memory-foam 0.0.1__py3-none-any.whl

memory_foam/__init__.py

@@ -0,0 +1,17 @@
+from typing import Iterator, Optional
+from .client import Client
+
+from .file import File, FilePointer
+from .asyn import iter_over_async, get_loop
+
+
+def iter_files(uri: str, client_config: Optional[dict]) -> Iterator[File]:
+    config = client_config or {}
+    client = Client.get_client(uri, **config)
+    _, path = client.parse_url(uri)
+    for file in iter_over_async(client.iter_files(path.rstrip("/")), get_loop()):
+        yield file
+    client.close()
+
+
+__all__ = ["iter_files", "File", "FilePointer"]

memory_foam/asyn.py

@@ -0,0 +1,36 @@
+import asyncio
+
+from fsspec.asyn import get_loop
+from typing import AsyncIterable, Awaitable, Iterator, TypeVar
+
+T = TypeVar("T")
+
+
+async def queue_task_result(coro: Awaitable[T], queue: asyncio.Queue, loop=get_loop()):
+    task = asyncio.ensure_future(coro, loop=loop)
+    result = await task
+    await queue.put(result)
+    return task
+
+
+def iter_over_async(
+    ait: AsyncIterable[T], loop: asyncio.AbstractEventLoop
+) -> Iterator[T]:
+    """Wrap an asynchronous iterator into a synchronous one"""
+
+    ait = ait.__aiter__()
+
+    # helper async fn that just gets the next element from the async iterator
+    async def get_next():
+        try:
+            obj = await ait.__anext__()
+            return False, obj
+        except StopAsyncIteration:
+            return True, None
+
+    # actual sync iterator
+    while True:
+        done, obj = asyncio.run_coroutine_threadsafe(get_next(), loop).result()
+        if done:
+            break
+        yield obj

memory_foam/client/__init__.py

@@ -0,0 +1,3 @@
+from .fsspec import Client
+
+__all__ = ["Client"]

