micress-micpy 0.3.1b0__py3-none-any.whl → 0.3.1b1__py3-none-any.whl

micpy/bin.py

@@ -394,7 +394,7 @@ class Series(np.ndarray):
         obj.times = [field.time for field in fields]
         obj.spacings = [field.spacing for field in fields]
         return obj
-    
+
     def __array_finalize__(self, obj):
         if obj is None:
             return
@@ -431,7 +431,6 @@ class Series(np.ndarray):
             return series
         raise TypeError("Invalid argument type")
 
-
     def write(self, filename: str, compressed: bool = True, geometry: bool = True):
         """Write the series to a binary file.
 
@@ -588,8 +587,8 @@ class File:
         """Set the geometry.
 
         Args:
-            shape (Tuple[int, int, int]): Shape of the geometry.
-            spacing (Tuple[float, float, float]): Spacing of the geometry in μm.
+            shape (Tuple[int, int, int]): Shape of the geometry (z, y, x).
+            spacing (Tuple[float, float, float]): Spacing of the geometry (dz, dy, dx) in μm.
         """
 
         self.shape = np.array(shape)
@@ -610,8 +609,8 @@ class File:
 
         geometry = geo.read(filename, type=geo.Type.BASIC, compressed=compressed)
 
-        shape = geometry["shape"]
-        spacing = geometry["spacing"]
+        shape = geometry["shape"][::-1]
+        spacing = geometry["spacing"][::-1]
 
         self.set_geometry(shape, spacing)
 
@@ -755,7 +754,7 @@ def plot(
 
     if axis not in ["x", "y", "z"]:
         raise ValueError("Invalid axis")
-    
+
     if field.ndim != 3:
         raise ValueError("Invalid field shape")
 
@@ -768,8 +767,6 @@ def plot(
     elif axis == "y":
         x, y = "x", "z"
         slice_2d = field[:, index, :]
-        if Field.dimensions(field.shape) == 2:
-            slice_2d = slice_2d.reshape(slice_2d.shape[1], slice_2d.shape[0])
     elif axis == "x":
         x, y = "y", "z"
         slice_2d = field[:, :, index]

micpy/geo.py

@@ -165,8 +165,8 @@ def build(
 
     Args:
         filename (str): Filename of a binary file.
-        shape (tuple): Shape of the geometry.
-        spacing (tuple): Spacing of the geometry.
+        shape (tuple): Shape of the geometry (z, y, x).
+        spacing (tuple): Spacing of the geometry (dz, dy, dx) in μm.
     """
     geo_filename = _get_basename(Path(filename)).with_suffix(".geoF")
     geo_data = {

micpy/version.py

@@ -1 +1 @@
-__version__ = "0.3.1b0"
+__version__ = "0.3.1b1"

{micress_micpy-0.3.1b0.dist-info → micress_micpy-0.3.1b1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: micress-micpy
-Version: 0.3.1b0
+Version: 0.3.1b1
 Summary: MicPy is a Python package to facilitate MICRESS workflows.
 Author: Lukas Koschmieder
 Author-email: l.koschmieder@access-technology.de

micress_micpy-0.3.1b1.dist-info/RECORD

@@ -0,0 +1,12 @@
+micpy/__init__.py,sha256=7wQUaseppjQYZW1iAVNm2WSDjvBLlqtY8tiHsfDaW5Q,148
+micpy/bin.py,sha256=LQiaAxLCyBw_7kfimFbZtqqMoP3iAYFVKDc4Ohvyxm8,25729
+micpy/geo.py,sha256=z7dP3hC2Fhed4N5eRrlWlC4jtIXiYPIx2BYNhn10dfw,7447
+micpy/matplotlib.py,sha256=GF2ghyBORC5RRjW00DdsHu5aSkpMFdI9wqg6d_psPsI,1198
+micpy/tab.py,sha256=QCnfggxRWkKgS9-zGj8kyCjhfUw7QeTgGZWedHh4MTw,3548
+micpy/utils.py,sha256=Kt1AvhMvWer9uftbb88X7N27aXtQdJl26grHmmm2vOQ,859
+micpy/version.py,sha256=zKEPT4cdwsCB_uCEMo5TXBcz3hseWXYp71mYqedQBds,25
+micress_micpy-0.3.1b1.dist-info/LICENSE,sha256=seHdCiArizUoWZ6bEFg6N3K2ZtfPK35wvOwg0kH-f6o,1488
+micress_micpy-0.3.1b1.dist-info/METADATA,sha256=5oK-n39nupCZmnR1PNSesTpWkYhTFREiJFGAuY_mZ7g,1229
+micress_micpy-0.3.1b1.dist-info/WHEEL,sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A,92
+micress_micpy-0.3.1b1.dist-info/top_level.txt,sha256=RiopkpW0AGNYdtOW2eQUWgm3yHGC13q9pWlHb2alhiE,6
+micress_micpy-0.3.1b1.dist-info/RECORD,,

micress_micpy-0.3.1b0.dist-info/RECORD

@@ -1,12 +0,0 @@
-micpy/__init__.py,sha256=7wQUaseppjQYZW1iAVNm2WSDjvBLlqtY8tiHsfDaW5Q,148
-micpy/bin.py,sha256=3xclBJLbbBW9N8w9izFEgFh3S2yKgYzrdQKjJsXftSU,25831
-micpy/geo.py,sha256=lVRTtPnTEykkSXNyLm3wnxXOwz72PFu0Spv8ZGHyUHo,7417
-micpy/matplotlib.py,sha256=GF2ghyBORC5RRjW00DdsHu5aSkpMFdI9wqg6d_psPsI,1198
-micpy/tab.py,sha256=QCnfggxRWkKgS9-zGj8kyCjhfUw7QeTgGZWedHh4MTw,3548
-micpy/utils.py,sha256=Kt1AvhMvWer9uftbb88X7N27aXtQdJl26grHmmm2vOQ,859
-micpy/version.py,sha256=o80l_DIF5j_g0KFIiC8SP5DtyipTIK4_NRfkjHjz1Mk,25
-micress_micpy-0.3.1b0.dist-info/LICENSE,sha256=seHdCiArizUoWZ6bEFg6N3K2ZtfPK35wvOwg0kH-f6o,1488
-micress_micpy-0.3.1b0.dist-info/METADATA,sha256=UFUfB1rNxBQxj1OlMO9Qo3YX92weqibYc59tujF8lBo,1229
-micress_micpy-0.3.1b0.dist-info/WHEEL,sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A,92
-micress_micpy-0.3.1b0.dist-info/top_level.txt,sha256=RiopkpW0AGNYdtOW2eQUWgm3yHGC13q9pWlHb2alhiE,6
-micress_micpy-0.3.1b0.dist-info/RECORD,,