megadetector 5.0.6__py3-none-any.whl → 5.0.7__py3-none-any.whl

md_visualization/visualize_detector_output.py

@@ -3,8 +3,7 @@
 # visualize_detector_output.py
 #
 # Render images with bounding boxes annotated on them to a folder, based on a
-# detector output result file (json). The original images can be local or in
-# Azure Blob Storage.
+# detector output result file (json), optionally writing an HTML index file.
 #
 ########
 
@@ -15,51 +14,115 @@ import json
 import os
 import random
 import sys
-from typing import List, Optional
+from multiprocessing.pool import ThreadPool
+from multiprocessing.pool import Pool
+from typing import List
+from functools import partial
 
 from tqdm import tqdm
 
-from data_management.annotations.annotation_constants import (
-    detector_bbox_category_id_to_name)  # here id is int
+from data_management.annotations.annotation_constants import detector_bbox_category_id_to_name
 from md_visualization import visualization_utils as vis_utils
 from md_utils.ct_utils import get_max_conf
+from md_utils import write_html_image_list
+from detection.run_detector import get_typical_confidence_threshold_from_results
 
 
 #%% Constants
 
-# convert category ID from int to str
+# This will only be used if a category mapping is not available in the results file.
 DEFAULT_DETECTOR_LABEL_MAP = {
     str(k): v for k, v in detector_bbox_category_id_to_name.items()
 }
 
 
+#%% Support functions
+
+def render_image(entry,
+                 detector_label_map,classification_label_map,
+                 confidence_threshold,classification_confidence_threshold,
+                 render_detections_only,preserve_path_structure,out_dir,images_dir,
+                 output_image_width):
+    
+    rendering_result = {'failed_image':False,'missing_image':False,
+                        'skipped_image':False,'annotated_image_path':None,
+                        'max_conf':None,'file':entry['file']}
+    
+    image_id = entry['file']
+
+    if 'failure' in entry and entry['failure'] is not None:
+        rendering_result['failed_image'] = True
+        return rendering_result
+
+    assert 'detections' in entry and entry['detections'] is not None
+    
+    max_conf = get_max_conf(entry)
+    rendering_result['max_conf'] = max_conf
+    
+    if (max_conf < confidence_threshold) and render_detections_only:
+        rendering_result['skipped_image'] = True
+        return rendering_result
+    
+    image_obj = os.path.join(images_dir, image_id)
+    if not os.path.exists(image_obj):
+        print(f'Image {image_id} not found in images_dir')
+        rendering_result['missing_image'] = True
+        return rendering_result
+
+    # If output_image_width is -1 or None, this will just return the original image
+    image = vis_utils.resize_image(
+        vis_utils.open_image(image_obj), output_image_width)
+
+    vis_utils.render_detection_bounding_boxes(
+        entry['detections'], image, 
+        label_map=detector_label_map,
+        classification_label_map=classification_label_map,
+        confidence_threshold=confidence_threshold,
+        classification_confidence_threshold=classification_confidence_threshold)
+
+    if not preserve_path_structure:
+        for char in ['/', '\\', ':']:
+            image_id = image_id.replace(char, '~')
+        annotated_img_path = os.path.join(out_dir, f'anno_{image_id}')
+    else:
+        assert not os.path.isabs(image_id), "Can't preserve paths when operating on absolute paths"
+        annotated_img_path = os.path.join(out_dir, image_id)
+        os.makedirs(os.path.dirname(annotated_img_path),exist_ok=True)
+        
+    image.save(annotated_img_path)
+    rendering_result['annotated_image_path'] = annotated_img_path        
+
+    return rendering_result
+
+
 #%% Main function
 
 def visualize_detector_output(detector_output_path: str,
                               out_dir: str,
                               images_dir: str,
-                              is_azure: bool = False,
                               confidence_threshold: float = 0.15,
                               sample: int = -1,
                               output_image_width: int = 700,
-                              random_seed: Optional[int] = None,
+                              random_seed: int = None,
                               render_detections_only: bool = False,
                               classification_confidence_threshold = 0.1,
                               html_output_file = None,
                               html_output_options = None,
-                              preserve_path_structure = False) -> List[str]:
+                              preserve_path_structure = False,
+                              parallelize_rendering = False,
+                              parallelize_rendering_n_cores = 10,
+                              parallelize_rendering_with_threads = True) -> List[str]:
     
     """
-    Draw bounding boxes on images given the output of the detector.
+    Draw bounding boxes on images given the output of a detector.
 
