
- microEye/hardware/stages/__init__.py +18 -0
- microEye/hardware/stages/elliptec/__init__.py +5 -0
- microEye/hardware/stages/elliptec/baseDevice.py +314 -0
- microEye/hardware/stages/elliptec/device.py +384 -0
- microEye/hardware/stages/elliptec/deviceID.py +212 -0
- microEye/hardware/stages/elliptec/devicePort.py +379 -0
- microEye/hardware/stages/elliptec/deviceStatus.py +65 -0
- microEye/hardware/stages/elliptec/devicesView.py +706 -0
- microEye/hardware/stages/elliptec/ellDevices.py +134 -0
- microEye/hardware/stages/elliptec/messageUpdater.py +34 -0
- microEye/hardware/stages/elliptec/motorInfo.py +153 -0
- microEye/hardware/stages/elliptec/stage.py +62 -0
- microEye/hardware/stages/elliptec/test.py +139 -0
- microEye/hardware/stages/kinesis/__init__.py +1 -0
- microEye/hardware/stages/kinesis/kdc101/__init__.py +1 -0
- microEye/hardware/stages/kinesis/kdc101/enums.py +1002 -0
- microEye/hardware/stages/kinesis/kdc101/factory.py +171 -0
- microEye/hardware/stages/kinesis/kdc101/kdc101.py +718 -0
- microEye/hardware/stages/kinesis/kinesis.py +776 -0
- microEye/hardware/stages/piezo_concept.py +607 -0
- microEye/hardware/stages/stabilizer.py +785 -0
- microEye/hardware/stages/stage.py +89 -0
- microEye/hardware/widgets/__init__.py +10 -0
- microEye/hardware/widgets/controller.py +246 -0
- microEye/hardware/widgets/devices.py +133 -0
- microEye/hardware/widgets/focusWidget.py +264 -0
- microEye/hardware/widgets/qlist_slider.py +113 -0
- microEye/hardware/widgets/scan_acquisition.py +424 -0
- microEye/icons/1024.png +0 -0
- microEye/icons/128.png +0 -0
- microEye/icons/16.png +0 -0
- microEye/icons/24.png +0 -0
- microEye/icons/256.png +0 -0
- microEye/icons/32.png +0 -0
- microEye/icons/48.png +0 -0
- microEye/icons/512.png +0 -0
- microEye/icons/64.png +0 -0
- microEye/icons/__init__.py +0 -0
- microEye/icons/close.svg +88 -0
- microEye/icons/mieye.png +0 -0
- microEye/icons/min.svg +83 -0
- microEye/icons/viewer.png +0 -0
- microEye/launcher.py +42 -0
- microEye/qt.py +181 -0
- microEye/utils/__init__.py +2 -0
- microEye/utils/enum_encoder.py +10 -0
- microEye/utils/expandable_groupbox.py +93 -0
- microEye/utils/gui_helper.py +457 -0
- microEye/utils/hid/__init__.py +8 -0
- microEye/utils/hid/controller.py +153 -0
- microEye/utils/hid/device.py +63 -0
- microEye/utils/hid/enums.py +140 -0
- microEye/utils/hid/utils.py +58 -0
- microEye/utils/labelled_slider.py +134 -0
- microEye/utils/metadata.py +599 -0
- microEye/utils/metadata_tree.py +718 -0
- microEye/utils/micro_launcher.py +245 -0
- microEye/utils/parameter_tree.py +325 -0
- microEye/utils/pyscripting.py +444 -0
- microEye/utils/retry_exec.py +35 -0
- microEye/utils/start_gui.py +112 -0
- microEye/utils/thread_worker.py +115 -0
- microEye/utils/uImage.py +1512 -0
- microeye-2.3.2.dist-info/METADATA +401 -0
- microeye-2.3.2.dist-info/RECORD +190 -0
- microeye-2.3.2.dist-info/WHEEL +5 -0
- microeye-2.3.2.dist-info/entry_points.txt +2 -0
- microeye-2.3.2.dist-info/licenses/LICENSE +674 -0
- microeye-2.3.2.dist-info/top_level.txt +1 -0
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from collections import deque
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from dataclasses import dataclass
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from enum import Enum, auto
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from typing import Callable, Optional, Union
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import serial
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from pyqtgraph.parametertree import Parameter
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from pyqtgraph.parametertree.parameterTypes import ActionParameter
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from microEye.hardware.port_config import port_config
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from microEye.hardware.stages.kinesis.kdc101 import KDC101Controller
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from microEye.hardware.stages.stage import XYStageParams
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from microEye.qt import QtCore, QtSerialPort, QtWidgets, Signal
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from microEye.utils.parameter_tree import Tree
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from microEye.utils.thread_worker import *
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class KinesisXY(QtCore.QObject):
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'''Class for controlling Two Kinesis Devices as an XY Stage'''
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asyncStarted = Signal()
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asyncFinished = Signal()
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def __init__(self, x_port='COM12', y_port='COM11', parent=None, **kwargs):
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super().__init__(parent=parent)
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self.X = KDC101Controller(portName=x_port)
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self.Y = KDC101Controller(portName=y_port)
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self.min = kwargs.get('min', [0, 0])
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self.max = kwargs.get('max', [25, 25])
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self.center_pos = kwargs.get('center', [17, 13])
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self.prec = 4
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self.busy = False
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@property
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def position(self) -> tuple[float, float]:
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return self.X.position, self.Y.position
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def home(self, is_async=True):
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self.run_async(self.X.home, is_async=is_async)
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self.run_async(self.Y.home, is_async=is_async)
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def center(self, x_center=None, y_center=None, is_async=True):
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'''Move to the center of the stage.'''
