meta-edc 0.3.29__py3-none-any.whl → 0.3.30__py3-none-any.whl

meta_reports/migrations/0046_auto_20240829_0250.py

@@ -0,0 +1,54 @@
+# Generated by Django 5.0.8 on 2024-08-28 23:50
+
+import django_db_views.migration_functions
+import django_db_views.operations
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0045_auto_20240829_0248"),
+    ]
+
+    operations = [
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'onstudy_missing_values_view' as `report_model` from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.mysql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'onstudy_missing_values_view' as `report_model` from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.mysql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.postgresql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.postgresql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            atomic=False,
+        ),
+    ]

meta_reports/models/__init__.py

@@ -3,6 +3,7 @@ from .dbviews import (
     GlucoseSummary,
     MissingOgttNote,
     MissingScreeningOgtt,
+    OnStudyMissingLabValues,
     OnStudyMissingValues,
     PatientHistoryMissingBaselineCd4,
     UnattendedThreeInRow,

meta_reports/models/dbviews/__init__.py

@@ -1,5 +1,6 @@
 from .glucose_summary import GlucoseSummary
 from .missing_screening_ogtt import NOTE_STATUSES, MissingOgttNote, MissingScreeningOgtt
+from .on_study_missing_lab_values import OnStudyMissingLabValues
 from .on_study_missing_values import OnStudyMissingValues
 from .patient_history_missing_baseline_cd4 import PatientHistoryMissingBaselineCd4
 from .unattended_three_in_row import UnattendedThreeInRow

meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py

@@ -0,0 +1 @@
+from .unmanged_model import OnStudyMissingLabValues

meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py

@@ -0,0 +1,53 @@
+from edc_lab_panel.constants import FBC, LFT, LIPIDS, RFT
+from edc_lab_panel.panels import fbc_panel, lft_panel, lipids_panel, rft_panel
+from edc_qareports.sql_generator import CrfCase, RequisitionCase
+
+qa_cases = [
+    RequisitionCase(
+        label="FBC requisitioned but not entered",
+        dbtable="meta_subject_bloodresultsfbc",
+        label_lower="meta_subject.bloodresultsfbc",
+        panel=FBC,
+    ),
+    RequisitionCase(
+        label="RFT requisitioned but not entered",
+        dbtable="meta_subject_bloodresultsrft",
+        label_lower="meta_subject.bloodresultsrft",
+        panel=RFT,
+    ),
+    RequisitionCase(
+        label="LFT requisitioned but not entered",
+        dbtable="meta_subject_bloodresultslft",
+        label_lower="meta_subject.bloodresultslft",
+        panel=LFT,
+    ),
+    RequisitionCase(
+        label="LIPIDS requisitioned but not entered",
+        dbtable="meta_subject_bloodresultslipids",
+        label_lower="meta_subject.bloodresultslipids",
+        panel=LIPIDS,
+    ),
+]
+
+panels = {FBC: fbc_panel, RFT: rft_panel, LFT: lft_panel, LIPIDS: lipids_panel}
+for abbrev, panel in panels.items():
+    for utest_id in panel.utest_ids:
+        try:
+            utest_id, _ = utest_id
+        except ValueError:
+            pass
+        qa_cases.append(
+            CrfCase(
+                label=f"{abbrev.upper()}: missing {utest_id} value/units",
+                dbtable=f"meta_subject_bloodresults{abbrev.lower()}",
+                label_lower=f"meta_subject.bloodresults{abbrev.lower()}",
+                where=f"crf.{utest_id}_value is null or crf.{utest_id}_units is null",
+            )
+        )
+
+    CrfCase(
+        label="No UREA value",
+        dbtable="meta_subject_bloodresultsrft",
+        label_lower="meta_subject.bloodresultsrft",
+        where="crf.urea_value is null or crf.urea_units is null",
+    ),

meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py

@@ -0,0 +1,20 @@
+from django_db_views.db_view import DBView
+from edc_qareports.model_mixins import (
+    OnStudyMissingValuesModelMixin,
+    QaReportModelMixin,
+    qa_reports_permissions,
+)
+
+from .view_definition import get_view_definition
+
+
+class OnStudyMissingLabValues(OnStudyMissingValuesModelMixin, QaReportModelMixin, DBView):
+
+    view_definition = get_view_definition()
+
+    class Meta:
+        managed = False
+        db_table = "onstudy_missing_lab_values_view"
+        verbose_name = "Missing Lab values for on-study patient"
+        verbose_name_plural = "Missing Lab values for on-study patients"
+        default_permissions = qa_reports_permissions

meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py

@@ -0,0 +1,17 @@
+from edc_qareports.sql_generator import SqlViewGenerator
+
+from .qa_cases import qa_cases
+
+
+def get_view_definition() -> dict:
+    subquery = " UNION ".join([qa_case.sql for qa_case in qa_cases])
+    sql_view = SqlViewGenerator(
+        report_model="onstudy_missing_lab_values_view",
+        ordering=["subject_identifier", "site_id"],
+    )
+
+    return {
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
+    }

meta_reports/models/dbviews/on_study_missing_values/qa_cases.py

@@ -1,53 +1,55 @@
+from edc_constants.constants import OTHER, YES
+from edc_qareports.sql_generator import CrfCase
+
 qa_cases = [
-    dict(
+    CrfCase(
         label="No HIV Diagnosis date",
         dbtable="meta_subject_patienthistory",
         label_lower="meta_subject.patienthistory",
         fld_name="hiv_diagnosis_date",
     ),
-    dict(
-        label="No VL value",
-        dbtable="meta_subject_patienthistory",
-        label_lower="meta_subject.patienthistory",
-        fld_name="viral_load",
-    ),
-    dict(
-        label="No VL date",
+    CrfCase(
+        label="No VL value or VL date",
         dbtable="meta_subject_patienthistory",
         label_lower="meta_subject.patienthistory",
         fld_name="viral_load_date",
+        where="crf.viral_load is null or crf.viral_load_date is null",
     ),
-    dict(
-        label="No CD4 value",
+    CrfCase(
+        label="No CD4 value or CD4 date",
         dbtable="meta_subject_patienthistory",
         label_lower="meta_subject.patienthistory",
-        fld_name="cd4",
+        where="crf.cd4 is null or crf.cd4_date is null",
     ),
-    dict(
-        label="No CD4 date",
-        dbtable="meta_subject_patienthistory",
-        label_lower="meta_subject.patienthistory",
-        fld_name="cd4_date",
-    ),
-    dict(
+    CrfCase(
         label="No current ARV start date",
         dbtable="meta_subject_patienthistory",
         label_lower="meta_subject.patienthistory",
         fld_name="current_arv_regimen_start_date",
     ),
-    dict(
+    CrfCase(
         label="No current ARV start date but previous ARV is YES",
         dbtable="meta_subject_patienthistory",
         label_lower="meta_subject.patienthistory",
         where=(
-            'crf.has_previous_arv_regimen="YES" and crf.current_arv_regimen_start_date is null'
+            f"crf.has_previous_arv_regimen ='{YES}' and "
+            "crf.current_arv_regimen_start_date is null"
         ),
     ),
-    dict(
+    CrfCase(
         label="Other current ARV regimen missing",
         dbtable="meta_subject_patienthistory",
         label_lower="meta_subject.patienthistory",
-        where='crf.other_current_arv_regimen is null and arvregimen.name="OTHER"',
+        where=f"crf.other_current_arv_regimen is null and arvregimen.name='{OTHER}'",
         list_tables=[("current_arv_regimen_id", "meta_lists_arvregimens", "arvregimen")],
     ),
+    CrfCase(
+        label="FBG/OGTT: missing OGTT",
+        dbtable="meta_subject_glucose",
+        label_lower="meta_subject.glucose",
+        where=(
+            "(crf.fbg_value is not null and crf.ogtt_value is null) "
+            f"and ogtt_performed='{YES}'"
+        ),
+    ),
 ]

meta_reports/models/dbviews/on_study_missing_values/view_definition.py

@@ -1,13 +1,10 @@
-from edc_qareports.sql_generator import (
-    SqlViewGenerator,
-    generate_subquery_for_missing_values,
-)
+from edc_qareports.sql_generator import SqlViewGenerator
 
 from .qa_cases import qa_cases
 
 
 def get_view_definition() -> dict:
-    subquery = generate_subquery_for_missing_values(qa_cases)
+    subquery = " UNION ".join([qa_case.sql for qa_case in qa_cases])
     sql_view = SqlViewGenerator(
         report_model="onstudy_missing_values_view",
         ordering=["subject_identifier", "site_id"],