     Args:
         detector_output_path: str, path to detector output json file
         out_dir: str, path to directory for saving annotated images
-        images_dir: str, path to local images dir, or a SAS URL to an Azure Blob
-            Storage container
-        is_azure: bool, whether images_dir points to an Azure URL
+        images_dir: str, path to images dir
         confidence: float, threshold above which annotations will be rendered
         sample: int, maximum number of images to annotate, -1 for all
+        random_seed: seed for sampling (not relevant if sample == -1)
         output_image_width: int, width in pixels to resize images for display,
             set to -1 to use original image width
         random_seed: int, for deterministic image sampling when sample != -1
@@ -68,16 +131,11 @@ def visualize_detector_output(detector_output_path: str,
     Returns: list of str, paths to annotated images
     """
     
-    assert confidence_threshold >= 0 and confidence_threshold <= 1, (
-        f'Confidence threshold {confidence_threshold} is invalid, must be in (0, 1).')
-
-    assert os.path.exists(detector_output_path), (
-        f'Detector output file does not exist at {detector_output_path}.')
+    assert os.path.exists(detector_output_path), \
+        'Detector output file does not exist at {}'.format(detector_output_path)
 
-    if is_azure:
-        from md_utils import sas_blob_utils
-    else:
-        assert os.path.isdir(images_dir)
+    assert os.path.isdir(images_dir), \
+        'Image folder {} is not available'.format(images_dir)
 
     os.makedirs(out_dir, exist_ok=True)
 
@@ -89,12 +147,18 @@ def visualize_detector_output(detector_output_path: str,
     assert 'images' in detector_output, (
         'Detector output file should be a json with an "images" field.')
     images = detector_output['images']
-
+    
+    if confidence_threshold is None:
+        confidence_threshold = get_typical_confidence_threshold_from_results(detector_output)
+        
+    assert confidence_threshold >= 0 and confidence_threshold <= 1, (
+        f'Confidence threshold {confidence_threshold} is invalid, must be in (0, 1).')
+    
     if 'detection_categories' in detector_output:
         print('Using custom label mapping')
         detector_label_map = detector_output['detection_categories']
     else:
-        detector_label_map = DEFAULT_DETECTOR_LABEL_MAP        
+        detector_label_map = DEFAULT_DETECTOR_LABEL_MAP
 
     num_images = len(images)
     print(f'Detector output file contains {num_images} entries.')
@@ -118,85 +182,89 @@ def visualize_detector_output(detector_output_path: str,
     print('Rendering detections above a confidence threshold of {}'.format(
         confidence_threshold))
     
-    num_saved = 0
-    annotated_img_paths = []
-    failed_images = []
-    missing_images = []
-    
     classification_label_map = None
     
     if 'classification_categories' in detector_output:
         classification_label_map = detector_output['classification_categories']
         
-    for entry in tqdm(images):
-        
-        image_id = entry['file']
-
-        if 'failure' in entry and entry['failure'] is not None:
-            failed_images.append(image_id)
-            continue
-
-        assert 'detections' in entry and entry['detections'] is not None
-        
-        max_conf = get_max_conf(entry)
-        if (max_conf < confidence_threshold) and render_detections_only:
-            continue
+    rendering_results = []
+    
+    if parallelize_rendering:
         