memory_foam/client/fsspec.py

@@ -0,0 +1,137 @@
+from abc import ABC, abstractmethod
+import asyncio
+import multiprocessing
+import os
+from typing import Any, AsyncIterator, ClassVar, Optional
+from fsspec.spec import AbstractFileSystem
+from urllib.parse import urlparse
+
+from ..file import File
+from ..asyn import get_loop
+
+DELIMITER = "/"  # Path delimiter.
+FETCH_WORKERS = 100
+
+
+# need to move to a new file
+
+ResultQueue = asyncio.Queue[Optional[File]]
+
+
+class ClientError(RuntimeError):
+    def __init__(self, message, error_code=None):
+        super().__init__(message)
+        # error code from the cloud itself
+        self.error_code = error_code
+
+
+class Client(ABC):
+    MAX_THREADS = multiprocessing.cpu_count()
+    FS_CLASS: ClassVar[AbstractFileSystem]
+    PREFIX: ClassVar[str]
+    protocol: ClassVar[str]
+
+    def __init__(self, name: str, fs_kwargs: dict[str, Any]) -> None:
+        self.name = name
+        self.fs_kwargs = fs_kwargs
+        self._fs: Optional[AbstractFileSystem] = None
+        self.uri = self.get_uri(self.name)
+
+    @classmethod
+    def create_fs(cls, **kwargs) -> "AbstractFileSystem":
+        kwargs.setdefault("version_aware", True)
+        fs = cls.FS_CLASS(**kwargs)
+        fs.invalidate_cache()
+        return fs
+
+    @abstractmethod
+    def close(self) -> None: ...
+
+    @property
+    def fs(self) -> AbstractFileSystem:
+        if not self._fs:
+            self._fs = self.create_fs(**self.fs_kwargs)
+        return self._fs
+
+    @staticmethod
+    def get_implementation(url: str) -> type["Client"]:
+        # from .azure import AzureClient
+        # from .gcs import GCSClient
+        from .s3 import ClientS3
+
+        protocol = urlparse(url).scheme
+
+        if not protocol:
+            raise NotImplementedError(
+                "Unsupported protocol: urlparse was not able to identify a scheme"
+            )
+
+        protocol = protocol.lower()
+        if protocol == ClientS3.protocol:
+            return ClientS3
+        # if protocol == GCSClient.protocol:
+        #     return GCSClient
+        # if protocol == AzureClient.protocol:
+        #     return AzureClient
+
+        raise NotImplementedError(f"Unsupported protocol: {protocol}")
+
+    @staticmethod
+    def get_client(source: str, **kwargs) -> "Client":
+        cls = Client.get_implementation(source)
+        storage_url, _ = cls.split_url(source)
+        if os.name == "nt":
+            storage_url = storage_url.removeprefix("/")
+
+        return cls.from_name(storage_url, kwargs)
+
+    @classmethod
+    def from_name(
+        cls,
+        name: str,
+        kwargs: dict[str, Any],
+    ) -> "Client":
+        return cls(name, kwargs)
+
+    def parse_url(self, source: str) -> tuple[str, str]:
+        storage_name, rel_path = self.split_url(source)
+        return self.get_uri(storage_name), rel_path
+
+    def get_uri(self, name: str) -> str:
+        return f"{self.PREFIX}{name}"
+
+    @classmethod
+    def split_url(self, url: str) -> tuple[str, str]:
+        fill_path = url[len(self.PREFIX) :]
+        path_split = fill_path.split("/", 1)
+        bucket = path_split[0]
+        path = path_split[1] if len(path_split) > 1 else ""
+        return bucket, path
+
+    def get_full_path(self, rel_path: str, version_id: Optional[str] = None) -> str:
+        return self.version_path(f"{self.PREFIX}{self.name}/{rel_path}", version_id)
+
+    def version_path(cls, path: str, version_id: Optional[str]) -> str:
+        return path
+
+    async def iter_files(self, start_prefix: str) -> AsyncIterator[File]:
+        result_queue: ResultQueue = asyncio.Queue(200)
+        loop = get_loop()
+        main_task = loop.create_task(self._fetch(start_prefix, result_queue))
+
+        while (file := await result_queue.get()) is not None:
+            yield file
+
+        await main_task
+
+    @abstractmethod
+    async def _fetch(self, start_prefix: str, result_queue: ResultQueue) -> None: ...
+
+    @staticmethod
+    def _is_valid_key(key: str) -> bool:
+        """
+        Check if the key looks like a valid path.
+
+        Invalid keys are ignored when indexing.
+        """
+        return not (key.startswith("/") or key.endswith("/") or "//" in key)