meta_reports/tests/test_sql_gen.py

@@ -0,0 +1,5 @@
+from django.test import TestCase
+
+
+class TestSqlGen(TestCase):
+    pass

meta_subject/action_items.py

@@ -8,7 +8,7 @@ from edc_lab_results.action_items import (
     BloodResultsFbcAction,
     BloodResultsHba1cAction,
     BloodResultsLftAction,
-    BloodResultsLipidAction,
+    BloodResultsLipidsAction,
 )
 from edc_lab_results.action_items import (
     BloodResultsRftAction as BaseBloodResultsRftAction,
@@ -175,7 +175,7 @@ class DmFollowAction(ActionWithNotification):
 def register_actions():
     for action_item_cls in [
         BloodResultsFbcAction,
-        BloodResultsLipidAction,
+        BloodResultsLipidsAction,
         BloodResultsLftAction,
         BloodResultsRftAction,
         BloodResultsHba1cAction,

meta_subject/admin/__init__.py

@@ -3,6 +3,7 @@ from .birth_outcome_admin import BirthOutcomesAdmin
 from .blood_results import (
     BloodResultsFbcAdmin,
     BloodResultsLftAdmin,
+    BloodResultsLipidsAdmin,
     BloodResultsRftAdmin,
 )
 from .complications_admin import ComplicationsAdmin

meta_subject/admin/blood_results/__init__.py

@@ -2,5 +2,5 @@ from .blood_results_fbc_admin import BloodResultsFbcAdmin
 from .blood_results_hba1c_admin import BloodResultsHba1cAdmin
 from .blood_results_ins_admin import BloodResultsInsAdmin
 from .blood_results_lft_admin import BloodResultsLftAdmin
-from .blood_results_lipid_admin import BloodResultsLipidAdmin
+from .blood_results_lipids_admin import BloodResultsLipidsAdmin
 from .blood_results_rft_admin import BloodResultsRftAdmin

meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py}

@@ -5,19 +5,19 @@ from edc_lab_results.fieldsets import BloodResultFieldset
 from edc_model_admin.history import SimpleHistoryAdmin
 
 from ...admin_site import meta_subject_admin
-from ...forms import BloodResultsLipidForm
-from ...models import BloodResultsLipid
+from ...forms import BloodResultsLipidsForm
+from ...models import BloodResultsLipids
 from ..modeladmin import CrfModelAdminMixin
 
 
-@admin.register(BloodResultsLipid, site=meta_subject_admin)
-class BloodResultsLipidAdmin(
+@admin.register(BloodResultsLipids, site=meta_subject_admin)
+class BloodResultsLipidsAdmin(
     BloodResultsModelAdminMixin, CrfModelAdminMixin, SimpleHistoryAdmin
 ):
-    form = BloodResultsLipidForm
+    form = BloodResultsLipidsForm
     fieldsets = BloodResultFieldset(
-        BloodResultsLipid.lab_panel,
-        model_cls=BloodResultsLipid,
+        BloodResultsLipids.lab_panel,
+        model_cls=BloodResultsLipids,
         extra_fieldsets=[
             (-1, action_fieldset_tuple),
         ],

meta_subject/forms/__init__.py

@@ -4,7 +4,7 @@ from .blood_results import (
     BloodResultsHba1cForm,
     BloodResultsInsForm,
     BloodResultsLftForm,
-    BloodResultsLipidForm,
+    BloodResultsLipidsForm,
     BloodResultsRftForm,
 )
 from .complications_glycemia_form import ComplicationsGlycemiaForm

meta_subject/forms/blood_results/__init__.py

@@ -2,5 +2,5 @@ from .blood_results_fbc_form import BloodResultsFbcForm
 from .blood_results_hba1c_form import BloodResultsHba1cForm
 from .blood_results_ins_form import BloodResultsInsForm
 from .blood_results_lft_form import BloodResultsLftForm
-from .blood_results_lipid_form import BloodResultsLipidForm
+from .blood_results_lipids_form import BloodResultsLipidsForm
 from .blood_results_rft_form import BloodResultsRftForm

meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py}

@@ -5,16 +5,16 @@ from edc_crf.modelform_mixins import CrfModelFormMixin
 from edc_lab_panel.panels import lipids_panel
 from edc_lab_results.form_validator_mixins import BloodResultsFormValidatorMixin
 
