mgnify-pipelines-toolkit 0.0.8__py3-none-any.whl → 0.0.9__py3-none-any.whl

mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py

@@ -449,7 +449,7 @@ def parse_args(argv):
     return parser.parse_args(argv)
 
 
-def main(argv):
+def main(argv=None):
     t_start = time.perf_counter()  # time the run
     args = parse_args(argv)
     if not os.path.isdir(args.output_dir):
@@ -481,7 +481,7 @@ def main(argv):
 
 
 if __name__ == '__main__':
-    main(sys.argv[1:])
+    main()
 
 # don't print json
 # name the tsv file better

{mgnify_pipelines_toolkit-0.0.8.dist-info → mgnify_pipelines_toolkit-0.0.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: mgnify_pipelines_toolkit
-Version: 0.0.8
+Version: 0.0.9
 Summary: Collection of scripts and tools for MGnify pipelines
 Author-email: MGnify team <metagenomics-help@ebi.ac.uk>
 License: Apache Software License 2.0

{mgnify_pipelines_toolkit-0.0.8.dist-info → mgnify_pipelines_toolkit-0.0.9.dist-info}/RECORD

@@ -4,7 +4,7 @@ mgnify_pipelines_toolkit/analysis/amplicon/amplicon_utils.py,sha256=cF_7zsdJTzIC
 mgnify_pipelines_toolkit/analysis/amplicon/are_there_primers.py,sha256=fNjzWpXjqpQNRyWG6CoROyHAvA4lZsvPh8sxDpjyMkY,5141
 mgnify_pipelines_toolkit/analysis/amplicon/assess_inflection_point_mcp.py,sha256=leUjaD59EXA39HaMSDm909DGgNDuHVi-2EnUyBSNIWE,6847
 mgnify_pipelines_toolkit/analysis/amplicon/assess_mcp_proportions.py,sha256=AUGeYWWpJ8sP5wpPbTq32G3Iai3NV5JQTZz6MQ0CUU4,4935
-mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py,sha256=kmS5-2SSldXyGElQ11eC4IqwfvwtZXhDWgZQvbPCAgo,18904
+mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py,sha256=htoZyGuDV_64-4PRGpE2qjxw4VihmY4b-2ktuR03Pgg,18897
 mgnify_pipelines_toolkit/analysis/amplicon/find_mcp_inflection_points.py,sha256=5emeZjk8891IgyL5ygVcr8wMP-hGEJoEs2rcBbseWj0,3536
 mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py,sha256=3ODVM7YxYrPiM95UnbYiKmtN93PdlF_JmjZYTEyoCL8,8468
 mgnify_pipelines_toolkit/analysis/amplicon/remove_ambiguous_reads.py,sha256=yhDJFGD3t3TMfUlBCJGwzlK4IjFwm7Bporwp-aIM8uU,3139
@@ -16,9 +16,9 @@ mgnify_pipelines_toolkit/analysis/shared/get_subunits_coords.py,sha256=hFXUTZb-e
 mgnify_pipelines_toolkit/analysis/shared/mapseq2biom.py,sha256=glvql2Y-BTyA1hTIZz2nlmST3SE6LJbep9sKdMH-vaI,5565
 mgnify_pipelines_toolkit/constants/regex_ambiguous_bases.py,sha256=oVeeCy33bY1WJ-rffOULZ3ogi48Jz0FfTS73MPTur-A,1095
 mgnify_pipelines_toolkit/constants/tax_ranks.py,sha256=QOVkxZjMTYwIxCN7L4CLYFQjWoxsuZ4WKlKiTblD4tM,851
-mgnify_pipelines_toolkit-0.0.8.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-mgnify_pipelines_toolkit-0.0.8.dist-info/METADATA,sha256=KPiubPoKNPBVE2K1NXv3dvXpELhqcyddWfWGU4dqpdI,4779
-mgnify_pipelines_toolkit-0.0.8.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-mgnify_pipelines_toolkit-0.0.8.dist-info/entry_points.txt,sha256=UqG2YtR6sMIwrJHV3Zx9r-hEwkLt8j59ah6Xfs88YDQ,1014
-mgnify_pipelines_toolkit-0.0.8.dist-info/top_level.txt,sha256=xA_wC7C01V3VwuDnqwRM2QYeJJ45WtvF6LVav4tYxuE,25
-mgnify_pipelines_toolkit-0.0.8.dist-info/RECORD,,
+mgnify_pipelines_toolkit-0.0.9.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+mgnify_pipelines_toolkit-0.0.9.dist-info/METADATA,sha256=ZnCa-e-9xYNpGuhm9E4-rGK1GiCdmqQgdQkWRurvteA,4779
+mgnify_pipelines_toolkit-0.0.9.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+mgnify_pipelines_toolkit-0.0.9.dist-info/entry_points.txt,sha256=UqG2YtR6sMIwrJHV3Zx9r-hEwkLt8j59ah6Xfs88YDQ,1014
+mgnify_pipelines_toolkit-0.0.9.dist-info/top_level.txt,sha256=xA_wC7C01V3VwuDnqwRM2QYeJJ45WtvF6LVav4tYxuE,25
+mgnify_pipelines_toolkit-0.0.9.dist-info/RECORD,,