meta-edc 0.3.28__py3-none-any.whl → 0.3.30__py3-none-any.whl

meta_reports/migrations/0046_auto_20240829_0250.py

@@ -0,0 +1,54 @@
+# Generated by Django 5.0.8 on 2024-08-28 23:50
+
+import django_db_views.migration_functions
+import django_db_views.operations
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0045_auto_20240829_0248"),
+    ]
+
+    operations = [
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'onstudy_missing_values_view' as `report_model` from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.mysql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'onstudy_missing_values_view' as `report_model` from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.mysql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.postgresql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.postgresql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            atomic=False,
+        ),
+    ]

meta_reports/models/__init__.py

@@ -3,6 +3,8 @@ from .dbviews import (
     GlucoseSummary,
     MissingOgttNote,
     MissingScreeningOgtt,
+    OnStudyMissingLabValues,
+    OnStudyMissingValues,
     PatientHistoryMissingBaselineCd4,
     UnattendedThreeInRow,
     UnattendedThreeInRow2,

meta_reports/models/dbviews/__init__.py

@@ -1,5 +1,7 @@
 from .glucose_summary import GlucoseSummary
 from .missing_screening_ogtt import NOTE_STATUSES, MissingOgttNote, MissingScreeningOgtt
+from .on_study_missing_lab_values import OnStudyMissingLabValues
+from .on_study_missing_values import OnStudyMissingValues
 from .patient_history_missing_baseline_cd4 import PatientHistoryMissingBaselineCd4
 from .unattended_three_in_row import UnattendedThreeInRow
 from .unattended_three_in_row2 import UnattendedThreeInRow2

meta_reports/models/dbviews/glucose_summary/view_definition.py

@@ -1,73 +1,28 @@
-mysql_view: str = """ # noqa
-select *, uuid() as id, now() as created, 'meta_reports.glucose_summary_view' as report_model
-from (
-    select v.subject_identifier, fbg_value, fbg_datetime, null as 'ogtt_value', null as 'ogtt_datetime',
-    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as 'fasted',
-    fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
-    from meta_subject_glucosefbg as fbg
-    left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
-    left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
-    UNION
-    select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,
-    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as 'fasted',
-    fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
-    from meta_subject_glucose as fbg
-    left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
-    left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
-) as A
-order by subject_identifier, fbg_datetime;
-"""
+from edc_qareports.sql_generator import SqlViewGenerator
 
-pg_view: str = """ # noqa
-select *, get_random_uuid() as id, now() as created, 'meta_reports.glucose_summary_view' as report_model
-from (
-    select v.subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,
-    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,
-    fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
-    from meta_subject_glucosefbg as fbg
-    left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
-    left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
-    UNION
-    select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,
-    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,
-    fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
-    from meta_subject_glucose as fbg
-    left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
-    left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
-) as A
-order by subject_identifier, fbg_datetime;
-"""
 
-sqlite3_view: str = """ # noqa
-SELECT *, lower(
-    hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||
-    substr(hex( randomblob(2)), 2) || '-' ||
-    substr('AB89', 1 + (abs(random()) % 4) , 1)  ||
-    substr(hex(randomblob(2)), 2) || '-' ||
-    hex(randomblob(6))
-  ) as id, datetime() as `created`, 'meta_reports.glucose_summary_view' as report_model
-from (
-    select v.subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,
-    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,
+def get_view_definition() -> dict:
+    subquery = """
+    select v.subject_identifier, fbg_value, fbg_datetime, null as `ogtt_value`, null as `ogtt_datetime`,
+    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as `fasted`,
     fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
     from meta_subject_glucosefbg as fbg
     left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
     left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
     UNION
     select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,
-    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,
+    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as `fasted`,
     fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
     from meta_subject_glucose as fbg
     left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
     left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
-    ) as A
-order by subject_identifier, fbg_datetime;
-"""
-
-
-def get_view_definition() -> dict:
+    """  # noqa
+    sql_view = SqlViewGenerator(
+        report_model="meta_reports.glucose_summary_view",
+        ordering=["subject_identifier", "site_id"],
+    )
     return {
-        "django.db.backends.mysql": mysql_view,
-        "django.db.backends.postgresql": pg_view,
-        "django.db.backends.sqlite3": sqlite3_view,
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
     }

meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py

@@ -1,55 +1,20 @@
-mysql_view: str = """ # noqa
-    select *, uuid() as id, now() as created,
-    'meta_reports.missing_screening_ogtt_view' as report_model
-      from (
-        select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,
-        converted_fbg_value as fbg_value,  converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,
-        p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented,
-        screening_identifier as subject_identifier, id as original_id
-        from meta_screening_subjectscreening
-        where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != "Yes"
-    ) as A
-    order by screening_identifier
-    """
+from edc_qareports.sql_generator import SqlViewGenerator
 
