megadetector 5.0.6__py3-none-any.whl → 5.0.8__py3-none-any.whl

{megadetector-5.0.6.dist-info → megadetector-5.0.8.dist-info}/RECORD

@@ -8,29 +8,31 @@ api/batch_processing/api_core/server_utils.py,sha256=oFusP1E29op5DN1nEaR-jQZgREx
 api/batch_processing/api_core/batch_service/score.py,sha256=ZuPQV7O1u9QNPhWVSYxQqvYgXo9p15e-XhnUyuz0vLE,17347
 api/batch_processing/api_core_support/aggregate_results_manually.py,sha256=8yDXbw12G8Y6SOv09tY-0hPXMNG_iRPv6mzxBiccsaU,2275
 api/batch_processing/api_support/summarize_daily_activity.py,sha256=SmRGAMWTKXf9bDXUPsTySMiIg8K1LDkAC8KVBVH_mPg,5383
-api/batch_processing/data_preparation/manage_local_batch.py,sha256=nNpQWPkdYP5Z122fg8otvr7bHJFkVIoQANh6f09yTlw,85371
-api/batch_processing/data_preparation/manage_video_batch.py,sha256=ISpM0bO5RJ_byWhuJqddGZuaE_rxntidhxJz6teFH5E,9592
+api/batch_processing/data_preparation/manage_local_batch.py,sha256=z1smCyfw1Pet1AuXALPhGhpt53ClM4qW1OypMre31ac,89186
+api/batch_processing/data_preparation/manage_video_batch.py,sha256=fobPIMmfvdqa1OzxsurEYCFVnUTHGrtrGBiCq3xnYHs,9668
 api/batch_processing/integration/digiKam/setup.py,sha256=7P1X3JYrBDXmLUeLRrzxNfDkL5lo-pY8nXsp9Cz8rOI,203
 api/batch_processing/integration/digiKam/xmp_integration.py,sha256=AbGPTe9RjjOkKdiZDSElai61QyfeiLQQqJR2fiJpymA,17775
 api/batch_processing/integration/eMammal/test_scripts/config_template.py,sha256=UnvrgaFRBu59MuVUJa2WpG8ebcOJWcNeZEx6GWuYLzc,73
 api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py,sha256=eIzEKiwzCfifCOCGf-jf8G4dMuzyxQMWlrFzt-Z-nVk,3608
 api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py,sha256=OYMu97p8vprSv03QcnS6aSxPBocn9sgaozfUqq_JpyM,1369
-api/batch_processing/postprocessing/add_max_conf.py,sha256=pqD-I-e0vqtf49Jm-SNhh9u7jhnVlyi4Lf5prNksldU,1529
+api/batch_processing/postprocessing/add_max_conf.py,sha256=y4Xr_OHRxcop3vsLWQJ56eYIemm2HHKqVfvKJonTcQA,1530
 api/batch_processing/postprocessing/categorize_detections_by_size.py,sha256=b_O2OM44zIXewR4RjzeS2ue-32k5jE6KgjiPn8JRxAA,4877
-api/batch_processing/postprocessing/combine_api_outputs.py,sha256=WsOV4EsK9JUCMka1_-u-vinmWc6Ko8B0PD5fmwoXHh0,8233
-api/batch_processing/postprocessing/compare_batch_results.py,sha256=puzEA02yrCjtfjdhur0RSnqyIjG09hvxJQdEMS-srgU,32705
-api/batch_processing/postprocessing/convert_output_format.py,sha256=aLboVVZdlGUNYOZhme0w8LtYrd04i15oK0apOgZaYWk,12947
-api/batch_processing/postprocessing/load_api_results.py,sha256=VcqVjNzDjLFQCCn-gtFEHR19rulm7stLiXsWcz_XlUg,7416
+api/batch_processing/postprocessing/combine_api_outputs.py,sha256=7NR_QbozC6xLTwXpUrw7c1WIL2guAHiHIg4hj1XTbeU,8237
+api/batch_processing/postprocessing/compare_batch_results.py,sha256=8oJGwQ3ykNSBjrQNleuEhl2j_z74YynwnW19r0dmBG0,34652
+api/batch_processing/postprocessing/convert_output_format.py,sha256=b4hEQOaXSyH6GZQfHr_PLSM85r5aPrriwUOdgH1RkOo,13600
+api/batch_processing/postprocessing/load_api_results.py,sha256=aqmsWpqzDIcmompRwzF4oFkV7QPAazFyIGwEWRVd8Ng,6895
 api/batch_processing/postprocessing/md_to_coco.py,sha256=dRAkCGWtcNy_vsSTkX1h_0DZAsW6zNO7F-8XSkR8wAo,10139
-api/batch_processing/postprocessing/md_to_labelme.py,sha256=abtUHJA0WMt3QMpEvFVrYaKsAJhkaSetl51RwP_DMyI,7026
-api/batch_processing/postprocessing/merge_detections.py,sha256=B4QnqW9nvcEJpXzAK20TVB0t6L8c7PR5OjPy8FX-5Z8,15930
-api/batch_processing/postprocessing/postprocess_batch_results.py,sha256=WqMSWQUpJLt48IytGKLpAcfm9NX92zokL7CIdMsHAtM,68706
+api/batch_processing/postprocessing/md_to_labelme.py,sha256=0evnkCFC7TucHgFJ1i12rp_C1pEflxFD44Jp98AbGrw,9779
+api/batch_processing/postprocessing/merge_detections.py,sha256=O9fjLTZz7PJN19L19BYHVMGr20-gB9M3sIaBFY1_w_8,17192