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self.move_absolute(
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x_center if x_center is not None else self.center_pos[0],
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y_center if y_center is not None else self.center_pos[1],
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is_async=is_async,
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)
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def move_absolute(self, x, y, force=False, is_async=True):
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x = round(max(self.min[0], min(self.max[0], x)), self.prec)
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y = round(max(self.min[1], min(self.max[1], y)), self.prec)
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if x != self.X.position or force:
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self.run_async(self.X.move_absolute, x, is_async=is_async)
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if y != self.Y.position or force:
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self.run_async(self.Y.move_absolute, y, is_async=is_async)
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def move_relative(self, x, y, is_async=True):
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y = round(y, self.prec)
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self.run_async(self.X.move_relative, x, is_async=is_async)
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self.run_async(self.Y.move_relative, y, is_async=is_async)
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def stop(self):
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self.X.move_stop()
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self.Y.move_stop()
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def open(self):
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'''Opens the serial ports.'''
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res = self.X.open() and self.Y.open()
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return res
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def close(self):
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def run_async(self, callback, *args, is_async=True):
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self.Y.clearResponses()
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callback(*args)
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traceback.print_exc()
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self.busy = False
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def isOpen(self):
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return all([self.X.isOpen(), self.Y.isOpen()])
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def get_config(self) -> dict:
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return {
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'X': {
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'port': self.X.portName(),
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'baudrate': self.X.baudRate(),
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},
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'Y': {
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},
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}
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def load_config(self, config: dict):
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x_config = config.get('X', {})
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y_config = config.get('Y', {})
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self.X.setBaudRate(x_config.get('baudrate', 115200))
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self.X.setPortName(x_config.get('port', 'COM12'))
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self.Y.setBaudRate(y_config.get('baudrate', 115200))
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self.Y.setPortName(y_config.get('port', 'COM13'))
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def getViewWidget(self):
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'''Generates a QGroupBox with XY
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stage controls.'''
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view = KinesisView(stage=self)
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return view
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class KinesisView(Tree):