memory_foam/client/s3.py

@@ -0,0 +1,143 @@
+import asyncio
+from typing import Any, Optional, cast
+from s3fs import S3FileSystem
+
+
+from ..asyn import queue_task_result, get_loop
+from ..file import File, FilePointer
+from .fsspec import DELIMITER, Client, ResultQueue
+
+from botocore.exceptions import NoCredentialsError
+
+
+class ClientS3(Client):
+    FS_CLASS = S3FileSystem
+    PREFIX = "s3://"
+    protocol = "s3"
+
+    @classmethod
+    def create_fs(cls, **kwargs) -> S3FileSystem:
+        if "aws_endpoint_url" in kwargs:
+            kwargs.setdefault("client_kwargs", {}).setdefault(
+                "endpoint_url", kwargs.pop("aws_endpoint_url")
+            )
+        if "aws_key" in kwargs:
+            kwargs.setdefault("key", kwargs.pop("aws_key"))
+        if "aws_secret" in kwargs:
+            kwargs.setdefault("secret", kwargs.pop("aws_secret"))
+        if "aws_token" in kwargs:
+            kwargs.setdefault("token", kwargs.pop("aws_token"))
+
+        # We want to use newer v4 signature version since regions added after
+        # 2014 are not going to support v2 which is the older one.
+        # All regions support v4.
+        kwargs.setdefault("config_kwargs", {}).setdefault("signature_version", "s3v4")
+
+        if "region_name" in kwargs:
+            kwargs["config_kwargs"].setdefault("region_name", kwargs.pop("region_name"))
+        if not kwargs.get("anon"):
+            try:
+                # Run an inexpensive check to see if credentials are available
+                super().create_fs(**kwargs).sign("s3://bucket/object")
+            except NoCredentialsError:
+                kwargs["anon"] = True
+            except NotImplementedError:
+                pass
+
+        return cast(S3FileSystem, super().create_fs(**kwargs, asynchronous=True))
+
+    def close(self):
+        self.fs.close_session(get_loop(), self.s3)
+
+    async def _fetch(self, start_prefix: str, result_queue: ResultQueue) -> None:
+        loop = get_loop()
+
+        async def get_pages(it, page_queue):
+            try:
+                async for page in it:
+                    await page_queue.put(page.get(contents_key, []))
+            finally:
+                await page_queue.put(None)
+
+        async def process_pages(page_queue, result_queue):
+            max_concurrent_reads = asyncio.Semaphore(32)
+
+            async def _read_file(pointer: FilePointer) -> File:
+                async with max_concurrent_reads:
+                    contents = await self._read(pointer.path, pointer.version)
+                    return (pointer, contents)
+
+            try:
+                found = False
+
+                while (res := await page_queue.get()) is not None:
+                    if res:
+                        found = True
+
+                    tasks = []
+                    for d in res:
+                        if not self._is_valid_key(d["Key"]):
+                            continue
+                        pointer = self._info_to_file_pointer(d)
+                        task = queue_task_result(
+                            _read_file(pointer), result_queue, loop
+                        )
+                        tasks.append(task)
+                    await asyncio.gather(*tasks)
+
+                if not found:
+                    raise FileNotFoundError(f"Unable to resolve remote path: {prefix}")
+            finally:
+                await result_queue.put(None)
+
+        try:
+            prefix = start_prefix
+            if prefix:
+                prefix = prefix.lstrip(DELIMITER) + DELIMITER
+            versions = True
+            fs = self.fs
+            await fs.set_session()
+            self.s3 = await fs.get_s3(self.name)
+            if versions:
+                method = "list_object_versions"
+                contents_key = "Versions"
+            else:
+                method = "list_objects_v2"
+                contents_key = "Contents"
+            pag = self.s3.get_paginator(method)
+            it = pag.paginate(
+                Bucket=self.name,
+                Prefix=prefix,
+                Delimiter="",
+            )
+            page_queue: ResultQueue = asyncio.Queue(2)
+            page_consumer = loop.create_task(process_pages(page_queue, result_queue))
+            try:
+                await get_pages(it, page_queue)
+                await page_consumer
+            finally:
+                page_consumer.cancel()  # In case get_pages() raised
+        finally:
+            result_queue.put_nowait(None)
+
+    async def _read(self, path, version) -> bytes:
+        stream = await self.fs.open_async(self.get_full_path(path, version))
+        return await stream.read()
+
+    def _info_to_file_pointer(
+        self,
+        v: dict[str, Any],
+    ) -> FilePointer:
+        version = self._clean_s3_version(v.get("VersionId", ""))
+        return FilePointer(
+            source=self.uri,
+            path=v["Key"],
+            size=v["Size"],
+            version=version,
+            last_modified=v.get("LastModified", ""),
+        )
+
+    def _clean_s3_version(self, ver: Optional[str]) -> str:
+        if ver is None or ver == "null":
+            return ""
+        return ver

memory_foam/file.py

@@ -0,0 +1,28 @@
+from dataclasses import asdict, dataclass
+from datetime import datetime
+
+
+@dataclass
+class FilePointer:
+    """
+
+    Attributes:
+        source (str): The source of the file (e.g., 's3://bucket-name/').
+        path (str): The path to the file (e.g., 'path/to/file.txt').
+        size (int): The size of the file in bytes. Defaults to 0.
+        version (str): The version of the file. Defaults to an empty string.
+        last_modified (datetime): The last modified timestamp of the file.
+            Defaults to Unix epoch (`1970-01-01T00:00:00`).
+    """
+
+    source: str
+    path: str
+    size: int
+    version: str
+    last_modified: datetime
+
+    def to_dict_with(self, d: dict):
+        return {**asdict(self), **d}
+
+
+File = tuple[FilePointer, bytes]

memory_foam-0.0.1.dist-info/LICENSE

@@ -0,0 +1,201 @@
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memory_foam-0.0.1.dist-info/METADATA