+api/batch_processing/postprocessing/postprocess_batch_results.py,sha256=4lDpYqpA_wcwMWVP5xKpQH6_JfkBFV8N93j_CjkvPh8,74165
+api/batch_processing/postprocessing/remap_detection_categories.py,sha256=hcX2-Thk59X0df6H6x1rH1v15IwJrm3NQJK94yOt95w,6042
+api/batch_processing/postprocessing/render_detection_confusion_matrix.py,sha256=kIFBgu_JDagm8FhEd3GislSMoBHAz2Fq4ySeYHPKTd0,25047
 api/batch_processing/postprocessing/separate_detections_into_folders.py,sha256=l5NKxDDxROc2EXt8EslrswXAZkQXgWTy5FSqCqa09Ug,28720
-api/batch_processing/postprocessing/subset_json_detector_output.py,sha256=Q4V7RWSjrBCt7VEsakx0c_haHlRdrLSzy0uqD5ELjp4,20809
-api/batch_processing/postprocessing/top_folders_to_bottom.py,sha256=crm_UX8jE6JurUHmS2yI-awYn3_MXqvo2xOlFZ_qig8,5475
-api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=-XQ5IKY33y4CR1ELj-DOFbvtH51d-CtB6Dc-wiDOXoE,6899
-api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=Q0dRNGRO6l83pTbqkfiF0qOFsy2wfbpher3fd23Y_TU,2184
-api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=USbK5LKNXu6MTbfznK2su3nV085ivC39-a9AhEKVOWc,54850
+api/batch_processing/postprocessing/subset_json_detector_output.py,sha256=EROwcj4K-abAwzyZjPCQocuayIVma85lV-D6WvvRMuc,26368
+api/batch_processing/postprocessing/top_folders_to_bottom.py,sha256=etJK9DmHppMe3WqGXypuilW-n-7hOjOO9w_k1khlaVU,5476
+api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=fYqPZhaL-6cbpKHz96O3Ch65Y8xux2LQ2-ZlMGhOlM0,9053
+api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=YdMvM814TX0ZRTnP7BfowE62PoMoCOYcJOFl69DlKhQ,2189
+api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=79F6sLwGWOSBNZ5GbZMeuZEH3kfRsjYUTl4ouLhwnA8,62880
 api/synchronous/api_core/animal_detection_api/api_backend.py,sha256=PJXV0RFb6FoPBmdRug5W_5nbFwY2C_8CvDpFHjDs9w4,4934
 api/synchronous/api_core/animal_detection_api/api_frontend.py,sha256=_FGLf5C2tXQABFEGaA2Kzq05hj_D60BaIfWLCI-Os_4,10690
 api/synchronous/api_core/animal_detection_api/config.py,sha256=yEf7JZwRJCtHEV80kYvnNnUFJNds_AYLhomffwfFQi0,1017
@@ -70,7 +72,7 @@ classification/json_to_azcopy_list.py,sha256=o57wLHJPDrP9OPSY-3x81WI3mmcH1DyIOUh
 classification/json_validator.py,sha256=ZizcEPpW1J26p-oGyfvcffBy2voNRKCNXKF8NtxIt5A,26618
 classification/map_classification_categories.py,sha256=2B4K-TdE77VNw8XG1h8X7CuUvw0JSIrALdy6a1FvkXw,10738
 classification/merge_classification_detection_output.py,sha256=2FDTauvkbMZ3putJH837Ux67HTGsCAnGCOXhnnqjt6g,20123
-classification/prepare_classification_script.py,sha256=6BRxiEPSIl3nTVrZHE5qqUGDe_AxAEqnUg7sxMZSFMg,6141
+classification/prepare_classification_script.py,sha256=7xwqws57Fkn0rmH5sADlem9trOJkiriSRwPredeIXho,5952
 classification/prepare_classification_script_mc.py,sha256=IMCsLyGL70cViVTH0eow0sYDM9E81AsBGrctNveXP10,7440
 classification/run_classifier.py,sha256=eBpkZzP7TtrnwOIlc99fTpe1QocmDuERaIw9mXqwAWI,9363
 classification/save_mislabeled.py,sha256=WmOKNXgrvvIkUdehiiWHNiKc5M7q0UM2If0vea0_7K8,3466
@@ -81,30 +83,33 @@ classification/efficientnet/__init__.py,sha256=e-jfknjzCc5a0CSW-TaZ2vi0SPU1OMIsa
 classification/efficientnet/model.py,sha256=qJHWV9-rYKa4E_TIee5N_OjRhqDdM-icPpoMap3Q5HM,17040
 classification/efficientnet/utils.py,sha256=TF5S2cn2lvlCO2dFhdFPdzjbBBs-SyZGZmEx_dsJMbo,24846
 data_management/cct_json_to_filename_json.py,sha256=AxYeOzZHkHF1UxHCUBtofXNKVdUK-5xTfZp3_iE7hFc,2416
-data_management/cct_json_utils.py,sha256=JX5pJh5QLyKDhcXheUYgbRSd99uB9Ui-EfsRZ_Fhw_I,12570
+data_management/cct_json_utils.py,sha256=tZD2SftV4Vw9dlZQRnOumVoOYIsIkWU_iOAiim8fRMs,12767
 data_management/cct_to_csv.py,sha256=urIL8IUByhKZ4FLLa9TKlzT6mu8upLzAPN1WNnDZdIY,3859