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'''View class for the Kinesis stage controller.'''
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def __init__(
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self, parent: Optional['QtWidgets.QWidget'] = None, stage: KinesisXY = None
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):
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if not isinstance(stage, KinesisXY):
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raise ValueError('stage must be an instance of KinesisXY.')
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self.__stage = stage if stage else KinesisXY()
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self.__threadpool = QtCore.QThreadPool.globalInstance()
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super().__init__(parent)
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def create_parameters(self):
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params = [
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{
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'name': str(XYStageParams.MODEL),
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'type': 'str',
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'value': str(self),
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'readonly': True,
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},
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{
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'name': str(XYStageParams.STATUS),
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'type': 'str',
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'value': 'Idle',
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|
+
'readonly': True,
|
|
166
|
+
},
|
|
167
|
+
{
|
|
168
|
+
'name': str(XYStageParams.X_POSITION),
|
|
169
|
+
'type': 'float',
|
|
170
|
+
'value': 0.0,
|
|
171
|
+
'decimals': 6,
|
|
172
|
+
'suffix': 'mm',
|
|
173
|
+
},
|
|
174
|
+
{
|
|
175
|
+
'name': str(XYStageParams.Y_POSITION),
|
|
176
|
+
'type': 'float',
|
|
177
|
+
'value': 0.0,
|
|
178
|
+
'decimals': 6,
|
|
179
|
+
'suffix': 'mm',
|
|
180
|
+
},
|
|
181
|
+
{
|
|
182
|
+
'name': str(XYStageParams.MOVE),
|
|
183
|
+
'type': 'action',
|
|
184
|
+
},
|
|
185
|
+
{
|
|
186
|
+
'name': str(XYStageParams.HOME),
|
|
187
|
+
'type': 'action',
|
|
188
|
+
},
|
|
189
|
+
{
|
|
190
|
+
'name': str(XYStageParams.CENTER),
|
|
191
|
+
'type': 'action',
|
|
192
|
+
},
|
|
193
|
+
{
|
|
194
|
+
'name': str(XYStageParams.STOP),
|
|
195
|
+
'type': 'action',
|
|
196
|
+
},
|
|
197
|
+
{
|
|
198
|
+
'name': str(XYStageParams.CONTROLS),
|
|
199
|
+
'type': 'group',
|
|
200
|
+
'expanded': False,
|
|
201
|
+
'children': [
|
|
202
|
+
{
|
|
203
|
+
'name': str(XYStageParams.X_JUMP_P),
|
|
204
|
+
'type': 'action',
|
|
205
|
+
},
|
|
206
|
+
{
|
|
207
|
+
'name': str(XYStageParams.X_STEP_P),
|
|
208
|
+
'type': 'action',
|
|
209
|
+
},
|
|
210
|
+
{
|
|
211
|
+
'name': str(XYStageParams.X_STEP_N),
|
|
212
|
+
'type': 'action',
|
|
213
|
+
},
|
|
214
|
+
{
|
|
215
|
+
'name': str(XYStageParams.X_JUMP_N),
|
|
216
|
+
'type': 'action',
|
|
217
|
+
},
|
|
218
|
+
{
|
|
219
|
+
'name': str(XYStageParams.Y_JUMP_P),
|
|
220
|
+
'type': 'action',
|
|
221
|
+
},
|
|
222
|
+
{
|
|
223
|
+
'name': str(XYStageParams.Y_STEP_P),
|
|
224
|
+
'type': 'action',
|
|
225
|
+
},
|
|
226
|
+
{
|
|
227
|
+
'name': str(XYStageParams.Y_STEP_N),
|
|
228
|
+
'type': 'action',
|
|
229
|
+
},
|
|
230
|
+
{
|
|
231
|
+
'name': str(XYStageParams.Y_JUMP_N),
|
|
232
|
+
'type': 'action',
|
|
233
|
+
},
|
|
234
|
+
],
|
|
235
|
+
},
|
|
236
|
+
{
|
|
237
|
+
'name': str(XYStageParams.OPTIONS),
|
|
238
|
+
'type': 'group',
|
|
239
|
+
'expanded': False,
|
|
240
|
+
'children': [
|
|
241
|
+
{
|
|
242
|
+
'name': str(XYStageParams.STEP),
|
|
243
|
+
'type': 'float',
|
|
244
|
+
'value': 0.05,
|
|
245
|
+
'suffix': 'mm',
|
|
246
|
+
},
|
|
247
|
+
{
|
|
248
|
+
'name': str(XYStageParams.JUMP),
|
|
249
|
+
'type': 'float',
|
|
250
|
+
'value': 0.5,
|
|
251
|
+
'suffix': 'mm',
|
|
252
|
+
},
|
|
253
|
+
{
|
|
254
|
+
'name': str(XYStageParams.ID_X),
|
|
255
|
+
'type': 'action',
|
|
256
|
+
},
|
|
257
|
+
{
|
|
258
|
+
'name': str(XYStageParams.ID_Y),
|
|
259
|
+
'type': 'action',
|
|
260
|
+
},
|
|
261
|
+
],
|
|
262
|
+
},
|
|
263
|
+
{
|
|
264
|
+
'name': str(XYStageParams.SERIAL_PORT),
|
|
265
|
+
