melage 0.0.69__py3-none-any.whl → 0.0.70__py3-none-any.whl

{melage-0.0.69.dist-info → melage-0.0.70.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: melage
-Version: 0.0.69
+Version: 0.0.70
 Summary: MELAGE: An open-source Python toolkit for neonatal and adult neuroimaging (MRI & 3D ultrasound).
 Author-email: Bahram Jafrasteh <jafrasteh.bahram@inibica.es>
 Project-URL: Homepage, https://github.com/BahramJafrasteh/MELAGE
@@ -68,7 +68,7 @@ td, th {
 </style>
 
 <p align="center">
-<img src="resource/main.ico" alt="MELAGE" style="border:1px solid black" object-fit="contain" width="400"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/main.ico" alt="MELAGE" style="border:1px solid black" object-fit="contain" width="400"/><br>
 <font size="4"> MELAGE</font> 
 </p>
 	
@@ -141,7 +141,7 @@ This is the main window that appears after running melage.
 * To continue, you need to create a new project or load previously saved project
 * The default format for the projects are ".bn"
 <p align="center">
-<img src="resource/manual_images/main_page.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/main_page.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 <font size="4"> main window</font> 
 </p>
 
@@ -161,7 +161,7 @@ These options are also available through:
  * File -> load project
  * File -> save
 <p align="center">
-<img src="resource/manual_images/open_save_load.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/open_save_load.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> from left to right: Create new project, load a project and save</font> 
 </p>
 <br>
@@ -176,8 +176,8 @@ From left to right
 
 
 <p float="left" align="center">
-<img src="resource/manual_images/load_image_file.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/>
-<img src="resource/manual_images/load_image_file_openp.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/load_image_file.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/load_image_file_openp.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Open image toolbar left: There is no project. Right: A project has been loaded</font> 
 </p>
 <br>
@@ -195,7 +195,7 @@ From left to right:
  * 3D: This option allows apearance or dispearance of 3D widgets.
 
 <p float="left" align="center">
-<img src="resource/manual_images/toolbar_tools.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/toolbar_tools.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/><br>
 <font size="4">Necessary tools toolbar</font> 
 </p>
 
@@ -207,7 +207,7 @@ From left to right:
  * Panning: Use to pan through a slice after or before zooming
 
 <p float="left" align="center">
-<img src="resource/manual_images/panning_toolbar.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/panning_toolbar.png" alt="MELAGE" width="200" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Panning toolbar</font> 
 </p>
 
@@ -226,7 +226,7 @@ In the right hand side of panning toolbar there is segmentation toolbar. From le
 
 
 <p float="left" align="center">
-<img src="resource/manual_images/segmentation_toolbar.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/segmentation_toolbar.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Segmentation toolbar</font> 
 </p>
 
@@ -238,7 +238,7 @@ From left to right:<br>
  * Exit: Exit button
 
 <p align="center">
-<img src="resource/manual_images/exit_toolbar.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/exit_toolbar.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Exit toolbar</font> 
 </p>
 
@@ -251,14 +251,14 @@ From left to right:<br>
 <td>
   
 <p align="center">
-<img src="resource/manual_images/widget_color.png" alt="MELAGE" width="750" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_color.png" alt="MELAGE" width="750" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Color </font> 
 </p>
   
 </td>
 <td>
 <p align="center">
-<img src="resource/manual_images/widget_color_additional.png" alt="MELAGE" width="1000" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_color_additional.png" alt="MELAGE" width="1000" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Right click</font> 
 </p>
 </td>
@@ -281,12 +281,12 @@ The name of the lables can be changed.
 A new label can be created by clicking on the color in the segmentation toolbar
 
 <p align="center">
-<img src="resource/manual_images/widget_color_add.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_color_add.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Add a color</font> 
 </p>
 A new color can be chosen here. Then, another windows will be opened as follows
 <p align="center">
-<img src="resource/manual_images/widget_color_add2.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_color_add2.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Add index and name</font> 
 </p>
 In this windows the index of new color and its name should be chosen. If the index of a new color already exist it replaces the index of previously existing color.
@@ -298,14 +298,14 @@ In this windows the index of new color and its name should be chosen. If the ind
 <tr>
 <td>
 <p align="center">
-<img src="resource/manual_images/widget_mri.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_mri.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Widget MRI</font> 
 </p>
   
