meta-edc 0.3.6__py3-none-any.whl → 0.3.15__py3-none-any.whl

meta_subject/migrations/0184_alter_glucose_options_and_more.py

@@ -0,0 +1,31 @@
+# Generated by Django 5.0.4 on 2024-04-09 04:18
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0183_alter_dmfollowup_on_dm_medications_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterModelOptions(
+            name="glucose",
+            options={
+                "default_manager_name": "objects",
+                "default_permissions": ("add", "change", "delete", "view", "export", "import"),
+                "verbose_name": "Glucose (FBG/RBG, OGTT)",
+                "verbose_name_plural": "Glucose (FBG/RBG, OGTT)",
+            },
+        ),
+        migrations.AlterModelOptions(
+            name="historicalglucose",
+            options={
+                "get_latest_by": ("history_date", "history_id"),
+                "ordering": ("-history_date", "-history_id"),
+                "verbose_name": "historical Glucose (FBG/RBG, OGTT)",
+                "verbose_name_plural": "historical Glucose (FBG/RBG, OGTT)",
+            },
+        ),
+    ]

meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py

@@ -0,0 +1,82 @@
+# Generated by Django 5.0.4 on 2024-04-18 23:46
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0184_alter_glucose_options_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="bloodresultsins",
+            name="fasting_duration_str",
+            field=models.CharField(
+                blank=True,
+                help_text="As reported by patient. Duration of fast. Format is `HHhMMm`. For example 1h23m, 12h7m, etc",
+                max_length=8,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        "^([0-9]{1,3}h([0-5]?[0-9]m)?)$",
+                        message="Invalid format. Expected something like 1h20m, 11h5m, etc. No spaces allowed.",
+                    )
+                ],
+                verbose_name="How long have they fasted in hours and/or minutes?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="glucose",
+            name="fasting_duration_str",
+            field=models.CharField(
+                blank=True,
+                help_text="As reported by patient. Duration of fast. Format is `HHhMMm`. For example 1h23m, 12h7m, etc",
+                max_length=8,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        "^([0-9]{1,3}h([0-5]?[0-9]m)?)$",
+                        message="Invalid format. Expected something like 1h20m, 11h5m, etc. No spaces allowed.",
+                    )
+                ],
+                verbose_name="How long have they fasted in hours and/or minutes?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalbloodresultsins",
+            name="fasting_duration_str",
+            field=models.CharField(
+                blank=True,
+                help_text="As reported by patient. Duration of fast. Format is `HHhMMm`. For example 1h23m, 12h7m, etc",
+                max_length=8,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        "^([0-9]{1,3}h([0-5]?[0-9]m)?)$",
+                        message="Invalid format. Expected something like 1h20m, 11h5m, etc. No spaces allowed.",
+                    )
+                ],
+                verbose_name="How long have they fasted in hours and/or minutes?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalglucose",
+            name="fasting_duration_str",
+            field=models.CharField(
+                blank=True,
+                help_text="As reported by patient. Duration of fast. Format is `HHhMMm`. For example 1h23m, 12h7m, etc",
+                max_length=8,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        "^([0-9]{1,3}h([0-5]?[0-9]m)?)$",
+                        message="Invalid format. Expected something like 1h20m, 11h5m, etc. No spaces allowed.",
+                    )
+                ],
+                verbose_name="How long have they fasted in hours and/or minutes?",
+            ),
+        ),
+    ]

meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py

@@ -0,0 +1,55 @@
+# Generated by Django 4.2.11 on 2024-05-15 17:34
+
+import uuid
+
+import _socket
+import django.db.models.deletion
+import django_audit_fields.fields.hostname_modification_field
+import django_audit_fields.fields.userfield
+import django_audit_fields.fields.uuid_auto_field
+import django_audit_fields.models.audit_model_mixin
+import django_revision.revision_field
+import edc_crf.model_mixins.crf_status_model_mixin
+import edc_model.validators.date
+import edc_protocol.validators
+import edc_utils.date
+import edc_visit_tracking.managers
+import simple_history.models
+from django.conf import settings
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("sites", "0002_alter_domain_unique"),
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+        ("meta_subject", "0185_alter_bloodresultsins_fasting_duration_str_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="healtheconomicsupdate",
+            name="singleton_field",
+            field=models.CharField(
+                editable=False,
+                help_text="auto updated for unique constraint",
+                max_length=50,
+                null=True,
+                unique=True,
+                verbose_name="subject identifier",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalhealtheconomicsupdate",
+            name="singleton_field",
+            field=models.CharField(
+                db_index=True,
+                editable=False,
+                help_text="auto updated for unique constraint",
+                max_length=50,
+                null=True,
+                verbose_name="subject identifier",
+            ),
+        ),
+    ]

meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py

@@ -0,0 +1,451 @@
+# Generated by Django 4.2.11 on 2024-05-15 17:42
+
+import uuid
+
+import _socket
+import django.db.models.deletion
+import django_audit_fields.fields.hostname_modification_field
+import django_audit_fields.fields.userfield
+import django_audit_fields.fields.uuid_auto_field
+import django_audit_fields.models.audit_model_mixin
+import django_revision.revision_field
+import edc_crf.model_mixins.crf_status_model_mixin
+import edc_model.validators.date
+import edc_protocol.validators
+import edc_utils.date
+import edc_visit_tracking.managers
+import simple_history.models
+from django.conf import settings
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+        ("sites", "0002_alter_domain_unique"),
+        ("meta_subject", "0186_healtheconomicsupdate_singleton_field_and_more"),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name="DmDiagnosis",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        editable=False,
+                        help_text="System field. Git repository tag:branch:commit.",
+                        max_length=75,
+                        null=True,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(
+                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
+                    ),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(
+                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
+                    ),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True, max_length=10, verbose_name="Device modified"
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                        primary_key=True,
+                        serialize=False,
+                    ),
+                ),
+                ("consent_model", models.CharField(blank=True, max_length=50, null=True)),
+                ("consent_version", models.CharField(blank=True, max_length=10, null=True)),
+                (
+                    "report_datetime",
+                    models.DateTimeField(
+                        default=edc_utils.date.get_utcnow,
+                        help_text="If reporting today, use today's date/time, otherwise use the date/time this information was reported.",
+                        validators=[
+                            edc_protocol.validators.datetime_not_before_study_start,
+                            edc_model.validators.date.datetime_not_future,
+                        ],
+                        verbose_name="Report Date",
+                    ),
+                ),
+                (
+                    "crf_status",
+                    models.CharField(
+                        choices=[
+                            ("INCOMPLETE", "Incomplete (some data pending)"),
+                            ("COMPLETE", "Complete"),
+                        ],
+                        default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                        help_text="If some data is still pending, flag this CRF as incomplete",
+                        max_length=25,
+                        verbose_name="CRF status",
+                    ),
+                ),
+                (
+                    "crf_status_comments",
+                    models.TextField(
+                        blank=True,
+                        help_text="for example, why some data is still pending",
+                        null=True,
+                        verbose_name="Any comments related to status of this CRF",
+                    ),
+                ),
+                ("dx_date", models.DateField(verbose_name="Date of diagnosis")),
+                (
+                    "dx_initiated_by",
+                    models.CharField(
+                        choices=[
+                            ("fbg", "Any FBG >= 7.0 mmol/L"),
+                            ("ogtt", "Annual OGTT >= 11.1 mmol/L"),
+                            ("OTHER", "Other"),
+                        ],
+                        max_length=25,
+                        verbose_name="What initiated the diagnosis",
+                    ),
+                ),
+                (
+                    "dx_tmg",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        max_length=15,
+                        verbose_name="Was the diagnosis discussed with the TMG?",
+                    ),
+                ),
+                ("dx_tmg_date", models.DateField(verbose_name="Date of TMG discussion")),
+                ("comments", models.TextField(verbose_name="Any other comments")),
+                (
+                    "site",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+                (
+                    "subject_visit",
+                    models.OneToOneField(
+                        on_delete=django.db.models.deletion.PROTECT,
+                        to="meta_subject.subjectvisit",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "Diabetes diagnosis",
+                "verbose_name_plural": "Diabetes diagnosis",
+                "abstract": False,
+                "default_permissions": ("add", "change", "delete", "view", "export", "import"),
+                "default_manager_name": "objects",
+            },
+            managers=[
+                ("objects", edc_visit_tracking.managers.CrfModelManager()),
+                ("on_site", edc_visit_tracking.managers.CrfCurrentSiteManager()),
+            ],
+        ),
+        migrations.CreateModel(
+            name="HistoricalDmDiagnosis",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        editable=False,
