mgnify-pipelines-toolkit 1.0.8__py3-none-any.whl → 1.1.0__py3-none-any.whl

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Files changed (7) hide show
  1. mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py +2 -0
  2. {mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/METADATA +1 -1
  3. {mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/RECORD +7 -7
  4. {mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/WHEEL +1 -1
  5. {mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/entry_points.txt +0 -0
  6. {mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/licenses/LICENSE +0 -0
  7. {mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/top_level.txt +0 -0
mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py CHANGED
@@ -427,6 +427,8 @@ def retrieve_regions(
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  new_value.append(region)
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  if not new_value:
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  models_to_remove.append(model)
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+ elif len(new_value) < MIN_SEQ_COUNT:
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+ models_to_remove.append(model)
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  multiregion_matches[model] = new_value
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  [multiregion_matches.pop(model) for model in models_to_remove]
{mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mgnify_pipelines_toolkit
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- Version: 1.0.8
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+ Version: 1.1.0
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  Summary: Collection of scripts and tools for MGnify pipelines
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  Author-email: MGnify team <metagenomics-help@ebi.ac.uk>
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  License: Apache Software License 2.0
{mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/RECORD RENAMED
@@ -4,7 +4,7 @@ mgnify_pipelines_toolkit/analysis/amplicon/amplicon_utils.py,sha256=8qmb57E2XBrw
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  mgnify_pipelines_toolkit/analysis/amplicon/are_there_primers.py,sha256=2-URxvcl13_8O9bUmoa3-KMPSvdTaLbxfFDY-ycs_4M,5316
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  mgnify_pipelines_toolkit/analysis/amplicon/assess_inflection_point_mcp.py,sha256=cRoHPM-VB_L3NWYgkNWuyzqIqhzwHJuU3-6BiiS2lnw,7553
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  mgnify_pipelines_toolkit/analysis/amplicon/assess_mcp_proportions.py,sha256=RAdqakH05Qt_LG9jlV7P2M90o5KmlAXmDFQ4X51NIBE,5387
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- mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py,sha256=x8GmhFPT2ElAcBMeyLEBw3zYxI75fYL0xVHUPSyhw7c,20100
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+ mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py,sha256=W0ob9z_8sjrB1Ck48Ac-_5Vw2kyoRFalcxhrR6KSXpI,20196
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  mgnify_pipelines_toolkit/analysis/amplicon/find_mcp_inflection_points.py,sha256=vC3nKxggnSljfw4HNkugXbXfGvLx7XnryEE7eEGqfqs,3552
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  mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py,sha256=soTewFddtebW-EcejGh9whs3cBLWJrGCYdPc0KukoAw,8756
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  mgnify_pipelines_toolkit/analysis/amplicon/mapseq_to_asv_table.py,sha256=BLqhflblUegCvuQic16PrFXfIXlFWmGkmWJyl4wJoLQ,5040
@@ -48,9 +48,9 @@ mgnify_pipelines_toolkit/schemas/schemas.py,sha256=pnH8LUH8i2ACNvFNWyG-n-eIHZcI5
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  mgnify_pipelines_toolkit/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  mgnify_pipelines_toolkit/utils/fasta_to_delimited.py,sha256=lgYIR1S4crURY7C7nFtgE6QMV4u4zCNsUrVkcRnsEEo,3996
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  mgnify_pipelines_toolkit/utils/get_mpt_version.py,sha256=aS9bWrC9CP7tpxoEVg6eEYt18-pmjG7fJl5Mchz4YOU,798
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- mgnify_pipelines_toolkit-1.0.8.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- mgnify_pipelines_toolkit-1.0.8.dist-info/METADATA,sha256=1hUZYUS7S2wdpK1zQdj4gVYhpUvn_-LjHi8iGb9LQ30,5810
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- mgnify_pipelines_toolkit-1.0.8.dist-info/WHEEL,sha256=SmOxYU7pzNKBqASvQJ7DjX3XGUF92lrGhMb3R6_iiqI,91
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- mgnify_pipelines_toolkit-1.0.8.dist-info/entry_points.txt,sha256=T8soGT2to8c_qafw-0itqCn4sjOnxlfaNWHIaHz4H54,3416
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- mgnify_pipelines_toolkit-1.0.8.dist-info/top_level.txt,sha256=xA_wC7C01V3VwuDnqwRM2QYeJJ45WtvF6LVav4tYxuE,25
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- mgnify_pipelines_toolkit-1.0.8.dist-info/RECORD,,
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+ mgnify_pipelines_toolkit-1.1.0.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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+ mgnify_pipelines_toolkit-1.1.0.dist-info/METADATA,sha256=ZBar6psIFlDE7DNfuDFjeX0HLKsgMwFn6ZW_ifMqEww,5810
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+ mgnify_pipelines_toolkit-1.1.0.dist-info/WHEEL,sha256=ck4Vq1_RXyvS4Jt6SI0Vz6fyVs4GWg7AINwpsaGEgPE,91
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+ mgnify_pipelines_toolkit-1.1.0.dist-info/entry_points.txt,sha256=T8soGT2to8c_qafw-0itqCn4sjOnxlfaNWHIaHz4H54,3416
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+ mgnify_pipelines_toolkit-1.1.0.dist-info/top_level.txt,sha256=xA_wC7C01V3VwuDnqwRM2QYeJJ45WtvF6LVav4tYxuE,25
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+ mgnify_pipelines_toolkit-1.1.0.dist-info/RECORD,,
{mgnify_pipelines_toolkit-1.0.8.dist-info → mgnify_pipelines_toolkit-1.1.0.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (79.0.1)
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+ Generator: setuptools (80.0.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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