 data_management/cct_to_md.py,sha256=0QtqUdUkrema2BSNTeJqHYkDuwOLc7tOQwq1KxTbtPE,4485
 data_management/cct_to_wi.py,sha256=nJKUhLXcZXKE5tAR9UxbqCjeikfaABfB746wpv-1BmI,8336
-data_management/coco_to_yolo.py,sha256=mfjv7ELP8AgrdRRbql_7YRaIQPRtfLWppJXsRnX2aSo,25050
-data_management/generate_crops_from_cct.py,sha256=6N4pj51gOVTXOi8REfrR5-X56NlBI_p-MHZd4hxBT_Q,4282
-data_management/get_image_sizes.py,sha256=yUCI5zQmA9G_GDaQiApwoafmO37cUi97dw-Ekh5leOE,4220
-data_management/labelme_to_coco.py,sha256=E9EdXsHkEBZ6KLZzYNGA3tQMJdwDpzJzJtF5kZvRKWA,12923
-data_management/labelme_to_yolo.py,sha256=H0bLty1yLm4Cz7cGuecwxUIaRk72PVokNLZTYB8hkCI,8479
+data_management/coco_to_labelme.py,sha256=YmztZdYHGenPj6lRe-jB1R5J4jG0kX7Ni9SIAGZTK7s,8077
+data_management/coco_to_yolo.py,sha256=IgW51lxyr_j9Y4ZlzIsW8NsgtWgvIkDeNKICVeYDx3s,26042
+data_management/generate_crops_from_cct.py,sha256=m6HJ8bB4N50HYV4SXAUV43k1XJl71QZmmWZ4L-9T45Y,4283
+data_management/get_image_sizes.py,sha256=34o5LTwanc0XfC7XqKnBJiX8mPiEq_JiiqqVMHglQqI,4961
+data_management/labelme_to_coco.py,sha256=yoGr7o-qwogTbvLLJQ6NjCmaYqY6-kHyn2C2860phkQ,18344
+data_management/labelme_to_yolo.py,sha256=7oHS-wV9jXqq1c03agsKnc9-YWSN_BeDjJ4pbX_lDW0,10041
 data_management/ocr_tools.py,sha256=8cVJMQvzvv_6HXV8zMR4nJH72-L_f3Dy9IjIb3E32Js,29920
-data_management/read_exif.py,sha256=HGCp5gvD8MHQ0xGGTX2_PD5JHFTdMtqjZ8ql2pt5Fn0,19036
+data_management/read_exif.py,sha256=9zdMkn4L_Do-4R4yenZw9ffFgb1TEBZuXhiCewVnP1A,21446
+data_management/remap_coco_categories.py,sha256=pQSJKHxYY2p3HwDB1JXLchvNIyPDbg7TXBLZdBzAw_g,3002
 data_management/remove_exif.py,sha256=_WDrKfRwK0UWCkj4SiLutGCd7-WRaKYoTgLfBWPDhGU,1555
-data_management/resize_coco_dataset.py,sha256=whm-XN7btC914duBZBJDfphVujosJKzJdH1XHM5XPDU,7414
-data_management/yolo_output_to_md_output.py,sha256=PznmANlgfMNzou7OI1JH0e76j5pS9VcYMxuXau-Ys30,14974
-data_management/yolo_to_coco.py,sha256=ybNqFlfasMfxzPx9u3A-GH1TCbMlnO5s2gX2CmyzXoA,7448
+data_management/resize_coco_dataset.py,sha256=3PSrV5T0FzUiHnZFdX7F9jKXLEqZSsNJN0jk-Yf9qh0,6100
+data_management/wi_download_csv_to_coco.py,sha256=cQs7b3j-6QcSTcVKocUK0Nl0sV9jepy3Bqi9wM1dzok,7704
+data_management/yolo_output_to_md_output.py,sha256=vxUdn4bqg0S67ozvxtnlX77X6S7nCvyZbKAyvCh_Suc,16313
+data_management/yolo_to_coco.py,sha256=E0Z0O6O2vyNDks9cC2INJjezstwujjdkz4QZ3PuPMf8,15196
 data_management/annotations/annotation_constants.py,sha256=P2CZCbAE0ImLLfaNRb1SMlP3q1fULWAIjgrYOrF9L0g,1566
 data_management/databases/add_width_and_height_to_db.py,sha256=71mOEK3xo9gbxK1TVZzBA9nNi-1ElmBZbIPKrUm9XG0,619
 data_management/databases/combine_coco_camera_traps_files.py,sha256=cwu_REQXdHWfVLtCvTvFEIvM7z8GwHVoawVuHcWv2aw,6888
-data_management/databases/integrity_check_json_db.py,sha256=x9BO7fDXCfdyHc-oiwVoeesIp_M9Q2bUOdh9DsohTbc,14377
+data_management/databases/integrity_check_json_db.py,sha256=mZxwc42uL_e4VqmuzRwh0lxvDN7WrwtKsDVPObp9hWc,14887
 data_management/databases/remove_corrupted_images_from_db.py,sha256=Dod8UQDFveAUJlrH9Svcp_HezdILRHp74TbAl3YGf84,6138
-data_management/databases/subset_json_db.py,sha256=UeVn3jlcpEw-K9E-QyRwxdzl7zaV80iv_u4v6kHUd_E,2749
+data_management/databases/subset_json_db.py,sha256=7oHGuiyoPyv8JBh5IrgP4Qez8xs86z94UAPss2_FlfQ,2749
 data_management/importers/add_nacti_sizes.py,sha256=qsBHPyJ7MPzl0vgJX5iErZxWkTJ6QRcyLJ8GM2YBu2U,1172
 data_management/importers/add_timestamps_to_icct.py,sha256=8XhQAIt_qw63qTMPobCKGl4O9RQZvZmhbmiSetOyNvA,2459
-data_management/importers/animl_results_to_md_results.py,sha256=muhwUQxMSoMSeNKEYNJu2E2d4h0tv_RrKoSgUWX1hiQ,4896