-pg_view: str = """ # noqa
-    select *, get_random_uuid() as id, now() as created,
-    'meta_reports.missing_screening_ogtt_view' as report_model
-      from (
-        select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,
-        converted_fbg_value as fbg_value,  converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,
-        p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented,
-        screening_identifier as subject_identifier, id as original_id
-        from meta_screening_subjectscreening
-        where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != "Yes"
-    ) as A
-    order by screening_identifier
-"""
 
-sqlite3_view = """ # noqa
-SELECT *, lower(
-    hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||
-    substr(hex( randomblob(2)), 2) || '-' ||
-    substr('AB89', 1 + (abs(random()) % 4) , 1)  ||
-    substr(hex(randomblob(2)), 2) || '-' ||
-    hex(randomblob(6))
-  ) as id, datetime() as `created`,
-    'meta_reports.missing_screening_ogtt_view' as report_model
-      from (
-        select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,
-        converted_fbg_value as fbg_value,  converted_ogtt_value as ogtt_value, fbg2_value, ogtt2_value,
-        repeat_glucose_performed as repeated, p3_ltfu, fbg2_datetime, ogtt2_datetime, consented,
-        screening_identifier as subject_identifier, id as original_id
+def get_view_definition() -> dict:
+    subquery = """select screening_identifier, site_id, report_datetime as `screening_datetime`, fbg_datetime,
+        converted_fbg_value as `fbg_value`,  converted_ogtt_value as `ogtt_value`, fbg2_value, ogtt2_value,
+        repeat_glucose_performed as `repeated`, p3_ltfu, fbg2_datetime, ogtt2_datetime, consented,
+        screening_identifier as `subject_identifier`, id as `original_id`
         from meta_screening_subjectscreening
         where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != "Yes"
-    ) as A
-    order by screening_identifier
-"""
-
-
-def get_view_definition() -> dict:
+        """  # noqa
+    sql_view = SqlViewGenerator(
+        report_model="meta_reports.missing_screening_ogtt_view",
+        ordering=["subject_identifier", "site_id"],
+    )
     return {
-        "django.db.backends.mysql": mysql_view,
-        "django.db.backends.postgresql": pg_view,
-        "django.db.backends.sqlite3": sqlite3_view,
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
     }

meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py

@@ -0,0 +1 @@
+from .unmanged_model import OnStudyMissingLabValues

meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py

@@ -0,0 +1,53 @@
+from edc_lab_panel.constants import FBC, LFT, LIPIDS, RFT
+from edc_lab_panel.panels import fbc_panel, lft_panel, lipids_panel, rft_panel
+from edc_qareports.sql_generator import CrfCase, RequisitionCase
+
+qa_cases = [
+    RequisitionCase(
+        label="FBC requisitioned but not entered",
+        dbtable="meta_subject_bloodresultsfbc",
+        label_lower="meta_subject.bloodresultsfbc",
+        panel=FBC,
+    ),
+    RequisitionCase(
+        label="RFT requisitioned but not entered",
+        dbtable="meta_subject_bloodresultsrft",
+        label_lower="meta_subject.bloodresultsrft",
+        panel=RFT,
+    ),
+    RequisitionCase(
+        label="LFT requisitioned but not entered",
+        dbtable="meta_subject_bloodresultslft",
+        label_lower="meta_subject.bloodresultslft",
+        panel=LFT,
+    ),
+    RequisitionCase(
+        label="LIPIDS requisitioned but not entered",
+        dbtable="meta_subject_bloodresultslipids",
+        label_lower="meta_subject.bloodresultslipids",
+        panel=LIPIDS,
+    ),
+]
+
+panels = {FBC: fbc_panel, RFT: rft_panel, LFT: lft_panel, LIPIDS: lipids_panel}
+for abbrev, panel in panels.items():
+    for utest_id in panel.utest_ids:
+        try:
+            utest_id, _ = utest_id
+        except ValueError:
+            pass
+        qa_cases.append(
+            CrfCase(
+                label=f"{abbrev.upper()}: missing {utest_id} value/units",
+                dbtable=f"meta_subject_bloodresults{abbrev.lower()}",
+                label_lower=f"meta_subject.bloodresults{abbrev.lower()}",
+                where=f"crf.{utest_id}_value is null or crf.{utest_id}_units is null",
+            )
+        )
+
+    CrfCase(
+        label="No UREA value",
+        dbtable="meta_subject_bloodresultsrft",
+        label_lower="meta_subject.bloodresultsrft",
+        where="crf.urea_value is null or crf.urea_units is null",
+    ),

meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py

@@ -0,0 +1,20 @@
+from django_db_views.db_view import DBView
+from edc_qareports.model_mixins import (
+    OnStudyMissingValuesModelMixin,
+    QaReportModelMixin,
+    qa_reports_permissions,
+)
+
+from .view_definition import get_view_definition
+
+
+class OnStudyMissingLabValues(OnStudyMissingValuesModelMixin, QaReportModelMixin, DBView):
+
+    view_definition = get_view_definition()
+
+    class Meta:
+        managed = False
+        db_table = "onstudy_missing_lab_values_view"
+        verbose_name = "Missing Lab values for on-study patient"
+        verbose_name_plural = "Missing Lab values for on-study patients"
+        default_permissions = qa_reports_permissions

meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py

@@ -0,0 +1,17 @@
+from edc_qareports.sql_generator import SqlViewGenerator
+
+from .qa_cases import qa_cases
+
+
+def get_view_definition() -> dict:
+    subquery = " UNION ".join([qa_case.sql for qa_case in qa_cases])
+    sql_view = SqlViewGenerator(
+        report_model="onstudy_missing_lab_values_view",
+        ordering=["subject_identifier", "site_id"],
+    )
+
+    return {
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
+    }

meta_reports/models/dbviews/on_study_missing_values/__init__.py

@@ -0,0 +1 @@
+from .unmanged_model import OnStudyMissingValues

meta_reports/models/dbviews/on_study_missing_values/qa_cases.py

@@ -0,0 +1,55 @@
+from edc_constants.constants import OTHER, YES
+from edc_qareports.sql_generator import CrfCase
+
+qa_cases = [
+    CrfCase(
+        label="No HIV Diagnosis date",
+        dbtable="meta_subject_patienthistory",
+        label_lower="meta_subject.patienthistory",
+        fld_name="hiv_diagnosis_date",
+    ),
+    CrfCase(
+        label="No VL value or VL date",
+        dbtable="meta_subject_patienthistory",
+        label_lower="meta_subject.patienthistory",
+        fld_name="viral_load_date",
+        where="crf.viral_load is null or crf.viral_load_date is null",
+    ),
+    CrfCase(
+        label="No CD4 value or CD4 date",
+        dbtable="meta_subject_patienthistory",
+        label_lower="meta_subject.patienthistory",
+        where="crf.cd4 is null or crf.cd4_date is null",
+    ),
+    CrfCase(
+        label="No current ARV start date",
+        dbtable="meta_subject_patienthistory",
+        label_lower="meta_subject.patienthistory",
+        fld_name="current_arv_regimen_start_date",
+    ),
+    CrfCase(
+        label="No current ARV start date but previous ARV is YES",
+        dbtable="meta_subject_patienthistory",
+        label_lower="meta_subject.patienthistory",
+        where=(
+            f"crf.has_previous_arv_regimen ='{YES}' and "
+            "crf.current_arv_regimen_start_date is null"
+        ),
+    ),
+    CrfCase(
+        label="Other current ARV regimen missing",
+        dbtable="meta_subject_patienthistory",
+        label_lower="meta_subject.patienthistory",
+        where=f"crf.other_current_arv_regimen is null and arvregimen.name='{OTHER}'",
+        list_tables=[("current_arv_regimen_id", "meta_lists_arvregimens", "arvregimen")],
+    ),
+    CrfCase(
+        label="FBG/OGTT: missing OGTT",
+        dbtable="meta_subject_glucose",
+        label_lower="meta_subject.glucose",
+        where=(
+            "(crf.fbg_value is not null and crf.ogtt_value is null) "
+            f"and ogtt_performed='{YES}'"
+        ),
+    ),
+]

meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py

@@ -0,0 +1,20 @@
+from django_db_views.db_view import DBView
+from edc_qareports.model_mixins import (
+    OnStudyMissingValuesModelMixin,
+    QaReportModelMixin,
+    qa_reports_permissions,
+)
+
+from .view_definition import get_view_definition
+
+
+class OnStudyMissingValues(OnStudyMissingValuesModelMixin, QaReportModelMixin, DBView):
+
+    view_definition = get_view_definition()
+
+    class Meta:
+        managed = False
+        db_table = "onstudy_missing_values_view"
+        verbose_name = "Missing values for on-study patient"
+        verbose_name_plural = "Missing values for on-study patients"
+        default_permissions = qa_reports_permissions

meta_reports/models/dbviews/on_study_missing_values/view_definition.py

@@ -0,0 +1,17 @@
+from edc_qareports.sql_generator import SqlViewGenerator
+
+from .qa_cases import qa_cases
+
+
+def get_view_definition() -> dict:
+    subquery = " UNION ".join([qa_case.sql for qa_case in qa_cases])
+    sql_view = SqlViewGenerator(
+        report_model="onstudy_missing_values_view",
+        ordering=["subject_identifier", "site_id"],
+    )
+
+    return {
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
+    }

meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py

@@ -1,55 +1,21 @@
-mysql_view: str = """
-    select *, uuid() as id, now() as created,
-    'meta_reports.patienthistorymissingbaselinecd4' as report_model
-      from (
-        select subject_identifier, v.visit_code, v.visit_code_sequence,cd4,
-          cd4_date, crf.site_id, crf.user_created, crf.user_modified,
-          crf.modified
-        from meta_subject_patienthistory as crf
-        left join meta_subject_subjectvisit as v on crf.subject_visit_id=v.id
-        where cd4 is null or cd4_date is null
-    ) as A
-    order by subject_identifier
-    """
+from edc_qareports.sql_generator import SqlViewGenerator
 
-pg_view: str = """
-    select *, get_random_uuid() as id, now() as created,
-    'meta_reports.patienthistorymissingbaselinecd4' as report_model
-      from (
-        select subject_identifier, v.visit_code, v.visit_code_sequence,cd4,
-          cd4_date, crf.site_id, crf.user_created, crf.user_modified,
-          crf.modified
-        from meta_subject_patienthistory as crf
-        left join meta_subject_subjectvisit as v on crf.subject_visit_id=v.id
-        where cd4 is null or cd4_date is null
-    ) as A
-    order by subject_identifier
-"""
 
-sqlite3_view = """
-SELECT *, lower(
-    hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||
-    substr(hex( randomblob(2)), 2) || '-' ||
-    substr('AB89', 1 + (abs(random()) % 4) , 1)  ||
-    substr(hex(randomblob(2)), 2) || '-' ||
-    hex(randomblob(6))
-  ) as id, datetime() as `created`,
-  'meta_reports.patienthistorymissingbaselinecd4' as report_model
-      from (
+def get_view_definition() -> dict:
+    subquery = """
         select subject_identifier, v.visit_code, v.visit_code_sequence,cd4,
-          cd4_date, crf.site_id, crf.user_created, crf.user_modified,
-          crf.modified
+        cd4_date, crf.site_id, crf.user_created, crf.user_modified,
+        crf.modified
         from meta_subject_patienthistory as crf
         left join meta_subject_subjectvisit as v on crf.subject_visit_id=v.id
         where cd4 is null or cd4_date is null
-    ) as A
-    order by subject_identifier
-"""
-
-
-def get_view_definition() -> dict:
+        """
+    sql_view = SqlViewGenerator(
+        report_model="meta_reports.patienthistorymissingbaselinecd4",
+        ordering=["subject_identifier", "site_id"],
+    )
     return {
-        "django.db.backends.mysql": mysql_view,
-        "django.db.backends.postgresql": pg_view,
-        "django.db.backends.sqlite3": sqlite3_view,
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
     }