meta-edc 0.3.23__py3-none-any.whl → 0.3.25__py3-none-any.whl

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Files changed (64) hide show
  1. meta_analytics/dataframes/glucose_endpoints/constants.py +8 -6
  2. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +315 -258
  3. meta_analytics/dataframes/glucose_endpoints/utils.py +12 -13
  4. meta_edc/__init__.py +3 -0
  5. meta_edc/celery/__init__.py +2 -0
  6. {meta_edc-0.3.23.dist-info → meta_edc-0.3.25.dist-info}/METADATA +2 -2
  7. {meta_edc-0.3.23.dist-info → meta_edc-0.3.25.dist-info}/RECORD +57 -37
  8. meta_prn/tests/tests/test_dm_referral.py +2 -2
  9. meta_reports/__init__.py +1 -1
  10. meta_reports/admin/__init__.py +3 -1
  11. meta_reports/admin/endpoints_admin.py +5 -102
  12. meta_reports/admin/endpoints_all_admin.py +13 -0
  13. meta_reports/admin/list_filters.py +30 -0
  14. meta_reports/admin/modeladmin_mixins.py +116 -0
  15. meta_reports/admin/unmanaged/__init__.py +1 -0
  16. meta_reports/admin/unmanaged/glucose_summary_admin.py +116 -0
  17. meta_reports/migrations/0024_glucosesummary.py +38 -0
  18. meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
  19. meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
  20. meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
  21. meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
  22. meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
  23. meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
  24. meta_reports/migrations/0031_endpointsproxy.py +25 -0
  25. meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
  26. meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
  27. meta_reports/models/__init__.py +2 -0
  28. meta_reports/models/dbviews/__init__.py +1 -0
  29. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  30. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
  31. meta_reports/models/dbviews/glucose_summary/view_definition.py +73 -0
  32. meta_reports/models/endpoints.py +3 -0
  33. meta_reports/models/endpoints_proxy.py +11 -0
  34. meta_reports/tasks.py +3 -1
  35. meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
  36. meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
  37. meta_reports/templates/meta_reports/{endpoints_changelist_note.html → endpoints_change_list_note.html} +3 -1
  38. meta_subject/admin/__init__.py +1 -1
  39. meta_subject/admin/diabetes/__init__.py +1 -1
  40. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  41. meta_subject/form_validators/__init__.py +1 -1
  42. meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
  43. meta_subject/forms/__init__.py +1 -1
  44. meta_subject/forms/diabetes/__init__.py +1 -2
  45. meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
  46. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
  47. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  48. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  49. meta_subject/models/__init__.py +1 -1
  50. meta_subject/models/diabetes/__init__.py +1 -2
  51. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  52. meta_subject/models/glucose.py +4 -1
  53. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -1
  54. meta_subject/admin/diabetes/dm_diagnosis_admin.py +0 -89
  55. meta_subject/form_validators/dm_diagnosis_form_validator.py +0 -38
  56. meta_subject/form_validators/dm_dx_result_form_validator.py +0 -7
  57. meta_subject/forms/diabetes/dm_diagnosis_form.py +0 -13
  58. meta_subject/forms/diabetes/dm_dx_result_form.py +0 -11
  59. meta_subject/models/diabetes/dm_diagnosis.py +0 -50
  60. meta_subject/models/diabetes/dm_dx_result.py +0 -70
  61. {meta_edc-0.3.23.dist-info → meta_edc-0.3.25.dist-info}/AUTHORS +0 -0
  62. {meta_edc-0.3.23.dist-info → meta_edc-0.3.25.dist-info}/LICENSE +0 -0
  63. {meta_edc-0.3.23.dist-info → meta_edc-0.3.25.dist-info}/WHEEL +0 -0
  64. {meta_edc-0.3.23.dist-info → meta_edc-0.3.25.dist-info}/top_level.txt +0 -0
meta_analytics/dataframes/glucose_endpoints/constants.py CHANGED
@@ -1,8 +1,10 @@
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- OGTT_THRESHOLD_MET = "OGTT >= 11.1"
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- EOS_DM_MET = "EOS - Patient developed diabetes"
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- CASE_OGTT = 1
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  CASE_EOS = 7
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+ CASE_FBGS_WITH_FIRST_OGTT = 2
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+ CASE_FBGS_WITH_SECOND_OGTT = 3
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  CASE_FBG_ONLY = 4
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+ CASE_OGTT = 1
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+ EOS_DM_MET = "EOS - Patient developed diabetes"
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+ OGTT_THRESHOLD_MET = "OGTT >= 11.1"
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  endpoint_columns = [
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  "subject_identifier",
@@ -24,8 +26,8 @@ endpoint_columns = [
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  endpoint_cases = {
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  CASE_OGTT: OGTT_THRESHOLD_MET,
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- 2: "FBG >= 7 x 2, first OGTT<=11.1",
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- 3: "FBG >= 7 x 2, second OGTT<=11.1",
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- 4: "FBG >= 7 x 2, OGTT not considered",
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+ CASE_FBGS_WITH_FIRST_OGTT: "FBG >= 7 x 2, first OGTT<=11.1",
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+ CASE_FBGS_WITH_SECOND_OGTT: "FBG >= 7 x 2, second OGTT<=11.1",
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+ CASE_FBG_ONLY: "FBG >= 7 x 2, OGTT not considered",
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  CASE_EOS: EOS_DM_MET,
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  }