'type': 'group',
|
|
266
|
+
'expanded': False,
|
|
267
|
+
'children': [
|
|
268
|
+
{
|
|
269
|
+
'name': str(XYStageParams.PORT),
|
|
270
|
+
'type': 'list',
|
|
271
|
+
'limits': KinesisView._get_available_ports(),
|
|
272
|
+
},
|
|
273
|
+
{
|
|
274
|
+
'name': str(XYStageParams.BAUDRATE),
|
|
275
|
+
'type': 'list',
|
|
276
|
+
'default': 115200,
|
|
277
|
+
'limits': KinesisView._get_baudrates(),
|
|
278
|
+
},
|
|
279
|
+
{
|
|
280
|
+
'name': str(XYStageParams.SET_PORT_X),
|
|
281
|
+
'type': 'action',
|
|
282
|
+
},
|
|
283
|
+
{
|
|
284
|
+
'name': str(XYStageParams.SET_PORT_Y),
|
|
285
|
+
'type': 'action',
|
|
286
|
+
},
|
|
287
|
+
{'name': str(XYStageParams.OPEN), 'type': 'action'},
|
|
288
|
+
{'name': str(XYStageParams.CLOSE), 'type': 'action'},
|
|
289
|
+
{
|
|
290
|
+
'name': str(XYStageParams.REFRESH),
|
|
291
|
+
'type': 'action',
|
|
292
|
+
},
|
|
293
|
+
{
|
|
294
|
+
'name': str(XYStageParams.PORT_STATE),
|
|
295
|
+
'type': 'str',
|
|
296
|
+
'value': 'closed',
|
|
297
|
+
'readonly': True,
|
|
298
|
+
},
|
|
299
|
+
],
|
|
300
|
+
},
|
|
301
|
+
]
|
|
302
|
+
|
|
303
|
+
self.param_tree = Parameter.create(name='', type='group', children=params)
|
|
304
|
+
# self.param_tree.sigTreeStateChanged.connect(self.change)
|
|
305
|
+
self.header().setSectionResizeMode(
|
|
306
|
+
QtWidgets.QHeaderView.ResizeMode.ResizeToContents
|
|
307
|
+
)
|
|
308
|
+
|
|
309
|
+
self.initializeSignals()
|
|
310
|
+
|
|
311
|
+
self.__stage.asyncStarted.connect(
|
|
312
|
+
lambda: self.set_param_value(XYStageParams.STATUS, 'busy')
|
|
313
|
+
)
|
|
314
|
+
self.__stage.asyncFinished.connect(self.updateControls)
|
|
315
|
+
|
|
316
|
+
def initializeSignals(self):
|
|
317
|
+
self._connect_movement_signals()
|
|
318
|
+
self._connect_identification_signals()
|
|
319
|
+
self._connect_configuration_signals()
|
|
320
|
+
|
|
321
|
+
def _connect_movement_signals(self):
|
|
322
|
+
movement_params = [
|
|
323
|
+
XYStageParams.MOVE,
|
|
324
|
+
XYStageParams.HOME,
|
|
325
|
+
XYStageParams.CENTER,
|
|
326
|
+
XYStageParams.STOP,
|
|
327
|
+
XYStageParams.X_JUMP_P,
|
|
328
|
+
XYStageParams.X_JUMP_N,
|
|
329
|
+
XYStageParams.X_STEP_P,
|
|
330
|
+
XYStageParams.X_STEP_N,
|
|
331
|
+
XYStageParams.Y_JUMP_P,
|
|
332
|
+
XYStageParams.Y_JUMP_N,
|
|
333
|
+
XYStageParams.Y_STEP_P,
|
|
334
|
+
XYStageParams.Y_STEP_N,
|
|
335
|
+
]
|
|
336
|
+
for param in movement_params:
|
|
337
|
+
self.get_param(param).sigActivated.connect(self._handle_movement_signal)
|
|
338
|
+
|
|
339
|
+
def _handle_movement_signal(self, action: Parameter):
|
|
340
|
+
path = self.get_param_path(action)
|
|
341
|
+
if not path:
|
|
342
|
+
return
|
|
343
|
+
|
|
344
|
+
param = XYStageParams('.'.join(path))
|
|
345
|
+
|
|
346
|
+
if param == XYStageParams.MOVE:
|
|
347
|
+
self.__stage.move_absolute(
|
|
348
|
+
self.get_param_value(XYStageParams.X_POSITION),
|
|
349
|
+
self.get_param_value(XYStageParams.Y_POSITION),
|
|
350
|
+
)
|
|
351
|
+
elif param == XYStageParams.HOME:
|
|
352
|
+
self.__stage.home()
|
|
353
|
+
elif param == XYStageParams.CENTER:
|
|
354
|
+
self.__stage.center()
|
|
355
|
+
elif param == XYStageParams.STOP:
|
|
356
|
+
self.__stage.stop()
|
|
357
|
+
elif param == XYStageParams.X_JUMP_P:
|
|
358
|
+
self.__stage.move_relative(self.get_param_value(XYStageParams.JUMP), 0)
|
|
359
|
+
elif param == XYStageParams.X_JUMP_N:
|
|
360
|
+
self.__stage.move_relative(-self.get_param_value(XYStageParams.JUMP), 0)
|
|
361
|
+
elif param == XYStageParams.X_STEP_P:
|
|
362
|
+
self.__stage.move_relative(self.get_param_value(XYStageParams.STEP), 0)
|
|
363
|
+
elif param == XYStageParams.X_STEP_N:
|
|
364
|
+
self.__stage.move_relative(-self.get_param_value(XYStageParams.STEP), 0)
|
|
365
|
+
elif param == XYStageParams.Y_JUMP_P:
|
|
366
|
+
self.__stage.move_relative(0, self.get_param_value(XYStageParams.JUMP))
|
|
367
|
+
elif param == XYStageParams.Y_JUMP_N:
|
|
368
|
+
self.__stage.move_relative(0, -self.get_param_value(XYStageParams.JUMP))
|
|
369
|
+
elif param == XYStageParams.Y_STEP_P:
|
|
370
|
+
self.__stage.move_relative(0, self.get_param_value(XYStageParams.STEP))
|
|
371
|
+
elif param == XYStageParams.Y_STEP_N:
|
|
372
|
+
self.__stage.move_relative(0, -self.get_param_value(XYStageParams.STEP))
|
|
373
|
+
|
|
374
|
+
def _connect_identification_signals(self):
|
|
375
|
+
identification_params = [
|
|
376
|
+
XYStageParams.ID_X,
|
|
377
|
+