-        if is_azure:
-            blob_uri = sas_blob_utils.build_blob_uri(
-                container_uri=images_dir, blob_name=image_id)
-            if not sas_blob_utils.check_blob_exists(blob_uri):
-                container = sas_blob_utils.get_container_from_uri(images_dir)
-                print(f'Image {image_id} not found in blob container '
-                      f'{container}; skipped.')
-                continue
-            # BytesIO object
-            image_obj, _ = sas_blob_utils.download_blob_to_stream(blob_uri)
+        if parallelize_rendering_with_threads:
+            worker_string = 'threads'
         else:
-            image_obj = os.path.join(images_dir, image_id)
-            if not os.path.exists(image_obj):
-                print(f'Image {image_id} not found in images_dir')
-                missing_images.append(image_id)
-                continue
-
-        image = vis_utils.resize_image(
-            vis_utils.open_image(image_obj), output_image_width)
-
-        vis_utils.render_detection_bounding_boxes(
-            entry['detections'], image, label_map=detector_label_map,
-            classification_label_map = classification_label_map,
-            confidence_threshold=confidence_threshold,
-            classification_confidence_threshold=classification_confidence_threshold)
-
-        if not preserve_path_structure:
-            for char in ['/', '\\', ':']:
-                image_id = image_id.replace(char, '~')
-            annotated_img_path = os.path.join(out_dir, f'anno_{image_id}')
+            worker_string = 'processes'
+            
+        if parallelize_rendering_n_cores is None:
+            if parallelize_rendering_with_threads:
+                pool = ThreadPool()
+            else:
+                pool = Pool()
         else:
-            assert not os.path.isabs(image_id), "Can't preserve paths when operating on absolute paths"
-            annotated_img_path = os.path.join(out_dir, image_id)
-            os.makedirs(os.path.dirname(annotated_img_path),exist_ok=True)
-        annotated_img_paths.append(annotated_img_path)
-        image.save(annotated_img_path)
-        num_saved += 1
-
-        if is_azure:
-            image_obj.close()
-
+            if parallelize_rendering_with_threads:
+                pool = ThreadPool(parallelize_rendering_n_cores)
+            else:
+                pool = Pool(parallelize_rendering_n_cores)
+            print('Rendering images with {} {}'.format(parallelize_rendering_n_cores,
+                                                       worker_string))            
+        rendering_results = list(tqdm(pool.imap(
+                                 partial(render_image,detector_label_map=detector_label_map,
+                                         classification_label_map=classification_label_map,
+                                         confidence_threshold=confidence_threshold,
+                                         classification_confidence_threshold=classification_confidence_threshold,
+                                         render_detections_only=render_detections_only,
+                                         preserve_path_structure=preserve_path_structure,
+                                         out_dir=out_dir,
+                                         images_dir=images_dir,
+                                         output_image_width=output_image_width),
+                                 images), total=len(images)))
+        
+    else:
+                
+        for entry in tqdm(images):
+            
+            rendering_result = render_image(entry,detector_label_map,classification_label_map,
+                                            confidence_threshold,classification_confidence_threshold,
+                                            render_detections_only,preserve_path_structure,out_dir,
+                                            images_dir,output_image_width)
+            rendering_results.append(rendering_result)
+        
     # ...for each image
     
+    failed_images = [r for r in rendering_results if r['failed_image']]
+    missing_images = [r for r in rendering_results if r['missing_image']]
+    skipped_images = [r for r in rendering_results if r['skipped_image']]
+    
     print('Skipped {} failed images (of {})'.format(len(failed_images),len(images)))
     print('Skipped {} missing images (of {})'.format(len(missing_images),len(images)))
+    print('Skipped {} below-threshold images (of {})'.format(len(skipped_images),len(images)))
     
-    print(f'Rendered detection results on {num_saved} images, '
-          f'saved to {out_dir}')
+    print(f'Rendered detection results to {out_dir}')
 
+    annotated_image_paths = [r['annotated_image_path'] for r in rendering_results if \
+                             r['annotated_image_path'] is not None]
+    
     if html_output_file is not None:
-        from md_utils import write_html_image_list
-        write_html_image_list.write_html_image_list(html_output_file,annotated_img_paths,
+        
+        html_dir = os.path.dirname(html_output_file)
+        
+        html_image_info = []
+        
+        for r in rendering_results:
+            d = {}
+            annotated_image_path_relative = os.path.relpath(r['annotated_image_path'],html_dir)
+            d['filename'] = annotated_image_path_relative
+            d['textStyle'] = \
+             'font-family:verdana,arial,calibri;font-size:80%;' + \
+                 'text-align:left;margin-top:20;margin-bottom:5'
+            d['title'] = '{} (max conf: {})'.format(r['file'],r['max_conf'])
+            html_image_info.append(d)
+            
+        _ = write_html_image_list.write_html_image_list(html_output_file,html_image_info,
                                                     options=html_output_options)
         
-    return annotated_img_paths
+    return annotated_image_paths
 
 
 #%% Command-line driver
@@ -221,15 +289,9 @@ def main() -> None:
              'above which to visualize bounding boxes')
     parser.add_argument(
         '-i', '--images_dir', type=str, default=None,
-        help='Path to a local directory or a SAS URL (in double quotes) to an '
-             'Azure blob storage container where images are stored. This '
+        help='Path to a local directory where images are stored. This '
              'serves as the root directory for image paths in '
-             'detector_output_path. If an Azure URL, pass the -a/--is-azure '
-             'flag. You can use Azure Storage Explorer to obtain a SAS URL.')
-    parser.add_argument(
-        '-a', '--is-azure', action='store_true',
-        help='Flag that indidcates images_dir is an Azure blob storage '
-             'container URL.')
+             'detector_output_path.')
     parser.add_argument(
         '-n', '--sample', type=int, default=-1,
         help='Number of images to be annotated and rendered. Set to -1 '
@@ -266,7 +328,6 @@ def main() -> None:
         out_dir=args.out_dir,
         confidence_threshold=args.confidence,
         images_dir=args.images_dir,
-        is_azure=args.is_azure,
         sample=args.sample,
         output_image_width=args.output_image_width,
         random_seed=args.random_seed,
@@ -290,17 +351,37 @@ if False:
 