 </td>
 <td>
 <p align="center">
-<img src="resource/manual_images/widget_mri2.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_mri2.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2"> Widget MRI (continued)</font> 
 </p>
 </td>
@@ -318,7 +318,7 @@ Image enhancement widget including brightness, contrast improvement, bandpass fi
 ## table widget
 
 <p align="center">
-<img src="resource/manual_images/widget_table.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_table.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Widget table</font> 
 </p>
 This table includes
@@ -334,7 +334,7 @@ This table includes
 
 
 <p align="center">
-<img src="resource/manual_images/widget_table2.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_table2.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Widget table</font> 
 </p>  
 Right click in the table widget can appear additional options:
@@ -350,7 +350,7 @@ Right click in the table widget can appear additional options:
 ## images widget
 
 <p align="center">
-<img src="resource/manual_images/widget_images.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_images.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Widget images</font> 
 </p>
 This includes a set of images (MRI, Ultrasound, etc.) and the corresponding segmentation that can be selected an loaded later if it is needed.
@@ -358,7 +358,7 @@ The image can be visulized if the icon is activated.
 A segmentation file can not be loaded before loading an image.
 
 <p align="center">
-<img src="resource/manual_images/widget_images2.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_images2.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Widget images</font> 
 </p>
 Right click on this part can give access to
@@ -370,7 +370,7 @@ Right click on this part can give access to
     * Clear All: Clear all non active images
 Importing dialouge will be appear as follows
 <p align="center">
-<img src="resource/manual_images/widget_images3.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_images3.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">Widget images</font> 
 </p>
 The type of image file or segmentation file can be selected from this window. For example if "Neonatal" is selected the image is an ultrasound and for MRI files "MRI" option should be selected.
@@ -379,7 +379,7 @@ There is a preview option that can be used to preview an image before openning.
 
 ## Segmentation intensity widget
 <p align="center">
-<img src="resource/manual_images/widget_segintensity.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_segintensity.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">segmentation intensity</font> 
 </p>
 This widget has been designed to intensify the intensity of the color in the segmented region. If the vaule is equal to zero, it does not show any segmentation.
@@ -388,7 +388,7 @@ This widget has been designed to intensify the intensity of the color in the seg
 
 ## Marker size widget
 <p align="center">
-<img src="resource/manual_images/widget_marker.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_marker.png" alt="MELAGE" width="300" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">segmentation intensity</font> 
 </p>
 This widget has two parts from top to bottom:
@@ -399,7 +399,7 @@ This widget has two parts from top to bottom:
 # Tabs
 There are three tabs designed for MELAGE.
 <p align="center">
-<img src="resource/manual_images/tabs.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tabs.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">segmentation intensity</font> 
 </p>
  * Mutual view
@@ -407,7 +407,7 @@ There are three tabs designed for MELAGE.
      * The number above each plane is the slice number.
      * There is a letter in left, right, top and bottom of each plane. "S" stands for sagittal, "A" axial and "C" stands for coronal. 
      <p align="center">
-<img src="resource/manual_images/widget_tab_mutualview.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_tab_mutualview.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 <font size="2">segmentation intensity</font> 
 </p>
      * One can segment each image and/or process images in this view.
@@ -415,7 +415,7 @@ There are three tabs designed for MELAGE.
      * The bottom images has been reserved for MRI images and named bottom image.
      * If one image is closed this tab just shows three planes of the first image as shown below.
      <p align="center">
-<img src="resource/manual_images/widget_tab_mutualview2.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/widget_tab_mutualview2.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 </p>
  * Ultrasound segmentation
      * This tabl has the following components:
@@ -425,7 +425,7 @@ There are three tabs designed for MELAGE.
         * show seg (radio button): To visualize or do not show segmented regions.
         * 3D visualization: 3D visualization is an important part of MELAGE that later will be explained in details.
      <p align="center"> 
-<img src="resource/manual_images/tab_us.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tab_us.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 </p>
  * MRI segmentation
      * This tabl has the following components:
@@ -435,38 +435,38 @@ There are three tabs designed for MELAGE.
         * show seg (radio button): To visualize or do not show segmented regions.
         * 3D visualization: 3D visualization is an important part of MELAGE that later will be explained in details.
      <p align="center"> 
-<img src="resource/manual_images/tab_mri.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tab_mri.png" alt="MELAGE" width="800" style="border:1px solid black" object-fit="contain"/><br>
 </p>
 