+data_management/importers/animl_results_to_md_results.py,sha256=Q43z0TQ5JTRVNbbCrb4E6lZB0kvWbngZMPrRmr43rp0,4884
 data_management/importers/auckland_doc_test_to_json.py,sha256=9Fg-n_Kj2jK5iZVaPrioNkhlLNxGnrU5GS_44lsadKo,12910
 data_management/importers/auckland_doc_to_json.py,sha256=qSjBcR7FTd5_J2LO6WOoIFxSnE2IiIIqRkhbydULV7s,5952
 data_management/importers/awc_to_json.py,sha256=jLXmwGaq81wgH7HcpbAJoNMQP2CqkdfI1mvShdTGeqw,5307
@@ -123,7 +128,7 @@ data_management/importers/jb_csv_to_json.py,sha256=u3IZwDboObYlxtUSa35G8P3t_L48m
 data_management/importers/mcgill_to_json.py,sha256=ZxsNW9qFi6Kyu8SJ0BB5uK7AMuBW92QOOKXHPbIgPwY,6718
 data_management/importers/missouri_to_json.py,sha256=y9lbLaD8bGM4m9iqGHIicyZOByeJGfZOF51RikHMSFU,14840
 data_management/importers/nacti_fieldname_adjustments.py,sha256=57PyfOft2Ws-1AcG4_9mzOcB3uW4IFxaZ3z0LsItUUU,2045
-data_management/importers/noaa_seals_2019.py,sha256=WHXqDmOetJYcrBkyNww4ZFQbh4VpCjQ7V4U3RpbBt94,5144
+data_management/importers/noaa_seals_2019.py,sha256=2_XJl-jxSiN1IOzGmRvsUR-bI4Pclo_jO4qSW2ytqks,5147
 data_management/importers/pc_to_json.py,sha256=9Nin7R47aaE5bjXjvq7A2trv2vFdJVYzhLHwLFji5Tg,10718
 data_management/importers/plot_wni_giraffes.py,sha256=V_kAzbYjtXEBUCdSwSGsEEemLN9aVyZuKhoSZQEvkCI,3787
 data_management/importers/prepare-noaa-fish-data-for-lila.py,sha256=WIkuR4ozEeHwzQPs54jIDIbAgKf1I4taZNgpHHzh-Rc,12774
@@ -140,7 +145,7 @@ data_management/importers/ubc_to_json.py,sha256=MP_whIR-CVhNPCE3vQF_tk-6_EpmxWwR
 data_management/importers/umn_to_json.py,sha256=emUVCtNfbJmgHS22fBL8GaAMiblaJen52-IuqiFiWyI,16177
 data_management/importers/wellington_to_json.py,sha256=QFcVfAxflUVHTMuGhXGxe3z3iMKJ0B8Nziwpx6XcoLE,7671
 data_management/importers/wi_to_json.py,sha256=xuHFXE6tuaUnZmiFik18_3UCSCQx9abaG_2TnaRn0Xg,13656
-data_management/importers/zamba_results_to_md_results.py,sha256=acU63-F4NVPNj7h0WW53mfUrvSWf9dn14-WzZxrog94,5591
+data_management/importers/zamba_results_to_md_results.py,sha256=UV0Iczxf_ghR3yL8D8KUAEg1j81_BavdzWhAFtg6wHQ,5594
 data_management/importers/eMammal/copy_and_unzip_emammal.py,sha256=gVB0drYUeCghWXFDpaJkCL0qdmFjMW75YAEEhFe38js,6080
 data_management/importers/eMammal/eMammal_helpers.py,sha256=Sv6PBAMDdlgwiek6Q3R6Rjio2RjtA-JpfgBr_Fmr9kA,6838
 data_management/importers/eMammal/make_eMammal_json.py,sha256=6C_-6Qk-Xhz_87DEPHA-txw90AvXrybJy1PbQXQbqwo,6987
@@ -148,51 +153,53 @@ data_management/importers/snapshotserengeti/make_full_SS_json.py,sha256=khE3W0pO
 data_management/importers/snapshotserengeti/make_per_season_SS_json.py,sha256=sAwvcR2siwblgY3LfTsbH4mXOXvJZCA246QIsQWuQBA,4316
 data_management/lila/add_locations_to_island_camera_traps.py,sha256=nsIJXyw2IhOwwM9A0SCn108Fg297fRUdADXGUAN8Y34,2561
 data_management/lila/add_locations_to_nacti.py,sha256=KVMWwSJx-gYI_J6J8y-AqsWnOTgidtebotJjYPfsj00,5017
-data_management/lila/create_lila_test_set.py,sha256=oYgOsUJjjbpfCs2Gx1CM6l2UK4xXmJPgRlwW4DOs1yY,4791
-data_management/lila/create_links_to_md_results_files.py,sha256=19YyXy4smcbjGbLYJOx0usbu5Rq2GQ1iDG4tLgOj1UM,3916
-data_management/lila/download_lila_subset.py,sha256=b25Pnql93Gtn-ZZmxQ0y30LiJMqxv9rB14z6Hn5T1TA,4382
-data_management/lila/generate_lila_per_image_labels.py,sha256=2dIQaVYTnyb5X_zfqQj1DpSqUh8XU0I8SgZkBAHQJiA,16856
-data_management/lila/get_lila_annotation_counts.py,sha256=m_tiXkpz3_KxVH4adDay_anUQ4OSdCkmOg7cUSP0tbI,5326
+data_management/lila/create_lila_blank_set.py,sha256=09b2tvMPG9jThyJoLQ3tHiaoQJ_kBEJ4Yn2dACh_McY,19764
+data_management/lila/create_lila_test_set.py,sha256=WxM-LuhtNiee3CLeVPxUEWsfbybgZd7oluZu6epl69A,4825
+data_management/lila/create_links_to_md_results_files.py,sha256=f0pXY2Lyj9DtRlgFpmLqNBs2qWd--B8N6UAt8E26tcM,3916