     #%%
     
-    detector_output_path = r"g:\temp\animl-runs\animl-runs\Coati_v2\manifest.csv.json"
+    detector_output_path = os.path.expanduser('~/postprocessing/bellevue-camera-traps/bellevue-camera-traps-2023-12-05-v5a.0.0/combined_api_outputs/bellevue-camera-traps-2023-12-05-v5a.0.0_detections.json')
     out_dir = r'g:\temp\preview'
-    images_dir = r"g:\temp\animl-runs\animl-runs\Coati_v2"
-    is_azure = False
+    images_dir = r'g:\camera_traps\camera_trap_images'
     confidence_threshold = 0.15
-    sample = -1
+    sample = 50
     output_image_width = 700
-    random_seed = None
-    render_detections_only = False
+    random_seed = 1
+    render_detections_only = True
     classification_confidence_threshold = 0.1
-    html_output_file = None
-    html_output_options = None,
+    html_output_file = os.path.join(out_dir,'index.html')
+    html_output_options = None
     preserve_path_structure = False
-        
+    parallelize_rendering = True
+    parallelize_rendering_n_cores = 10
+    parallelize_rendering_with_threads = False
+
+    _ = visualize_detector_output(detector_output_path,
+                              out_dir,
+                              images_dir,
+                              confidence_threshold,
+                              sample,
+                              output_image_width,
+                              random_seed,
+                              render_detections_only,
+                              classification_confidence_threshold,
+                              html_output_file,
+                              html_output_options,
+                              preserve_path_structure,
+                              parallelize_rendering,
+                              parallelize_rendering_n_cores,
+                              parallelize_rendering_with_threads)
+    
+    from md_utils.path_utils import open_file
+    open_file(html_output_file)

{megadetector-5.0.6.dist-info → megadetector-5.0.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: megadetector
-Version: 5.0.6
+Version: 5.0.7
 Summary: MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.
 Author-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
 Maintainer-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
@@ -68,7 +68,7 @@ If you are a computer-vision-y person looking to run or fine-tune MegaDetector p
 
 ## Reasons you might want to use this package
 
-If you want to programatically interact with the postprocessing tools from the MegaDetector repo, or programmatically run MegaDetector in a way that produces [Timelapse](https://saul.cpsc.ucalgary.ca/timelapse)-friendly output (i.e., output in the standard [MegaDetector output format](https://github.com/agentmorris/MegaDetector/tree/main/api/batch_processing#megadetector-batch-output-format)), this package might be for you.
+If you want to programmatically interact with the postprocessing tools from the MegaDetector repo, or programmatically run MegaDetector in a way that produces [Timelapse](https://saul.cpsc.ucalgary.ca/timelapse)-friendly output (i.e., output in the standard [MegaDetector output format](https://github.com/agentmorris/MegaDetector/tree/main/api/batch_processing#megadetector-batch-output-format)), this package might be for you.
 
 Although even if that describes you, you <i>still</i> might be better off cloning the MegaDetector repo.  Pip-installability requires that some dependencies be newer than what was available at the time MDv5 was trained, so results are <i>very slightly</i> different than results produced in the "official" environment.  These differences <i>probably</i> don't matter much, but they have not been formally characterized.
 