-from ...models import BloodResultsLipid
+from ...models import BloodResultsLipids
 
 
-class BloodResultsLipidFormValidator(BloodResultsFormValidatorMixin, CrfFormValidator):
+class BloodResultsLipidsFormValidator(BloodResultsFormValidatorMixin, CrfFormValidator):
     panel = lipids_panel
 
 
-class BloodResultsLipidForm(ActionItemCrfFormMixin, CrfModelFormMixin, forms.ModelForm):
-    form_validator_cls = BloodResultsLipidFormValidator
+class BloodResultsLipidsForm(ActionItemCrfFormMixin, CrfModelFormMixin, forms.ModelForm):
+    form_validator_cls = BloodResultsLipidsFormValidator
 
     class Meta(ActionItemCrfFormMixin.Meta):
-        model = BloodResultsLipid
+        model = BloodResultsLipids
         fields = "__all__"

meta_subject/migrations/0212_auto_20240827_2222.py

@@ -0,0 +1,23 @@
+# Generated by Django 5.0.8 on 2024-08-27 19:22
+
+from django.db import migrations
+from django.db.migrations import RunPython
+from edc_constants.constants import NO, YES
+
+
+def update_old_fasting_choices(apps, schema_editor):
+    result = {"fasting": 0, "non_fasting": 0}
+    model_cls = apps.get_model("meta_subject.glucosefbg")
+    result["fasting"] = model_cls.objects.filter(fasting="fasting").update(fasting=YES)
+    result["non_fasting"] = model_cls.objects.filter(fasting="non_fasting").update(fasting=NO)
+    print(f"Updated: results are {result}")
+    print("Done.")
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0211_dmendpoint_endpoint_reached_and_more"),
+    ]
+
+    operations = [RunPython(update_old_fasting_choices)]

meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py

@@ -0,0 +1,35 @@
+# Generated by Django 5.0.8 on 2024-08-28 19:54
+
+from django.conf import settings
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
+        ("meta_subject", "0212_auto_20240827_2222"),
+        ("sites", "0002_alter_domain_unique"),
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+    ]
+
+    operations = [
+        migrations.RenameModel(
+            old_name="BloodResultsLipid",
+            new_name="BloodResultsLipids",
+        ),
+        migrations.RenameModel(
+            old_name="HistoricalBloodResultsLipid",
+            new_name="HistoricalBloodResultsLipids",
+        ),
+        migrations.RenameIndex(
+            model_name="bloodresultslipids",
+            new_name="meta_subjec_subject_eff3e6_idx",
+            old_name="meta_subjec_subject_296de9_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="bloodresultslipids",
+            new_name="meta_subjec_subject_49b971_idx",
+            old_name="meta_subjec_subject_9692a2_idx",
+        ),
+    ]

meta_subject/models/__init__.py

@@ -4,7 +4,7 @@ from .blood_results import (
     BloodResultsHba1c,
     BloodResultsIns,
     BloodResultsLft,
-    BloodResultsLipid,
+    BloodResultsLipids,
     BloodResultsRft,
 )
 from .complications import Complications

meta_subject/models/blood_results/__init__.py

@@ -2,5 +2,5 @@ from .blood_results_fbc import BloodResultsFbc
 from .blood_results_hba1c import BloodResultsHba1c
 from .blood_results_ins import BloodResultsIns
 from .blood_results_lft import BloodResultsLft
-from .blood_results_lipid import BloodResultsLipid
+from .blood_results_lipids import BloodResultsLipids
 from .blood_results_rft import BloodResultsRft

meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py}

@@ -2,7 +2,7 @@ from django.db import models
 from edc_crf.model_mixins import CrfStatusModelMixin
 from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
 from edc_lab_panel.panels import lipids_panel
-from edc_lab_results import BLOOD_RESULTS_LIPID_ACTION
+from edc_lab_results import BLOOD_RESULTS_LIPIDS_ACTION
 from edc_lab_results.model_mixins import (
     BloodResultsModelMixin,
     CholModelMixin,
@@ -15,7 +15,7 @@ from edc_model.models import BaseUuidModel
 from ...model_mixins import CrfWithActionModelMixin
 