+data_management/lila/download_lila_subset.py,sha256=yDTv_TApQWCi3XzGe8-i4VLku2-gSayd4vRUP-W2kMI,7531
+data_management/lila/generate_lila_per_image_labels.py,sha256=pZ6WJJmIRvFrypbjE4LP2-jdwGhEiBYdA2FlL7HK5eA,17352
+data_management/lila/get_lila_annotation_counts.py,sha256=QVSKCmeLzliFZimjzi8AClS0Gz94pDMYckjw2cOm-7E,5490
 data_management/lila/get_lila_image_counts.py,sha256=r5p2wPL5vuKKO8DWia3Tll-EZZWFNUvax6ljaYtrKsk,3625
-data_management/lila/lila_common.py,sha256=olg_eR6Ul2kUQ7tIsndzVIJpils5oXNANYSGBmS455E,8667
-detection/process_video.py,sha256=tV7MTaS5mlSaWhAdDP4tvaMN_VCG27s-qr9yzf9Cwow,25915
-detection/pytorch_detector.py,sha256=K2mk-zlO81naypKzqdYYxlzX9xcaletDuq0MnNCCc10,11993
-detection/run_detector.py,sha256=TwkR0BSNeUvUmg5y-DJ6TtTnIq8Lv547JL4a9aiWpwI,24225
-detection/run_detector_batch.py,sha256=-8URucPBn0DVTZ7_U1bYA8fUYmiehTHWVb_ObZ7YVTo,43443
-detection/run_inference_with_yolov5_val.py,sha256=N77PkRM4dyOQCVik_BxPqNtIqbYb7jHphByGtB4XOf0,28323
-detection/run_tiled_inference.py,sha256=cs1IehE2DXj8Nr3CbnYMXqwcFM1vUBT1Rm5We5nlcSM,28785
-detection/tf_detector.py,sha256=xOO8kzd-Um2X_sAZyop524LM53nipv5pNx8YueGTJrc,6760
-detection/video_utils.py,sha256=w3Ym9YxHCb-sFHTZyapKT0FaxTH-coILOJLpnguTEN0,19390
+data_management/lila/lila_common.py,sha256=lR_kW6qz5bqOFiu_Io5Ax4CLbyOH4Rikev6cJXQHob8,7691
+data_management/lila/test_lila_metadata_urls.py,sha256=jDInoM5WD_EoahR_b5yTjrj6pkiitvj_Kz_1U0uSDzE,3966
+detection/process_video.py,sha256=wuMoV-DJde_QlTiNAxsRjlDttiLl2e2BiJuyTQBINIE,26825
+detection/pytorch_detector.py,sha256=WG6Q4KueBoA8lCZCdR2PrgbQAHs3HCO6MF01Ful4tfc,11992
+detection/run_detector.py,sha256=XmQ4s-B7IlkxJye56y6uvx2vx6Ml3IBTo3Wx0SalO1Q,26036
+detection/run_detector_batch.py,sha256=NC_tqgnshlmPijyM61WE1kyfA6SLfNNPQfAYqjhlxz0,47426
+detection/run_inference_with_yolov5_val.py,sha256=ny1aM94U-sjgJWb-cY1y9HG8r7Qx-RJsi9zCWYH_z1w,33975
+detection/run_tiled_inference.py,sha256=SMK6aaeOYZu5Yr3wezW3Pf0Q2TXyf6tHC-19p7854Rc,33931
+detection/tf_detector.py,sha256=p3P5ippLo79jdneXilqEuywUbOjUN79VqksL7ayPWy4,6769
+detection/video_utils.py,sha256=Rp5H7yl2vPgYKctztPGJFNSsrI3m021oh_uuT8SBmvI,19501
 detection/detector_training/copy_checkpoints.py,sha256=t2c3Q4Pf82tAp_OjSG-veIjRPrX0tJYi-bSQmGL2m4c,1091
 detection/detector_training/model_main_tf2.py,sha256=YwNsZ7hkIFaEuwKU0rHG_VyqiR_0E01BbdlD0Yx4Smo,4936
 md_utils/azure_utils.py,sha256=SVoQNSknYlBcpZeGrH2v3Qgm5kXxBrqM5Sx2L_Lax-I,6243
-md_utils/ct_utils.py,sha256=ywcKF1Rg8E_9XduxmVOSzcW_fgLFnDjI5IILjoZWiuY,10402
+md_utils/ct_utils.py,sha256=NkxEH5S2qCBcQlqVMgdY07jYU6sOUXPbjDv0GWapca0,13311
 md_utils/directory_listing.py,sha256=dgxMczSOEH352YXdWRuNo_ujsonRrPJXFeuS7ocpe9k,9615
-md_utils/md_tests.py,sha256=DL8xhTm_np3B_2I8wdneh6f9PhprVdViZsckrrhKLLI,21688
-md_utils/path_utils.py,sha256=ZK2YScgWgogx-oj9WJxHR5xUhDawcClYyWHZvqyI3WY,13202
-md_utils/process_utils.py,sha256=ullaq8AIZNbUjG9ftB1kK3q8zJmfgbZdUNo1v3oXmvA,3191
+md_utils/md_tests.py,sha256=7NQ_c-a4LfDceeHKU3gVr7e94fh7R1pZMLev-925fx8,33520
+md_utils/path_utils.py,sha256=Hsk-Rtx3Y_LRR4rAPNtAP9GBgfWmRkt7tVkLnOhgAFg,23176
+md_utils/process_utils.py,sha256=YkD38KLgceuqvMvDXIcVyzY51npUuUT3tOAjjF5Mvf8,4316
 md_utils/sas_blob_utils.py,sha256=GpjHn33N2b-XeBAtU3xhGbTIYcBs4YrXHtbQDmlGFvY,16955
-md_utils/string_utils.py,sha256=tFTC9TarPFGa7_UkKF0_t6Q2naH9IEsDVM2DOxwkFTQ,1277
-md_utils/url_utils.py,sha256=aFN7_WvzMJqYHL9t-SGCP2A0-mlYu1-P0HkZwgzUsKg,4598
-md_utils/write_html_image_list.py,sha256=9s9Y20MdDIWoLugyyNUAQNsM8-m46mN46EiIUSpOeu8,6986
+md_utils/split_locations_into_train_val.py,sha256=psiWoXkYYLLOfjVHUyOhaa3fh9mmlm7HGFthklWbMaA,9241