{megadetector-5.0.6.dist-info → megadetector-5.0.7.dist-info}/RECORD

@@ -8,29 +8,30 @@ api/batch_processing/api_core/server_utils.py,sha256=oFusP1E29op5DN1nEaR-jQZgREx
 api/batch_processing/api_core/batch_service/score.py,sha256=ZuPQV7O1u9QNPhWVSYxQqvYgXo9p15e-XhnUyuz0vLE,17347
 api/batch_processing/api_core_support/aggregate_results_manually.py,sha256=8yDXbw12G8Y6SOv09tY-0hPXMNG_iRPv6mzxBiccsaU,2275
 api/batch_processing/api_support/summarize_daily_activity.py,sha256=SmRGAMWTKXf9bDXUPsTySMiIg8K1LDkAC8KVBVH_mPg,5383
-api/batch_processing/data_preparation/manage_local_batch.py,sha256=nNpQWPkdYP5Z122fg8otvr7bHJFkVIoQANh6f09yTlw,85371
-api/batch_processing/data_preparation/manage_video_batch.py,sha256=ISpM0bO5RJ_byWhuJqddGZuaE_rxntidhxJz6teFH5E,9592
+api/batch_processing/data_preparation/manage_local_batch.py,sha256=Nb9MxJyAJC2e4twWkoGfI-crSSgB9g8Ue28cbbeE5QA,88618
+api/batch_processing/data_preparation/manage_video_batch.py,sha256=fobPIMmfvdqa1OzxsurEYCFVnUTHGrtrGBiCq3xnYHs,9668
 api/batch_processing/integration/digiKam/setup.py,sha256=7P1X3JYrBDXmLUeLRrzxNfDkL5lo-pY8nXsp9Cz8rOI,203
 api/batch_processing/integration/digiKam/xmp_integration.py,sha256=AbGPTe9RjjOkKdiZDSElai61QyfeiLQQqJR2fiJpymA,17775
 api/batch_processing/integration/eMammal/test_scripts/config_template.py,sha256=UnvrgaFRBu59MuVUJa2WpG8ebcOJWcNeZEx6GWuYLzc,73
 api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py,sha256=eIzEKiwzCfifCOCGf-jf8G4dMuzyxQMWlrFzt-Z-nVk,3608
 api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py,sha256=OYMu97p8vprSv03QcnS6aSxPBocn9sgaozfUqq_JpyM,1369
-api/batch_processing/postprocessing/add_max_conf.py,sha256=pqD-I-e0vqtf49Jm-SNhh9u7jhnVlyi4Lf5prNksldU,1529
+api/batch_processing/postprocessing/add_max_conf.py,sha256=y4Xr_OHRxcop3vsLWQJ56eYIemm2HHKqVfvKJonTcQA,1530
 api/batch_processing/postprocessing/categorize_detections_by_size.py,sha256=b_O2OM44zIXewR4RjzeS2ue-32k5jE6KgjiPn8JRxAA,4877
 api/batch_processing/postprocessing/combine_api_outputs.py,sha256=WsOV4EsK9JUCMka1_-u-vinmWc6Ko8B0PD5fmwoXHh0,8233
-api/batch_processing/postprocessing/compare_batch_results.py,sha256=puzEA02yrCjtfjdhur0RSnqyIjG09hvxJQdEMS-srgU,32705
+api/batch_processing/postprocessing/compare_batch_results.py,sha256=65Kq6mChsPElQfjhWgLDmnO9b6igatQvXiasB2YVHno,34652
 api/batch_processing/postprocessing/convert_output_format.py,sha256=aLboVVZdlGUNYOZhme0w8LtYrd04i15oK0apOgZaYWk,12947
-api/batch_processing/postprocessing/load_api_results.py,sha256=VcqVjNzDjLFQCCn-gtFEHR19rulm7stLiXsWcz_XlUg,7416
+api/batch_processing/postprocessing/load_api_results.py,sha256=1BwpXUUQiGJeOUDfQTiA9thNd5jbSbOU3siTO1_Dw5s,6997
 api/batch_processing/postprocessing/md_to_coco.py,sha256=dRAkCGWtcNy_vsSTkX1h_0DZAsW6zNO7F-8XSkR8wAo,10139
-api/batch_processing/postprocessing/md_to_labelme.py,sha256=abtUHJA0WMt3QMpEvFVrYaKsAJhkaSetl51RwP_DMyI,7026