XYStageParams.ID_Y,
|
|
378
|
+
]
|
|
379
|
+
for param in identification_params:
|
|
380
|
+
self.get_param(param).sigActivated.connect(
|
|
381
|
+
self._handle_identification_signal
|
|
382
|
+
)
|
|
383
|
+
|
|
384
|
+
def _handle_identification_signal(self, action: Parameter):
|
|
385
|
+
path = self.get_param_path(action)
|
|
386
|
+
if not path:
|
|
387
|
+
return
|
|
388
|
+
|
|
389
|
+
param = XYStageParams('.'.join(path))
|
|
390
|
+
|
|
391
|
+
if param == XYStageParams.ID_X:
|
|
392
|
+
self.__stage.X.identify()
|
|
393
|
+
elif param == XYStageParams.ID_Y:
|
|
394
|
+
self.__stage.Y.identify()
|
|
395
|
+
|
|
396
|
+
def _connect_configuration_signals(self):
|
|
397
|
+
configuration_params = [
|
|
398
|
+
XYStageParams.SET_PORT_X,
|
|
399
|
+
XYStageParams.SET_PORT_Y,
|
|
400
|
+
XYStageParams.OPEN,
|
|
401
|
+
XYStageParams.CLOSE,
|
|
402
|
+
XYStageParams.REFRESH,
|
|
403
|
+
]
|
|
404
|
+
for param in configuration_params:
|
|
405
|
+
self.get_param(param).sigActivated.connect(
|
|
406
|
+
self._handle_configuration_signal
|
|
407
|
+
)
|
|
408
|
+
|
|
409
|
+
def _handle_configuration_signal(self, action: Parameter):
|
|
410
|
+
path = self.get_param_path(action)
|
|
411
|
+
if not path:
|
|
412
|
+
return
|
|
413
|
+
|
|
414
|
+
param = XYStageParams('.'.join(path))
|
|
415
|
+
|
|
416
|
+
if param == XYStageParams.SET_PORT_X:
|
|
417
|
+
self.setConfig()
|
|
418
|
+
elif param == XYStageParams.SET_PORT_Y:
|
|
419
|
+
self.setConfig(X=False)
|
|
420
|
+
elif param == XYStageParams.OPEN:
|
|
421
|
+
self.open()
|
|
422
|
+
elif param == XYStageParams.CLOSE:
|
|
423
|
+
self.__stage.close()
|
|
424
|
+
elif param == XYStageParams.REFRESH:
|
|
425
|
+
self._refresh_ports()
|
|
426
|
+
|
|
427
|
+
def isOpen(self):
|
|
428
|
+
return self.__stage.isOpen()
|
|
429
|
+
|
|
430
|
+
def setConfig(self, X: bool = True):
|
|
431
|
+
if not self.__stage.isOpen():
|
|
432
|
+
self.__stage.close()
|
|
433
|
+
|
|
434
|
+
self.setPortName(self.get_param_value(XYStageParams.PORT), X)
|
|
435
|
+
# self.setBaudRate(self.get_param_value(XYStageParams.BAUDRATE), X)
|
|
436
|
+
|
|
437
|
+
def setPortName(self, name: str, X: bool = True):
|
|
438
|
+
serial: KDC101Controller = self.__stage.X if X else self.__stage.Y
|
|
439
|
+
if not serial.isOpen():
|
|
440
|
+
serial.setPortName(name)
|
|
441
|
+
|
|
442
|
+
def open(self):
|
|
443
|
+
res = self.__stage.open()
|
|
444
|
+
|
|
445
|
+
if res:
|
|
446
|
+
self.set_param_value(XYStageParams.X_POSITION, self.__stage.position[0])
|
|
447
|
+
self.set_param_value(XYStageParams.Y_POSITION, self.__stage.position[1])
|
|
448
|
+
self.set_expanded(XYStageParams.SERIAL_PORT)
|
|
449
|
+
|
|
450
|
+
def getStep(self):
|
|
451
|
+
return self.get_param_value(XYStageParams.STEP)
|
|
452
|
+
|
|
453
|
+
def setStep(self, value: float):
|
|
454
|
+
self.set_param_value(XYStageParams.STEP, value)
|
|
455
|
+
|
|
456
|
+
def getJump(self):
|
|
457
|
+
return self.get_param_value(XYStageParams.JUMP)
|
|
458
|
+
|
|
459
|
+
def setJump(self, value: float):
|
|
460
|
+
self.set_param_value(XYStageParams.JUMP, value)
|
|
461
|
+
|
|
462
|
+
def center(self):
|
|
463
|
+
self.get_param(XYStageParams.CENTER).activate()
|
|
464
|
+
|
|
465
|
+
def stop(self):
|
|
466
|
+
self.get_param(XYStageParams.STOP).activate()
|
|
467
|
+
|
|
468
|
+
def move(self, X: bool, jump: bool, direction: bool):
|
|
469
|
+
if jump:
|
|
470
|
+
param = (
|
|
471
|
+
XYStageParams.X_JUMP_P
|
|
472
|
+
if X and direction
|
|
473
|
+
else XYStageParams.X_JUMP_N
|
|
474
|
+
if X and not direction
|
|
475
|
+
else XYStageParams.Y_JUMP_P
|
|
476
|
+
if not X and direction
|
|
477
|
+
else XYStageParams.Y_JUMP_N
|
|
478
|
+
)
|
|
479
|
+
else:
|
|
480
|
+
param = (
|
|
481
|
+
XYStageParams.X_STEP_P
|
|
482
|
+
if X and direction
|
|
483
|
+
else XYStageParams.X_STEP_N
|
|
484
|
+
if X and not direction
|
|
485
|
+
else XYStageParams.Y_STEP_P
|
|
486
|
+
if not X and direction
|
|
487
|
+
else XYStageParams.Y_STEP_N
|
|
488
|
+
)
|
|
489
|
+
|
|
490
|
+
self.get_param(param).activate()
|
|
491
|
+
|
|
492
|
+
def moveRelative(self, x: float, y: float):
|
|
493
|
+
self.__stage.move_relative(x, y)
|
|
494
|
+
|
|
495
|
+
def moveAbsolute(self, x: float, y: float):
|
|
496
|
+
self.__stage.move_absolute(x, y)
|
|
497
|
+
|
|
498
|
+
def updateHighlight(self):
|
|
499
|
+
'''
|
|
500
|
+
Updates the highlight style of the "Connect" action.
