metacoag 1.2.0__py3-none-any.whl

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Files changed (17) hide show
  1. metacoag/__init__.py +10 -0
  2. metacoag/cli.py +1271 -0
  3. metacoag/metacoag_utils/__init__.py +10 -0
  4. metacoag/metacoag_utils/auxiliary/marker.hmm +105657 -0
  5. metacoag/metacoag_utils/bidirectionalmap.py +42 -0
  6. metacoag/metacoag_utils/feature_utils.py +235 -0
  7. metacoag/metacoag_utils/graph_utils.py +443 -0
  8. metacoag/metacoag_utils/label_prop_utils.py +513 -0
  9. metacoag/metacoag_utils/marker_gene_utils.py +261 -0
  10. metacoag/metacoag_utils/matching_utils.py +416 -0
  11. metacoag/metacoag_utils/support/combine_cov.py +71 -0
  12. metacoag/metacoag_utils/support/gfa2fasta.py +136 -0
  13. metacoag-1.2.0.dist-info/LICENSE +674 -0
  14. metacoag-1.2.0.dist-info/METADATA +210 -0
  15. metacoag-1.2.0.dist-info/RECORD +17 -0
  16. metacoag-1.2.0.dist-info/WHEEL +4 -0
  17. metacoag-1.2.0.dist-info/entry_points.txt +4 -0
metacoag/__init__.py ADDED
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+ """MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
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+ """
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+
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+ __author__ = "Vijini Mallawaarachchi and Yu Lin"
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+ __copyright__ = "Copyright 2020, MetaCoAG Project"
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+ __license__ = "GPL-3.0"
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+ __version__ = "1.2.0"
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+ __maintainer__ = "Vijini Mallawaarachchi"
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+ __email__ = "vijini.mallawaarachchi@anu.edu.au"
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+ __status__ = "Stable Release"