+api/batch_processing/postprocessing/md_to_labelme.py,sha256=lfheIrXqzjq6lInmlYgYq354PrVvH2SPNXKr8e3S_DQ,7075
 api/batch_processing/postprocessing/merge_detections.py,sha256=B4QnqW9nvcEJpXzAK20TVB0t6L8c7PR5OjPy8FX-5Z8,15930
-api/batch_processing/postprocessing/postprocess_batch_results.py,sha256=WqMSWQUpJLt48IytGKLpAcfm9NX92zokL7CIdMsHAtM,68706
+api/batch_processing/postprocessing/postprocess_batch_results.py,sha256=l_uyOTTINq9GBZlHsAnPteEvA-rWmKZH-eWVcqbMPUM,73653
+api/batch_processing/postprocessing/render_detection_confusion_matrix.py,sha256=h-a7tWNBSe3VRUg-Z4aX-ySUzrF8NfiEYWA1lHbZrmo,25040
 api/batch_processing/postprocessing/separate_detections_into_folders.py,sha256=l5NKxDDxROc2EXt8EslrswXAZkQXgWTy5FSqCqa09Ug,28720
-api/batch_processing/postprocessing/subset_json_detector_output.py,sha256=Q4V7RWSjrBCt7VEsakx0c_haHlRdrLSzy0uqD5ELjp4,20809
-api/batch_processing/postprocessing/top_folders_to_bottom.py,sha256=crm_UX8jE6JurUHmS2yI-awYn3_MXqvo2xOlFZ_qig8,5475
-api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=-XQ5IKY33y4CR1ELj-DOFbvtH51d-CtB6Dc-wiDOXoE,6899
-api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=Q0dRNGRO6l83pTbqkfiF0qOFsy2wfbpher3fd23Y_TU,2184
-api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=USbK5LKNXu6MTbfznK2su3nV085ivC39-a9AhEKVOWc,54850
+api/batch_processing/postprocessing/subset_json_detector_output.py,sha256=EROwcj4K-abAwzyZjPCQocuayIVma85lV-D6WvvRMuc,26368
+api/batch_processing/postprocessing/top_folders_to_bottom.py,sha256=etJK9DmHppMe3WqGXypuilW-n-7hOjOO9w_k1khlaVU,5476
+api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=fYqPZhaL-6cbpKHz96O3Ch65Y8xux2LQ2-ZlMGhOlM0,9053
+api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=YdMvM814TX0ZRTnP7BfowE62PoMoCOYcJOFl69DlKhQ,2189
+api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=D-q20g9kLXCNB8IMyeLYxdMSvipzmgu2buEh--HJrC0,62882
 api/synchronous/api_core/animal_detection_api/api_backend.py,sha256=PJXV0RFb6FoPBmdRug5W_5nbFwY2C_8CvDpFHjDs9w4,4934
 api/synchronous/api_core/animal_detection_api/api_frontend.py,sha256=_FGLf5C2tXQABFEGaA2Kzq05hj_D60BaIfWLCI-Os_4,10690
 api/synchronous/api_core/animal_detection_api/config.py,sha256=yEf7JZwRJCtHEV80kYvnNnUFJNds_AYLhomffwfFQi0,1017
@@ -70,7 +71,7 @@ classification/json_to_azcopy_list.py,sha256=o57wLHJPDrP9OPSY-3x81WI3mmcH1DyIOUh
 classification/json_validator.py,sha256=ZizcEPpW1J26p-oGyfvcffBy2voNRKCNXKF8NtxIt5A,26618
 classification/map_classification_categories.py,sha256=2B4K-TdE77VNw8XG1h8X7CuUvw0JSIrALdy6a1FvkXw,10738
 classification/merge_classification_detection_output.py,sha256=2FDTauvkbMZ3putJH837Ux67HTGsCAnGCOXhnnqjt6g,20123
-classification/prepare_classification_script.py,sha256=6BRxiEPSIl3nTVrZHE5qqUGDe_AxAEqnUg7sxMZSFMg,6141
+classification/prepare_classification_script.py,sha256=7xwqws57Fkn0rmH5sADlem9trOJkiriSRwPredeIXho,5952
 classification/prepare_classification_script_mc.py,sha256=IMCsLyGL70cViVTH0eow0sYDM9E81AsBGrctNveXP10,7440