|
|
501
|
+
'''
|
|
502
|
+
style = ''
|
|
503
|
+
if self.isOpen():
|
|
504
|
+
style = 'background-color: #004CB6'
|
|
505
|
+
else:
|
|
506
|
+
style = 'background-color: black'
|
|
507
|
+
|
|
508
|
+
next(self.get_param(XYStageParams.OPEN).items.keys()).button.setStyleSheet(
|
|
509
|
+
style
|
|
510
|
+
)
|
|
511
|
+
|
|
512
|
+
def updateControls(self, value: bool):
|
|
513
|
+
step_params = [
|
|
514
|
+
XYStageParams.X_STEP_N,
|
|
515
|
+
XYStageParams.X_STEP_P,
|
|
516
|
+
XYStageParams.Y_STEP_N,
|
|
517
|
+
XYStageParams.Y_STEP_P,
|
|
518
|
+
]
|
|
519
|
+
|
|
520
|
+
for param in step_params:
|
|
521
|
+
next(self.get_param(param).items.keys()).button.setStyleSheet(
|
|
522
|
+
'background-color: #004CB6' if not value else ''
|
|
523
|
+
)
|
|
524
|
+
|
|
525
|
+
jump_params = [
|
|
526
|
+
XYStageParams.X_JUMP_N,
|
|
527
|
+
XYStageParams.X_JUMP_P,
|
|
528
|
+
XYStageParams.Y_JUMP_N,
|
|
529
|
+
XYStageParams.Y_JUMP_P,
|
|
530
|
+
]
|
|
531
|
+
|
|
532
|
+
for param in jump_params:
|
|
533
|
+
next(self.get_param(param).items.keys()).button.setStyleSheet(
|
|
534
|
+
'background-color: #004CB6' if value else ''
|
|
535
|
+
)
|
|
536
|
+
|
|
537
|
+
def updatePositions(self):
|
|
538
|
+
self.set_param_value(XYStageParams.STATUS, 'idle')
|
|
539
|
+
|
|
540
|
+
self.set_param_value(XYStageParams.X_POSITION, self.__stage.X.state.position)
|
|
541
|
+
self.set_param_value(XYStageParams.Y_POSITION, self.__stage.Y.state.position)
|
|
542
|
+
|
|
543
|
+
def __str__(self):
|
|
544
|
+
return 'Kinesis KDC101 + Z825B'
|
|
545
|
+
|
|
546
|
+
@staticmethod
|
|
547
|
+
def _get_available_ports():
|
|
548
|
+
return [
|
|
549
|
+
info.portName() for info in QtSerialPort.QSerialPortInfo.availablePorts()
|
|
550
|
+
]
|
|
551
|
+
|
|
552
|
+
@staticmethod
|
|
553
|
+
def _get_baudrates():
|
|
554
|
+
return [
|
|
555
|
+
baudrate for baudrate in QtSerialPort.QSerialPortInfo.standardBaudRates()
|
|
556
|
+
]
|
|
557
|
+
|
|
558
|
+
def _refresh_ports(self):
|
|
559
|
+
self.get_param(XYStageParams.PORT).setLimits(self._get_available_ports())
|
|
560
|
+
|
|
561
|
+
|
|
562
|
+
# class OldKinesisView(QtWidgets.QGroupBox):
|
|
563
|
+
# '''View class for the Kinesis stage controller.'''
|
|
564
|
+
|
|
565
|
+
# def __init__(
|
|
566
|
+
# self, parent: Optional['QtWidgets.QWidget'] = None, stage: KinesisXY = None
|
|
567
|
+
# ):
|
|
568
|
+
# super().__init__(parent)
|
|
569
|
+
|
|
570
|
+
# self.setTitle(KinesisXY.__name__)
|
|
571
|
+
# self.stage = stage if stage else KinesisXY()
|
|
572
|
+
# self.threadpool = QtCore.QThreadPool.globalInstance()
|
|
573
|
+
# self.init_ui()
|
|
574
|
+
|
|
575
|
+
# def init_ui(self):
|
|
576
|
+
# container = QtWidgets.QVBoxLayout()
|
|
577
|
+
# self.setLayout(container)
|
|
578
|
+
|
|
579
|
+
# self._connect_btn = QtWidgets.QPushButton(
|
|
580
|
+
# 'Connect', clicked=lambda: self.stage.open()
|
|
581
|
+
# )
|
|
582
|
+
# self._disconnect_btn = QtWidgets.QPushButton(
|
|
583
|
+
# 'Disconnect', clicked=lambda: self.stage.close()
|
|
584
|
+
# )
|
|
585
|
+
# self._config_btn = QtWidgets.QPushButton(
|
|
586
|
+
# 'Config.', clicked=lambda: self.stage.open_dialog()
|
|
587
|
+
# )
|
|
588
|
+
|
|
589
|
+
# self._stop_btn = QtWidgets.QPushButton(
|
|
590
|
+
# 'STOP!', clicked=lambda: self.stage.stop()
|
|
591
|
+
# )
|
|
592
|
+
|
|
593
|
+
# btns = QtWidgets.QHBoxLayout()
|
|
594
|
+
# btns.addWidget(self._connect_btn)
|
|
595
|
+
# btns.addWidget(self._disconnect_btn)
|
|
596
|
+
# btns.addWidget(self._config_btn)
|
|
597
|
+
# btns.addWidget(self._stop_btn)
|
|
598
|
+
# container.addLayout(btns)
|
|
599
|
+
|
|
600
|
+
# self.controlsWidget = QtWidgets.QWidget()
|