 
-class BloodResultsLipid(
+class BloodResultsLipids(
     CrfWithActionModelMixin,
     HdlModelMixin,
     LdlModelMixin,
@@ -26,7 +26,7 @@ class BloodResultsLipid(
     CrfStatusModelMixin,
     BaseUuidModel,
 ):
-    action_name = BLOOD_RESULTS_LIPID_ACTION
+    action_name = BLOOD_RESULTS_LIPIDS_ACTION
     tracking_identifier_prefix = "LP"
     lab_panel = lipids_panel
 

meta_visit_schedule/visit_schedules/phase_three/crfs.py

@@ -7,7 +7,7 @@ crfs_prn = CrfCollection(
     Crf(show_order=235, model="meta_subject.bloodresultshba1c"),
     Crf(show_order=245, model="meta_subject.bloodresultsrft"),
     Crf(show_order=255, model="meta_subject.bloodresultslft"),
-    Crf(show_order=265, model="meta_subject.bloodresultslipid"),
+    Crf(show_order=265, model="meta_subject.bloodresultslipids"),
     Crf(show_order=275, model="meta_subject.hepatitistest"),
     Crf(show_order=285, model="meta_subject.malariatest"),
     Crf(show_order=295, model="meta_subject.urinedipsticktest"),
@@ -40,7 +40,7 @@ crfs_d1 = CrfCollection(
     Crf(show_order=230, model="meta_subject.bloodresultsrft"),
     Crf(show_order=240, model="meta_subject.bloodresultslft"),
     Crf(show_order=250, model="meta_subject.bloodresultsfbc"),
-    Crf(show_order=260, model="meta_subject.bloodresultslipid"),
+    Crf(show_order=260, model="meta_subject.bloodresultslipids"),
     Crf(show_order=360, model="meta_subject.malariatest"),
     Crf(show_order=370, model="meta_subject.urinedipsticktest"),
     Crf(show_order=400, model="meta_subject.studymedication"),
@@ -128,7 +128,7 @@ crfs_12m = CrfCollection(
     Crf(show_order=220, model="meta_subject.bloodresultsrft"),
     Crf(show_order=230, model="meta_subject.bloodresultslft"),
     Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
-    Crf(show_order=250, model="meta_subject.bloodresultslipid"),
+    Crf(show_order=250, model="meta_subject.bloodresultslipids"),
     Crf(show_order=300, model="meta_subject.studymedication"),
     Crf(show_order=310, model="meta_subject.medicationadherence"),
     Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
@@ -185,7 +185,7 @@ crfs_24m = CrfCollection(
     Crf(show_order=220, model="meta_subject.bloodresultsrft"),
     Crf(show_order=230, model="meta_subject.bloodresultslft"),
     Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
-    Crf(show_order=250, model="meta_subject.bloodresultslipid"),
+    Crf(show_order=250, model="meta_subject.bloodresultslipids"),
     Crf(show_order=300, model="meta_subject.studymedication"),
     Crf(show_order=310, model="meta_subject.medicationadherence"),
     Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
@@ -239,7 +239,7 @@ crfs_36m = CrfCollection(
     Crf(show_order=220, model="meta_subject.bloodresultsrft"),
     Crf(show_order=230, model="meta_subject.bloodresultslft"),
     Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
-    Crf(show_order=250, model="meta_subject.bloodresultslipid"),
+    Crf(show_order=250, model="meta_subject.bloodresultslipids"),
     Crf(show_order=300, model="meta_subject.studymedication"),
     Crf(show_order=310, model="meta_subject.medicationadherence"),
     Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
@@ -293,7 +293,7 @@ crfs_48m = CrfCollection(
     Crf(show_order=220, model="meta_subject.bloodresultsrft"),
     Crf(show_order=230, model="meta_subject.bloodresultslft"),
     Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
-    Crf(show_order=250, model="meta_subject.bloodresultslipid"),
+    Crf(show_order=250, model="meta_subject.bloodresultslipids"),
     Crf(show_order=300, model="meta_subject.studymedication"),
     Crf(show_order=310, model="meta_subject.medicationadherence"),
     Crf(show_order=460, model="meta_subject.eq5d3l", required=False),