 classification/run_classifier.py,sha256=eBpkZzP7TtrnwOIlc99fTpe1QocmDuERaIw9mXqwAWI,9363
 classification/save_mislabeled.py,sha256=WmOKNXgrvvIkUdehiiWHNiKc5M7q0UM2If0vea0_7K8,3466
@@ -85,26 +86,26 @@ data_management/cct_json_utils.py,sha256=JX5pJh5QLyKDhcXheUYgbRSd99uB9Ui-EfsRZ_F
 data_management/cct_to_csv.py,sha256=urIL8IUByhKZ4FLLa9TKlzT6mu8upLzAPN1WNnDZdIY,3859
 data_management/cct_to_md.py,sha256=0QtqUdUkrema2BSNTeJqHYkDuwOLc7tOQwq1KxTbtPE,4485
 data_management/cct_to_wi.py,sha256=nJKUhLXcZXKE5tAR9UxbqCjeikfaABfB746wpv-1BmI,8336
-data_management/coco_to_yolo.py,sha256=mfjv7ELP8AgrdRRbql_7YRaIQPRtfLWppJXsRnX2aSo,25050
-data_management/generate_crops_from_cct.py,sha256=6N4pj51gOVTXOi8REfrR5-X56NlBI_p-MHZd4hxBT_Q,4282
+data_management/coco_to_yolo.py,sha256=8c-9cCjelKTwMOL6gQc9oAWum7UPxIr0FP_tiK8NyLc,25880
+data_management/generate_crops_from_cct.py,sha256=m6HJ8bB4N50HYV4SXAUV43k1XJl71QZmmWZ4L-9T45Y,4283
 data_management/get_image_sizes.py,sha256=yUCI5zQmA9G_GDaQiApwoafmO37cUi97dw-Ekh5leOE,4220
-data_management/labelme_to_coco.py,sha256=E9EdXsHkEBZ6KLZzYNGA3tQMJdwDpzJzJtF5kZvRKWA,12923
-data_management/labelme_to_yolo.py,sha256=H0bLty1yLm4Cz7cGuecwxUIaRk72PVokNLZTYB8hkCI,8479
+data_management/labelme_to_coco.py,sha256=9RpOp-IV5miJag4KInLijR7koH8eZSztKdAmArhoMx4,14204
+data_management/labelme_to_yolo.py,sha256=XjhrmoGxyo1N-N8kueGzmy_m6FWR4SO8sNHFppoH-GQ,8480
 data_management/ocr_tools.py,sha256=8cVJMQvzvv_6HXV8zMR4nJH72-L_f3Dy9IjIb3E32Js,29920
 data_management/read_exif.py,sha256=HGCp5gvD8MHQ0xGGTX2_PD5JHFTdMtqjZ8ql2pt5Fn0,19036
 data_management/remove_exif.py,sha256=_WDrKfRwK0UWCkj4SiLutGCd7-WRaKYoTgLfBWPDhGU,1555
-data_management/resize_coco_dataset.py,sha256=whm-XN7btC914duBZBJDfphVujosJKzJdH1XHM5XPDU,7414
-data_management/yolo_output_to_md_output.py,sha256=PznmANlgfMNzou7OI1JH0e76j5pS9VcYMxuXau-Ys30,14974
-data_management/yolo_to_coco.py,sha256=ybNqFlfasMfxzPx9u3A-GH1TCbMlnO5s2gX2CmyzXoA,7448
+data_management/resize_coco_dataset.py,sha256=pG1yVktPSp6Vc3DThrJO7lmo67_KvOdqEtFpwM6QjOA,7398
+data_management/yolo_output_to_md_output.py,sha256=vxUdn4bqg0S67ozvxtnlX77X6S7nCvyZbKAyvCh_Suc,16313
+data_management/yolo_to_coco.py,sha256=Xb9UVO-HHYrkJyxbASWJDZrZCyW3JwBPI_WN5SQHys4,8078
 data_management/annotations/annotation_constants.py,sha256=P2CZCbAE0ImLLfaNRb1SMlP3q1fULWAIjgrYOrF9L0g,1566
 data_management/databases/add_width_and_height_to_db.py,sha256=71mOEK3xo9gbxK1TVZzBA9nNi-1ElmBZbIPKrUm9XG0,619
 data_management/databases/combine_coco_camera_traps_files.py,sha256=cwu_REQXdHWfVLtCvTvFEIvM7z8GwHVoawVuHcWv2aw,6888
-data_management/databases/integrity_check_json_db.py,sha256=x9BO7fDXCfdyHc-oiwVoeesIp_M9Q2bUOdh9DsohTbc,14377
+data_management/databases/integrity_check_json_db.py,sha256=aQe36eEnhxHFpm9XGmFXCf4jsTvfXuBWMfKdIKKN4tU,14535
 data_management/databases/remove_corrupted_images_from_db.py,sha256=Dod8UQDFveAUJlrH9Svcp_HezdILRHp74TbAl3YGf84,6138