+md_utils/string_utils.py,sha256=Edwa07IWu7-QTNoMmvQYNnYgpwxxNh9VhXQ8AXMX3Qg,1600
+md_utils/url_utils.py,sha256=4PLqoRLVVN-W_ovcGEEicQ4zb7-Nc5u8sTCtm3qR8CM,6824
+md_utils/write_html_image_list.py,sha256=U4JantMnHe7_aEL5oLOFyz2XvbK34M5ZZ4QVbiA5H98,7532
 md_visualization/plot_utils.py,sha256=eppaGgI0k73jhvOCruNrNO-VLH3EEFpFP2la_rZo57E,10712
 md_visualization/render_images_with_thumbnails.py,sha256=XJcL5qxu5pe2LQ4MqnD-O6dM_cPxGGNoqk5U_rZzFUQ,10391
-md_visualization/visualization_utils.py,sha256=EmZFOeYbhv1la53T3eFqJ_QKs7rGgcKkAOGfDcilYfg,34811
-md_visualization/visualize_db.py,sha256=QdPbxEmiPqOTQt8oa32-ax61bTw8N9aDx_pOJn6DF90,18665
-md_visualization/visualize_detector_output.py,sha256=C-UJZhwz1v4EccTm1Z4CldG1NSDCRQ-TaJ__G6ouM88,11595
-md_visualization/visualize_megadb.py,sha256=ZHFMgQv-zjXwvyT6gEfLe2BzodvBNfQYEh0b6P_59TE,6188
-taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py,sha256=zDercLXW2tdAdLSsyO7mJYzQD93Ie3hRvW8zHPz_N0k,16516
-taxonomy_mapping/map_new_lila_datasets.py,sha256=tPM-uv5nDhCtUaCLV4UtHwN3AS-4GggxLOKfuPVR7iY,4032
-taxonomy_mapping/prepare_lila_taxonomy_release.py,sha256=1bZ7QkRjDLkRapytQsWbLvt21_sgDPQAr5Juj2fvde0,4266
-taxonomy_mapping/preview_lila_taxonomy.py,sha256=OfiQeVUWBesWE52ZuAMsd53Iv_ZOzqqZhS2Emxs-bac,20079
+md_visualization/visualization_utils.py,sha256=AZyetIxwnAa5eLPPkMvArVCX2ORf6UFJ3Uw39D5mXsY,46496
+md_visualization/visualize_db.py,sha256=fleCCGRBoKkdfBjgt277_EjbidnGI4RcunZosVN5_Ms,19616
+md_visualization/visualize_detector_output.py,sha256=aeg8DbwfddW5CDe84V2dt07eWMyxr4QdFcwTYbC_Lnk,15814
+taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py,sha256=kFDp6r25LhYVkyrm-35TgBc2vgXXh6SmoARqO4aE9PU,16517
+taxonomy_mapping/map_new_lila_datasets.py,sha256=rJlj-HuP9wNN2RvIlcWfqnW5N7cyiGLWglbe3FsFG0Q,4324
+taxonomy_mapping/prepare_lila_taxonomy_release.py,sha256=Ser_lwpbYR75fMMcE49uT90t7o02dRZ7wY0GUyhzK9c,4357
+taxonomy_mapping/preview_lila_taxonomy.py,sha256=iCcvf8dDsh1WZIZWq2ppua5wloAst6F6lphsS9vRTKQ,20144
 taxonomy_mapping/retrieve_sample_image.py,sha256=BySUy69DeGwPiIs9Ws5vIILJCTXeVImE5AVoawOiECM,1992
 taxonomy_mapping/simple_image_download.py,sha256=dXXVhhaR_bI-Elmk4Tmjt2ftdYzHbkuJCTzIMOJfLKs,6874
-taxonomy_mapping/species_lookup.py,sha256=wuyrZdFjIGmMdOoRgbON1AHcGEVZ1LjyOhfPE1jTJjY,27402
-taxonomy_mapping/taxonomy_csv_checker.py,sha256=db6Biubc0vLxIYe8fhkEW-GqYulT6tfPe8HOyDf3ksc,4795
+taxonomy_mapping/species_lookup.py,sha256=oRqaUbiH_xULH7z5mkrtaFhacxlyM8KT-V-c4FnNq4w,28303
+taxonomy_mapping/taxonomy_csv_checker.py,sha256=xmV2SBOfQEuZBMGmXyUzbuNxvd_oXKysXkxU6-IhKJg,4874
 taxonomy_mapping/taxonomy_graph.py,sha256=ZDm2enGanBlm8KXWvCndqmeerOp9LREaetSl-Lxy07s,12361
 taxonomy_mapping/validate_lila_category_mappings.py,sha256=CApYVWIZ8TTJ3vvQTgfjIvWDGHpPo-Zn9jqJFaw3DNw,2314
-megadetector-5.0.6.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
-megadetector-5.0.6.dist-info/METADATA,sha256=srthdZm95WW0GdGlpAqRRBSp3Uinsdwr3iGacKR3PKk,7512
-megadetector-5.0.6.dist-info/WHEEL,sha256=Xo9-1PvkuimrydujYJAjF7pCkriuXBpUPEjma1nZyJ0,92
-megadetector-5.0.6.dist-info/top_level.txt,sha256=-mFGpqnmviVz0Vyr2GxZ_kTo_PBPNoK6h4JtqIMjZGQ,88
-megadetector-5.0.6.dist-info/RECORD,,
+megadetector-5.0.8.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
+megadetector-5.0.8.dist-info/METADATA,sha256=tqdjGFYteHST4x9vGmougFqF76DH8J0Hr-wcyaAEaXg,7383
+megadetector-5.0.8.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+megadetector-5.0.8.dist-info/top_level.txt,sha256=-mFGpqnmviVz0Vyr2GxZ_kTo_PBPNoK6h4JtqIMjZGQ,88
+megadetector-5.0.8.dist-info/RECORD,,