|
601
|
+
# hLayout = QtWidgets.QVBoxLayout()
|
|
602
|
+
# self.controlsWidget.setLayout(hLayout)
|
|
603
|
+
# formLayout = QtWidgets.QFormLayout()
|
|
604
|
+
# hLayout.addLayout(formLayout, 3)
|
|
605
|
+
# container.addWidget(self.controlsWidget)
|
|
606
|
+
# container.addStretch()
|
|
607
|
+
|
|
608
|
+
# self.x_spin = QtWidgets.QDoubleSpinBox()
|
|
609
|
+
# self.y_spin = QtWidgets.QDoubleSpinBox()
|
|
610
|
+
# self.x_spin.setDecimals(self.stage.prec)
|
|
611
|
+
# self.y_spin.setDecimals(self.stage.prec)
|
|
612
|
+
# self.x_spin.setSingleStep(10 ** (-self.stage.prec))
|
|
613
|
+
# self.y_spin.setSingleStep(10 ** (-self.stage.prec))
|
|
614
|
+
# self.x_spin.setValue(self.stage.position[0])
|
|
615
|
+
# self.y_spin.setValue(self.stage.position[1])
|
|
616
|
+
# self.x_spin.setMinimum(self.stage.min[0])
|
|
617
|
+
# self.y_spin.setMinimum(self.stage.min[1])
|
|
618
|
+
# self.x_spin.setMaximum(self.stage.max[0])
|
|
619
|
+
# self.y_spin.setMaximum(self.stage.max[1])
|
|
620
|
+
|
|
621
|
+
# formLayout.addRow(QtWidgets.QLabel('X [mm]'), self.x_spin)
|
|
622
|
+
# formLayout.addRow(QtWidgets.QLabel('Y [mm]'), self.y_spin)
|
|
623
|
+
|
|
624
|
+
# self.step_spin = QtWidgets.QDoubleSpinBox()
|
|
625
|
+
# self.jump_spin = QtWidgets.QDoubleSpinBox()
|
|
626
|
+
# self.step_spin.setDecimals(self.stage.prec)
|
|
627
|
+
# self.jump_spin.setDecimals(self.stage.prec)
|
|
628
|
+
# self.step_spin.setSingleStep(10 ** (-self.stage.prec))
|
|
629
|
+
# self.jump_spin.setSingleStep(10 ** (-self.stage.prec))
|
|
630
|
+
# self.step_spin.setMinimum(self.stage.min[0])
|
|
631
|
+
# self.jump_spin.setMinimum(self.stage.min[1])
|
|
632
|
+
# self.step_spin.setMaximum(self.stage.max[0])
|
|
633
|
+
# self.jump_spin.setMaximum(self.stage.max[1])
|
|
634
|
+
# self.step_spin.setValue(0.050)
|
|
635
|
+
# self.jump_spin.setValue(0.5)
|
|
636
|
+
|
|
637
|
+
# formLayout.addRow(QtWidgets.QLabel('Step [mm]'), self.step_spin)
|
|
638
|
+
# formLayout.addRow(QtWidgets.QLabel('Jump [mm]'), self.jump_spin)
|
|
639
|
+
|
|
640
|
+
# self._move_btn = QtWidgets.QPushButton(
|
|
641
|
+
# 'Move',
|
|
642
|
+
# clicked=lambda: self.doAsync(
|
|
643
|
+
# self.stage.move_absolute,
|
|
644
|
+
# self.x_spin.value(),
|
|
645
|
+
# self.y_spin.value(),
|
|
646
|
+
# ),
|
|
647
|
+
# )
|
|
648
|
+
# self._home_btn = QtWidgets.QPushButton(
|
|
649
|
+
# 'Home', clicked=lambda: self.doAsync(self.stage.home)
|
|
650
|
+
# )
|
|
651
|
+
# self._center_btn = QtWidgets.QPushButton(
|
|
652
|
+
# 'Center',
|
|
653
|
+
# clicked=lambda: self.doAsync(self.stage.center),
|
|
654
|
+
# )
|
|
655
|
+
# self.x_id_btn = QtWidgets.QPushButton(
|
|
656
|
+
# 'ID X', clicked=lambda: self.stage.X_Kinesis.identify()
|
|
657
|
+
# )
|
|
658
|
+
# self.y_id_btn = QtWidgets.QPushButton(
|
|
659
|
+
# 'ID Y', clicked=lambda: self.stage.Y_Kinesis.identify()
|
|
660
|
+
# )
|
|
661
|
+
|
|
662
|
+
# controls = QtWidgets.QHBoxLayout()
|
|
663
|
+
# controls.addWidget(self._move_btn)
|
|
664
|
+
# controls.addWidget(self._home_btn)
|
|
665
|
+
# controls.addWidget(self._center_btn)
|
|
666
|
+
# controls.addWidget(self.x_id_btn)
|
|
667
|
+
# controls.addWidget(self.y_id_btn)
|
|
668
|
+
# formLayout.addRow(controls)
|
|
669
|
+
|
|
670
|
+
# self.n_x_jump_btn = QtWidgets.QPushButton(
|
|
671
|
+
# 'x--',
|
|
672
|
+
# clicked=lambda: self.doAsync(
|
|
673
|
+
# self.stage.move_relative, -self.jump_spin.value(), 0
|
|
674
|
+
# ),
|
|
675
|
+
# )
|
|
676
|
+
# self.n_x_step_btn = QtWidgets.QPushButton(
|
|
677
|
+
# 'x-',
|
|
678
|
+
# clicked=lambda: self.doAsync(
|
|
679
|
+
# self.stage.move_relative, -self.step_spin.value(), 0
|
|
680