+                        help_text="System field. Git repository tag:branch:commit.",
+                        max_length=75,
+                        null=True,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(
+                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
+                    ),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(
+                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
+                    ),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True, max_length=10, verbose_name="Device modified"
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        db_index=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                    ),
+                ),
+                ("consent_model", models.CharField(blank=True, max_length=50, null=True)),
+                ("consent_version", models.CharField(blank=True, max_length=10, null=True)),
+                (
+                    "report_datetime",
+                    models.DateTimeField(
+                        default=edc_utils.date.get_utcnow,
+                        help_text="If reporting today, use today's date/time, otherwise use the date/time this information was reported.",
+                        validators=[
+                            edc_protocol.validators.datetime_not_before_study_start,
+                            edc_model.validators.date.datetime_not_future,
+                        ],
+                        verbose_name="Report Date",
+                    ),
+                ),
+                (
+                    "crf_status",
+                    models.CharField(
+                        choices=[
+                            ("INCOMPLETE", "Incomplete (some data pending)"),
+                            ("COMPLETE", "Complete"),
+                        ],
+                        default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                        help_text="If some data is still pending, flag this CRF as incomplete",
+                        max_length=25,
+                        verbose_name="CRF status",
+                    ),
+                ),
+                (
+                    "crf_status_comments",
+                    models.TextField(
+                        blank=True,
+                        help_text="for example, why some data is still pending",
+                        null=True,
+                        verbose_name="Any comments related to status of this CRF",
+                    ),
+                ),
+                ("dx_date", models.DateField(verbose_name="Date of diagnosis")),
+                (
+                    "dx_initiated_by",
+                    models.CharField(
+                        choices=[
+                            ("fbg", "Any FBG >= 7.0 mmol/L"),
+                            ("ogtt", "Annual OGTT >= 11.1 mmol/L"),
+                            ("OTHER", "Other"),
+                        ],
+                        max_length=25,
+                        verbose_name="What initiated the diagnosis",
+                    ),
+                ),
+                (
+                    "dx_tmg",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        max_length=15,
+                        verbose_name="Was the diagnosis discussed with the TMG?",
+                    ),
+                ),
+                ("dx_tmg_date", models.DateField(verbose_name="Date of TMG discussion")),
+                ("comments", models.TextField(verbose_name="Any other comments")),
+                (
+                    "history_id",
+                    models.UUIDField(
+                        default=uuid.uuid4, editable=False, primary_key=True, serialize=False
+                    ),
+                ),
+                ("history_date", models.DateTimeField(db_index=True)),
+                ("history_change_reason", models.CharField(max_length=100, null=True)),
+                (
+                    "history_type",
+                    models.CharField(
+                        choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
+                        max_length=1,
+                    ),
+                ),
+                (
+                    "history_user",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.SET_NULL,
+                        related_name="+",
+                        to=settings.AUTH_USER_MODEL,
+                    ),
+                ),
+                (
+                    "site",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+                (
+                    "subject_visit",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="meta_subject.subjectvisit",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "historical Diabetes diagnosis",
+                "verbose_name_plural": "historical Diabetes diagnosis",
+                "ordering": ("-history_date", "-history_id"),
+                "get_latest_by": ("history_date", "history_id"),
+            },
+            bases=(simple_history.models.HistoricalChanges, models.Model),
+        ),
+        migrations.AddIndex(
+            model_name="dmdiagnosis",
+            index=models.Index(
+                fields=["subject_visit", "site"], name="meta_subjec_subject_40b1c1_idx"
+            ),
+        ),
+        migrations.AddIndex(
+            model_name="dmdiagnosis",
+            index=models.Index(
+                fields=["subject_visit", "report_datetime"],
+                name="meta_subjec_subject_2059c2_idx",
+            ),
+        ),
+    ]