{megadetector-5.0.6.dist-info → megadetector-5.0.8.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.3)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py

@@ -481,4 +481,4 @@ with open(wi_mapping_table_file,'w') as f:
             
     # ...for each dataset    
 
-# ...with open()
+# ...with open()

taxonomy_mapping/map_new_lila_datasets.py

@@ -15,15 +15,25 @@ import json
 # Created by get_lila_category_list.py
 input_lila_category_list_file = os.path.expanduser('~/lila/lila_categories_list/lila_dataset_to_categories.json')
 
-output_file = os.path.expanduser('~/lila/lila_additions_2022.08.22.csv')
+output_file = os.path.expanduser('~/lila/lila_additions_2023.12.29.csv')
 
 datasets_to_map = [
-    # 'NACTI'
-    # 'Channel Islands Camera Traps'
-    'ENA24'
+    'Trail Camera Images of New Zealand Animals'
     ]
 
 
+#%% Initialize taxonomic lookup
+
+from taxonomy_mapping.species_lookup import (
+    initialize_taxonomy_lookup,
+    get_preferred_taxonomic_match)
+
+# from taxonomy_mapping.species_lookup import (
+#    get_taxonomic_info, print_taxonomy_matche)
+
+initialize_taxonomy_lookup(force_init=False)
+
+
 #%% Read the list of datasets
 
 with open(input_lila_category_list_file,'r') as f:
@@ -57,46 +67,14 @@ for dataset_name in datasets_to_map:
 print('Need to create {} mappings'.format(len(category_mappings)))
 
 
-#%% Initialize taxonomic lookup
-
-from taxonomy_mapping.species_lookup import (
-    initialize_taxonomy_lookup,
-    get_preferred_taxonomic_match)
-
-# from taxonomy_mapping.species_lookup import (
-#    get_taxonomic_info, print_taxonomy_matche)
-
-initialize_taxonomy_lookup()
-
-
-#%% Manual lookup
-
-if False:
-    
-    #%%
-    
-    # q = 'white-throated monkey'
-    q = 'cingulata'
-    taxonomy_preference = 'inat'
-    m = get_preferred_taxonomic_match(q,taxonomy_preference)
-    
-    if m is None:
-        print('No match')
-    else:
-        if m.source != taxonomy_preference:
-            print('\n*** non-preferred match ***\n')
-            # raise ValueError('')
-        print(m.source)
-        print(m.taxonomy_string)
-        import clipboard; clipboard.copy(m.taxonomy_string)
-
-
 #%% Match every query against our taxonomies
 
 output_rows = []
 
 taxonomy_preference = 'inat'
 
+allow_non_preferred_matches = True
+
 # mapping_string = category_mappings[1]; print(mapping_string)
 for mapping_string in category_mappings:
     
@@ -108,7 +86,7 @@ for mapping_string in category_mappings:
 
     taxonomic_match = get_preferred_taxonomic_match(query,taxonomy_preference=taxonomy_preference)
     
-    if taxonomic_match.source == taxonomy_preference:
+    if (taxonomic_match.source == taxonomy_preference) or allow_non_preferred_matches:
     
         output_row = {
             'dataset_name': dataset_name,
@@ -148,3 +126,29 @@ output_df = pd.DataFrame(data=output_rows, columns=[
     'dataset_name', 'query', 'source', 'taxonomy_level',
     'scientific_name', 'common_name', 'taxonomy_string'])
 output_df.to_csv(output_file, index=None, header=True)
+
+
+#%% Manual lookup
+
+if False:
+    
+    #%%
+    
+    # q = 'white-throated monkey'
+    # q = 'cingulata'
+    # q = 'notamacropus'
+    q = 'porzana'
+    taxonomy_preference = 'inat'
+    m = get_preferred_taxonomic_match(q,taxonomy_preference)
+    # print(m.scientific_name); import clipboard; clipboard.copy(m.scientific_name)
+    
+    if m is None:
+        print('No match')
+    else:
+        if m.source != taxonomy_preference:
+            print('\n*** non-preferred match ***\n')
+            # raise ValueError('')
+        print(m.source)
+        print(m.taxonomy_string)
+        # print(m.scientific_name); import clipboard; clipboard.copy(m.scientific_name)
+        import clipboard; clipboard.copy(m.taxonomy_string)

taxonomy_mapping/prepare_lila_taxonomy_release.py

@@ -13,8 +13,9 @@ import os
 import json
 import pandas as pd
 
-lila_taxonomy_file = os.path.expanduser('~/git/agentmorrisprivate/lila-taxonomy/lila-taxonomy-mapping.csv')
-release_taxonomy_file = os.path.expanduser('~/lila/lila-taxonomy-mapping_release.22.08.22.0000.csv')
+lila_taxonomy_file = 'c:/git/agentmorrisprivate/lila-taxonomy/lila-taxonomy-mapping.csv'
+release_taxonomy_file = os.path.expanduser('~/lila/lila-taxonomy-mapping_release.csv')
+# import clipboard; clipboard.copy(release_taxonomy_file)
 