|
+
# ),
|
|
681
|
+
# )
|
|
682
|
+
# self.p_x_step_btn = QtWidgets.QPushButton(
|
|
683
|
+
# 'x+',
|
|
684
|
+
# clicked=lambda: self.doAsync(
|
|
685
|
+
# self.stage.move_relative, self.step_spin.value(), 0
|
|
686
|
+
# ),
|
|
687
|
+
# )
|
|
688
|
+
# self.p_x_jump_btn = QtWidgets.QPushButton(
|
|
689
|
+
# 'x++',
|
|
690
|
+
# clicked=lambda: self.doAsync(
|
|
691
|
+
# self.stage.move_relative, self.jump_spin.value(), 0
|
|
692
|
+
# ),
|
|
693
|
+
# )
|
|
694
|
+
|
|
695
|
+
# self.n_y_jump_btn = QtWidgets.QPushButton(
|
|
696
|
+
# 'y--',
|
|
697
|
+
# clicked=lambda: self.doAsync(
|
|
698
|
+
# self.stage.move_relative, 0, -self.jump_spin.value()
|
|
699
|
+
# ),
|
|
700
|
+
# )
|
|
701
|
+
# self.n_y_step_btn = QtWidgets.QPushButton(
|
|
702
|
+
# 'y-',
|
|
703
|
+
# clicked=lambda: self.doAsync(
|
|
704
|
+
# self.stage.move_relative, 0, -self.step_spin.value()
|
|
705
|
+
# ),
|
|
706
|
+
# )
|
|
707
|
+
# self.p_y_step_btn = QtWidgets.QPushButton(
|
|
708
|
+
# 'y+',
|
|
709
|
+
# clicked=lambda: self.doAsync(
|
|
710
|
+
# self.stage.move_relative, 0, self.step_spin.value()
|
|
711
|
+
# ),
|
|
712
|
+
# )
|
|
713
|
+
# self.p_y_jump_btn = QtWidgets.QPushButton(
|
|
714
|
+
# 'y++',
|
|
715
|
+
# clicked=lambda: self.doAsync(
|
|
716
|
+
# self.stage.move_relative, 0, self.jump_spin.value()
|
|
717
|
+
# ),
|
|
718
|
+
# )
|
|
719
|
+
|
|
720
|
+
# self.n_x_step_btn.setStyleSheet('background-color: #004CB6')
|
|
721
|
+
# self.n_y_step_btn.setStyleSheet('background-color: #004CB6')
|
|
722
|
+
# self.p_x_step_btn.setStyleSheet('background-color: #004CB6')
|
|
723
|
+
# self.p_y_step_btn.setStyleSheet('background-color: #004CB6')
|
|
724
|
+
|
|
725
|
+
# grid = QtWidgets.QGridLayout()
|
|
726
|
+
# grid.addWidget(self.n_x_jump_btn, 2, 0)
|
|
727
|
+
# grid.addWidget(self.n_x_step_btn, 2, 1)
|
|
728
|
+
# grid.addWidget(self.p_x_step_btn, 2, 3)
|
|
729
|
+
# grid.addWidget(self.p_x_jump_btn, 2, 4)
|
|
730
|
+
|
|
731
|
+
# grid.addWidget(self.n_y_jump_btn, 4, 2)
|
|
732
|
+
# grid.addWidget(self.n_y_step_btn, 3, 2)
|
|
733
|
+
# grid.addWidget(self.p_y_step_btn, 1, 2)
|
|
734
|
+
# grid.addWidget(self.p_y_jump_btn, 0, 2)
|
|
735
|
+
|
|
736
|
+
# hLayout.addLayout(grid, 1)
|
|
737
|
+
# hLayout.addStretch()
|
|
738
|
+
|
|
739
|
+
# def doAsync(self, callback, *args):
|
|
740
|
+
# res = self.stage.isOpen()
|
|
741
|
+
# if res[0] and res[1]:
|
|
742
|
+
# self.stage.X_Kinesis.serial.read_all()
|
|
743
|
+
# self.stage.Y_Kinesis.serial.read_all()
|
|
744
|
+
# if self.controlsWidget is not None:
|
|
745
|
+
# self.controlsWidget.setEnabled(False)
|
|
746
|
+
# _worker = QThreadWorker(callback, *args, nokwargs=True)
|
|
747
|
+
# # Execute
|
|
748
|
+
# _worker.signals.result.connect(lambda: self.update())
|
|
749
|
+
|
|
750
|
+
# _worker.setAutoDelete(True)
|
|
751
|
+
|
|
752
|
+
# _worker.signals.finished.connect(lambda: self.threadpool.clear())
|
|
753
|
+
|
|
754
|
+
# self.threadpool.start(_worker)
|
|
755
|
+
|
|
756
|
+
# def update(self):
|
|
757
|
+
# self.x_spin.setValue(self.stage.position[0])
|
|
758
|
+
# self.y_spin.setValue(self.stage.position[1])
|
|
759
|
+
# if self.controlsWidget is not None:
|
|
760
|
+
# self.controlsWidget.setEnabled(True)
|
|
761
|
+
|
|
762
|
+
|
|
763
|
+
if __name__ == '__main__':
|
|
764
|
+
XY = KinesisXY('COM11', 'COM12')
|
|
765
|
+
|
|
766
|
+
# print(XY.home())
|
|
767
|
+
print(XY.center())
|
|
768
|
+
|
|
769
|
+
# for i in range(10):
|
|
770
|
+
# k = 0.01
|
|
771
|
+
# XY.move_relative(k, k)
|
|
772
|
+
# sleep(1)
|
|
773
|
+
# for i in range(10):
|
|
774
|
+
# k = - 0.01
|
|
775
|
+
# XY.move_relative(k, k)
|
|
776
|
+
# sleep(1)
|