@@ -0,0 +1,70 @@
+Metadata-Version: 2.2
+Name: memory-foam
+Version: 0.0.1
+Summary: Read the contents of files from S3, GCS and Azure into memory
+Author-email: Matt Seddon <mattseddon@hotmail.com>
+License: Apache-2.0
+Project-URL: Documentation, https://github.com/mattseddon/memory-foam
+Project-URL: Issues, https://github.com/mattseddon/memory-foam/issues
+Project-URL: Source, https://github.com/mattseddon/memory-foam
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Development Status :: 2 - Pre-Alpha
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: fsspec>=2024.2.0
+Requires-Dist: s3fs>=2024.2.0
+Requires-Dist: gcsfs>=2024.2.0
+Requires-Dist: adlfs>=2024.2.0
+Provides-Extra: tests
+Requires-Dist: pytest<9,>=8; extra == "tests"
+Requires-Dist: pytest-sugar>=0.9.6; extra == "tests"
+Requires-Dist: pytest-cov>=4.1.0; extra == "tests"
+Requires-Dist: pytest-mock>=3.12.0; extra == "tests"
+Requires-Dist: pytest-servers[all]>=0.5.9; extra == "tests"
+Requires-Dist: hypothesis; extra == "tests"
+Provides-Extra: dev
+Requires-Dist: memory_foam[tests]; extra == "dev"
+Requires-Dist: mypy==1.15.0; extra == "dev"
+Provides-Extra: examples
+Requires-Dist: dlt; extra == "examples"
+Requires-Dist: pillow; extra == "examples"
+Requires-Dist: ultralytics; extra == "examples"
+Requires-Dist: tqdm; extra == "examples"
+
+# memory-foam
+
+`memory-foam` is a Python package that provides a set of iterators to load the contents of files from s3 cloud storage into memory for easy processing.
+
+## Features
+
+- **Unified Interface**: Seamlessly interact with files stored in S3.
+- **Asynchronous Support**: Efficiently load files using asynchronous iterators.
+- **Version Awareness**: Handle different versions of files with ease.
+
+## Installation
+
+You can install `memory-foam` using pip:
+
+```bash
+pip install memory-foam
+```
+
+## Example usage
+
+```python
+from io import BytesIO
+from memory_foam import iter_files
+
+...
+
+for pointer, contents in iter_files(uri, client_config):
+        results = process(contents)
+        data = pointer.to_dict_with(results)
+        save(data)
+```

memory_foam-0.0.1.dist-info/RECORD

@@ -0,0 +1,11 @@
+memory_foam/__init__.py,sha256=Jez51Vz7auM2yPCoPdNyCBte3HlgXRYePWMulInQk5M,508
+memory_foam/asyn.py,sha256=rK4NHZtQrBvqB7CDZLBGeJWow8WDjLz-KJM1ezGCmRY,958
+memory_foam/file.py,sha256=OIQfzGTW45W5ipHDTswsHFkU34y1HqvPopIxjNKCjLs,758
+memory_foam/client/__init__.py,sha256=1kDpCPoibMXi1gExR4lTLc5pi-k6M5TANiwtXkPoLhU,49
+memory_foam/client/fsspec.py,sha256=Y7uNtyLfgasfoLJwZgbCwqbWs8BHu6n6kmqTRwxJcR0,4101
+memory_foam/client/s3.py,sha256=jARW-Vl0rGMOIvhLgvEcMJmzSYWlbS9CAYfOg5FitWc,5065
+memory_foam-0.0.1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+memory_foam-0.0.1.dist-info/METADATA,sha256=vWnqnBbx3ycBboUGcQ-TlmaKhIFff0ZmXtTPy9ZTGxk,2353
+memory_foam-0.0.1.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
+memory_foam-0.0.1.dist-info/top_level.txt,sha256=IRXnv-MLhKDovxOG2qhklYTdeA3T0GqYVDgLQjsUA-I,12
+memory_foam-0.0.1.dist-info/RECORD,,

memory_foam-0.0.1.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: setuptools (76.0.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

memory_foam-0.0.1.dist-info/top_level.txt

@@ -0,0 +1 @@
+memory_foam