 # Created by get_lila_category_list.py... contains counts for each category
 lila_dataset_to_categories_file = os.path.expanduser('~/lila/lila_categories_list/lila_dataset_to_categories.json')
@@ -129,3 +130,5 @@ for i_row,row in df.iterrows():
 
 df = df.drop('source',axis=1)
 df.to_csv(release_taxonomy_file,header=True,index=False)
+
+print('Wrote final output to {}'.format(release_taxonomy_file))

taxonomy_mapping/preview_lila_taxonomy.py

@@ -15,11 +15,10 @@ from tqdm import tqdm
 import os
 import pandas as pd
 
-# lila_taxonomy_file = r"G:\git\agentmorrisprivate\lila-taxonomy\lila-taxonomy-mapping.csv"
-lila_taxonomy_file = r"G:\temp\lila\lila-taxonomy-mapping_release.22.07.03.1608.csv"
-# lila_taxonomy_file = r"G:\temp\lila\lila_additions_2022.06.29.csv"
+# lila_taxonomy_file = r"c:\git\agentmorrisprivate\lila-taxonomy\lila-taxonomy-mapping.csv"
+lila_taxonomy_file = os.path.expanduser('~/lila/lila_additions_2023.12.29.csv')
 
-preview_base = r'g:\temp\lila\lila_taxonomy_preview'
+preview_base = os.path.expanduser('~/lila/lila_taxonomy_preview')
 os.makedirs(preview_base,exist_ok=True)
 html_output_file = os.path.join(preview_base,'index.html')
 
@@ -172,15 +171,14 @@ for i_row,row in tqdm(df.iterrows(),total=len(df)):
 
 print('\nMade {} taxonomy changes'.format(n_taxonomy_changes))
 
+# Optionally re-write
 if False:
     df.to_csv(lila_taxonomy_file,header=True,index=False)
 
 
 #%% List null mappings
 
-#
-# These should all be things like "unidentified" and "fire"
-#
+# These should all be things like "empty", "unidentified", "fire", "car", etc.
 
 # i_row = 0; row = df.iloc[i_row]
 for i_row,row in df.iterrows():
@@ -393,20 +391,20 @@ remapped_queries = {'papio':'papio+baboon',
 
 import os
 from taxonomy_mapping import retrieve_sample_image
+
 scientific_name_to_paths = {}
 image_base = os.path.join(preview_base,'images')
 images_per_query = 15
 min_valid_images_per_query = 3
 min_valid_image_size = 3000
 
+# TODO: trivially prallelizable
+#
 # i_row = 0; row = df.iloc[i_row]
 for i_row,row in df.iterrows():
     
     s = row['scientific_name']
     
-    # if s != 'mirafra':
-    #    continue
-    
     if (not isinstance(s,str)) or (len(s)==0):
         continue
     
@@ -416,17 +414,17 @@ for i_row,row in df.iterrows():
         query = remapped_queries[query]
         
     query_folder = os.path.join(image_base,query)
+    os.makedirs(query_folder,exist_ok=True)
     
     # Check whether we already have enough images for this query
-    if os.path.isdir(query_folder):
-        image_files = os.listdir(query_folder)
-        image_fullpaths = [os.path.join(query_folder,fn) for fn in image_files]
-        sizes = [os.path.getsize(p) for p in image_fullpaths]
-        sizes_above_threshold = [x for x in sizes if x > min_valid_image_size]
-        if len(sizes_above_threshold) > min_valid_images_per_query:
-            # print('Skipping query {}, already have {} images'.format(s,len(sizes_above_threshold)))
-            continue
-    
+    image_files = os.listdir(query_folder)
+    image_fullpaths = [os.path.join(query_folder,fn) for fn in image_files]
+    sizes = [os.path.getsize(p) for p in image_fullpaths]
+    sizes_above_threshold = [x for x in sizes if x > min_valid_image_size]
+    if len(sizes_above_threshold) > min_valid_images_per_query:
+        print('Skipping query {}, already have {} images'.format(s,len(sizes_above_threshold)))
+        continue
+
     # Check whether we've already run this query for a previous row
     if query in scientific_name_to_paths:
         continue
@@ -448,14 +446,16 @@ from md_utils import path_utils
 all_images = path_utils.recursive_file_list(image_base,False)
 
 for fn in tqdm(all_images):
-    if fn.endswith('.jpeg'):
+    if fn.lower().endswith('.jpeg'):
         new_fn = fn[0:-5] + '.jpg'
-        # print('Renaming {} to {}'.format(fn,new_fn))
         os.rename(fn, new_fn)
 
 
 #%% Choose representative images for each scientific name
 
+# Specifically, sort by size, and take the largest unique sizes. Very small files tend
+# to be bogus thumbnails, etc.
+
 max_images_per_query = 4
 scientific_name_to_preferred_images = {}
 
@@ -506,7 +506,7 @@ for images in scientific_name_to_preferred_images.values():
 print('Using a total of {} images'.format(len(used_images)))
 used_images_set = set(used_images)
 
-import path_utils
+from md_utils import path_utils
 all_images = path_utils.recursive_file_list(image_base,False)
 
 unused_images = []
@@ -523,7 +523,7 @@ for fn in tqdm(unused_images):
 
 #%% Produce HTML preview
 
-with open(html_output_file, 'w') as f:
+with open(html_output_file, 'w', encoding='utf-8') as f:
     
     f.write('<html><head></head><body>\n')
 
@@ -555,10 +555,11 @@ with open(html_output_file, 'w') as f:
         f.write('<p class="speciesinfo_p" style="font-weight:bold;font-size:130%">')
 
         if isinstance(row.scientific_name,str):
-            f.write('{}: <b><u>{}</u></b> mapped to {} {} ({}) ({})</p>\n'.format(
+            output_string = '{}: <b><u>{}</u></b> mapped to {} {} ({}) ({})</p>\n'.format(
                 row.dataset_name, row.query, 
                 row.taxonomy_level, row.scientific_name, common_name_string,
-                row.common_name))
+                row.common_name)
+            f.write(output_string)
         else:
             f.write('{}: <b><u>{}</u></b> unmapped'.format(row.dataset_name,row.query))
 
@@ -586,6 +587,5 @@ with open(html_output_file, 'w') as f:
 
 #%% Open HTML preview
 
-from md_utils.path_utils import open_file # from ai4eutils
+from md_utils.path_utils import open_file
 open_file(html_output_file)
-