 # 3D Visualization
 Right click on this region give access to various options:
 
 <p align="center"> 
-<img src="resource/manual_images/3D_rightc.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/><br>
 </p>
 
    * GoTo : Activating it allows to go to the corresponding location in the image.
     * The approximate location of mouse in 3D space will apear on the right bottom part of the 3D visualization
         * The location of the selected point will appear in proper sagittal, coronal or axial plane according to the direction that is closest to this view.
     <p align="center"> 
-<img src="resource/manual_images/3D_rightc_goto.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_goto.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
 </p>
 
     * Segmentation: This option activate image segmentation visualization.
         * tip: If you are in this tab to activate it you need to go to another tab and get back to it if it is needed.
     <p align="center"> 
-<img src="resource/manual_images/3D_rightc_seg.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_seg.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
 </p>
 
     * BG color: Change background color. You can select different background color for your 3D visualization.
 
     * Painting: It has various options:
 <p align="center"> 
-<img src="resource/manual_images/3D_rightc_paint.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/><br>
 </p>
         * Draw: It enables to draw in order to cut a part of 3D image.
     <p align="center">
-    <img src="resource/manual_images/3D_rightc_paint_draw1.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/>
+    <img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_draw1.png" alt="MELAGE" width="700" style="border:1px solid black" object-fit="contain"/>
     </p>
 * Show total: To get back to orignal view without cut<br>
 * Image render:  To render image in different colors. The segmentation intensity can help in better visulization.
@@ -474,19 +474,19 @@ Right click on this region give access to various options:
 <tr>
 <td>
 <p align="center">
-<img src="resource/manual_images/3D_rightc_paint_render.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_render.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 <font size="2">Rainbow</font> 
 </p>
 </td>
 <td>
 <p align="center">
-<img src="resource/manual_images/3D_rightc_paint_render2.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_render2.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 <font size="2">Gray</font> 
 </p>
 </td>
 <td>
 <p align="center">
-<img src="resource/manual_images/3D_rightc_paint_render3.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_render3.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 <font size="2">Jet</font> 
 </p>
 </td>
@@ -494,19 +494,19 @@ Right click on this region give access to various options:
 <tr>
 <td>
 <p align="center">
-<img src="resource/manual_images/3D_rightc_paint_render4.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_render4.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 <font size="2">Gnuplot</font> 
 </p>
 </td>
 <td>
 <p align="center">
-<img src="resource/manual_images/3D_rightc_paint_render5.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_render5.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 <font size="2">Gnuplot2</font> 
 </p>
 </td>
 <td>
 <p align="center">
-<img src="resource/manual_images/3D_rightc_paint_render6.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/3D_rightc_paint_render6.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 <font size="2">Original</font> 
 </p>
 </td>
@@ -528,7 +528,7 @@ Right click on this region give access to various options:
     * Add to interpolation: Add the current slice for slice to slice interpolation
     * Apply interpolation by adding the current slice to the interpolation
 <p align="center">
-<img src="resource/manual_images/tools_seg.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_seg.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 </p>
 ## interpolation between slices
 
@@ -548,7 +548,7 @@ To use this option:
     * Remove: eliminating current ruler
     * sending the information to the table
 <p align="center"> 
-<img src="resource/manual_images/tools_ruler.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_ruler.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 </p>
 There are no limits for adding new ruler.
 
@@ -561,7 +561,7 @@ There are no limits for adding new ruler.
     * Basic Info: including Image Histogram, Resize, Image Information.
 
 <p align="center"> 
-<img src="resource/manual_images/tools_tools.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_tools.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 </p>
 
 * N4 Bias Field Correction
@@ -575,7 +575,7 @@ There are no limits for adding new ruler.
         * By clicking on apply the algorithm starts to work. As it is computational needs its time to finish. Do not worry if application is not working during this time.
         * After finishing the algoirhtm another button "Original" appears, which means you can get back to original image if you are not happy with the results.
 <p align="center"> 
-<img src="resource/manual_images/tools_n4b.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_n4b.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 * Image Masking:
@@ -587,7 +587,7 @@ There are no limits for adding new ruler.
         * Bottom right: To apply the masking on image
     * To get back to original image, the masking color should be "9876_Combined".
 <p align="center"> 
-<img src="resource/manual_images/tools_masking.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_masking.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 * Brain Extraction Tool
@@ -606,7 +606,7 @@ Hum Brain Mapp.2002 Nov;17(3):143-55. doi: 10.1002/hbm.10062. PMID: 12391568; PM
         * Search distance (see paper)
         * Radius of curvature (see paper)
 <p align="center"> 
-<img src="resource/manual_images/tools_bet.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_bet.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 * Deep Learning Brain Extraction
@@ -622,7 +622,7 @@ Hum Brain Mapp.2002 Nov;17(3):143-55. doi: 10.1002/hbm.10062. PMID: 12391568; PM
         * Apply: To run the model
         * Tips: If you run the model and you are not satisfied with the results, you can change the threshold without needing to run the model again.
 <p align="center"> 
-<img src="resource/manual_images/tools_deepbet.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_deepbet.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
 </p>
 
 * Image Thresholding
@@ -632,7 +632,7 @@ Hum Brain Mapp.2002 Nov;17(3):143-55. doi: 10.1002/hbm.10062. PMID: 12391568; PM
         * Number of classes : Number of classes for image thresholding
         * Apply: To execute the algorithm
 <p align="center"> 
-<img src="resource/manual_images/tools_threshold.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_threshold.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
 </p>
 
 * Masking Operations
@@ -644,7 +644,7 @@ Hum Brain Mapp.2002 Nov;17(3):143-55. doi: 10.1002/hbm.10062. PMID: 12391568; PM
             * Image selection: select MRI or Ultrasound
             * Apply: Execut masking
  <p align="center"> 
-<img src="resource/manual_images/tools_maskO.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_maskO.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 * Change CS
@@ -655,26 +655,26 @@ Hum Brain Mapp.2002 Nov;17(3):143-55. doi: 10.1002/hbm.10062. PMID: 12391568; PM
         * To: choose the desired coordinate system from the combo box
         * Apply: run the algorithm to see the results
  <p align="center"> 
-<img src="resource/manual_images/tools_cs.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_cs.png" alt="MELAGE" width="600" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 * Basic info
  <p align="center"> 
-<img src="resource/manual_images/tools_basic.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_basic.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
     * It includes 
         * image histogram: To show image histogram
         * Resize: Isotropic resizing imgage to a desire spacing <p align="center"> 
-<img src="resource/manual_images/tools_resize.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_resize.png" alt="MELAGE" width="400" style="border:1px solid black" object-fit="contain"/>
 </p> 
         * Images info. : information extracted from a loaded image. In the bottom there is a search option. <p align="center"> 
-<img src="resource/manual_images/tools_imageinfo.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/tools_imageinfo.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 ## File Menu
 <p align="center"> 
-<img src="resource/manual_images/menu_file.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/menu_file.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
 </p> 
 
 * It includes:
@@ -683,18 +683,18 @@ Hum Brain Mapp.2002 Nov;17(3):143-55. doi: 10.1002/hbm.10062. PMID: 12391568; PM
     * Save: To save the current project
     * Save as: To save the current project into another file
     * Import: Import a segmentation file <p align="center"> 
-<img src="resource/manual_images/menu_file_import.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/menu_file_import.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
 </p> 
     * Export: Export modified image or modified segmentation as a new file. It automatically adds a suffix to the end of the current file. <p align="center"> 
-<img src="resource/manual_images/menu_file_export.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/menu_file_export.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
 </p> 
     * Screen shot: Take a screen shot form one of the plane or whole of the scene. <p align="center"> 
-<img src="resource/manual_images/menu_file_ss.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/menu_file_ss.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
 </p> 
     * Close US project: Closing an ultrasound image or the image appears on the top.
     * Close MRI project: Closing a MRI image or the image appears on the bottom
     * Setting: To change defaults setting of the application. align="center"> 
-<img src="resource/manual_images/menu_file_settings.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
+<img src="https://raw.githubusercontent.com/BahramJafrasteh/MELAGE/main/resource/manual_images/menu_file_settings.png" alt="MELAGE" width="500" style="border:1px solid black" object-fit="contain"/>
 </p> 
     * Exit: To exit the application. On pressing this button another window appears to ask you if you want to save the project or not.