 data_management/databases/subset_json_db.py,sha256=UeVn3jlcpEw-K9E-QyRwxdzl7zaV80iv_u4v6kHUd_E,2749
 data_management/importers/add_nacti_sizes.py,sha256=qsBHPyJ7MPzl0vgJX5iErZxWkTJ6QRcyLJ8GM2YBu2U,1172
 data_management/importers/add_timestamps_to_icct.py,sha256=8XhQAIt_qw63qTMPobCKGl4O9RQZvZmhbmiSetOyNvA,2459
-data_management/importers/animl_results_to_md_results.py,sha256=muhwUQxMSoMSeNKEYNJu2E2d4h0tv_RrKoSgUWX1hiQ,4896
+data_management/importers/animl_results_to_md_results.py,sha256=tzYaPpiUte5A1VHulAbYO9-hzUIpE1xI5lJp6hS_JoI,4899
 data_management/importers/auckland_doc_test_to_json.py,sha256=9Fg-n_Kj2jK5iZVaPrioNkhlLNxGnrU5GS_44lsadKo,12910
 data_management/importers/auckland_doc_to_json.py,sha256=qSjBcR7FTd5_J2LO6WOoIFxSnE2IiIIqRkhbydULV7s,5952
 data_management/importers/awc_to_json.py,sha256=jLXmwGaq81wgH7HcpbAJoNMQP2CqkdfI1mvShdTGeqw,5307
@@ -123,7 +124,7 @@ data_management/importers/jb_csv_to_json.py,sha256=u3IZwDboObYlxtUSa35G8P3t_L48m
 data_management/importers/mcgill_to_json.py,sha256=ZxsNW9qFi6Kyu8SJ0BB5uK7AMuBW92QOOKXHPbIgPwY,6718
 data_management/importers/missouri_to_json.py,sha256=y9lbLaD8bGM4m9iqGHIicyZOByeJGfZOF51RikHMSFU,14840
 data_management/importers/nacti_fieldname_adjustments.py,sha256=57PyfOft2Ws-1AcG4_9mzOcB3uW4IFxaZ3z0LsItUUU,2045
-data_management/importers/noaa_seals_2019.py,sha256=WHXqDmOetJYcrBkyNww4ZFQbh4VpCjQ7V4U3RpbBt94,5144
+data_management/importers/noaa_seals_2019.py,sha256=wYcjhARv4IUJgawXcAnwIAOGZq5GORG8ElE_7JZSVCk,5145
 data_management/importers/pc_to_json.py,sha256=9Nin7R47aaE5bjXjvq7A2trv2vFdJVYzhLHwLFji5Tg,10718
 data_management/importers/plot_wni_giraffes.py,sha256=V_kAzbYjtXEBUCdSwSGsEEemLN9aVyZuKhoSZQEvkCI,3787
 data_management/importers/prepare-noaa-fish-data-for-lila.py,sha256=WIkuR4ozEeHwzQPs54jIDIbAgKf1I4taZNgpHHzh-Rc,12774
@@ -140,7 +141,7 @@ data_management/importers/ubc_to_json.py,sha256=MP_whIR-CVhNPCE3vQF_tk-6_EpmxWwR
 data_management/importers/umn_to_json.py,sha256=emUVCtNfbJmgHS22fBL8GaAMiblaJen52-IuqiFiWyI,16177
 data_management/importers/wellington_to_json.py,sha256=QFcVfAxflUVHTMuGhXGxe3z3iMKJ0B8Nziwpx6XcoLE,7671
 data_management/importers/wi_to_json.py,sha256=xuHFXE6tuaUnZmiFik18_3UCSCQx9abaG_2TnaRn0Xg,13656
-data_management/importers/zamba_results_to_md_results.py,sha256=acU63-F4NVPNj7h0WW53mfUrvSWf9dn14-WzZxrog94,5591
+data_management/importers/zamba_results_to_md_results.py,sha256=UV0Iczxf_ghR3yL8D8KUAEg1j81_BavdzWhAFtg6wHQ,5594
 data_management/importers/eMammal/copy_and_unzip_emammal.py,sha256=gVB0drYUeCghWXFDpaJkCL0qdmFjMW75YAEEhFe38js,6080
 data_management/importers/eMammal/eMammal_helpers.py,sha256=Sv6PBAMDdlgwiek6Q3R6Rjio2RjtA-JpfgBr_Fmr9kA,6838
 data_management/importers/eMammal/make_eMammal_json.py,sha256=6C_-6Qk-Xhz_87DEPHA-txw90AvXrybJy1PbQXQbqwo,6987
@@ -148,51 +149,54 @@ data_management/importers/snapshotserengeti/make_full_SS_json.py,sha256=khE3W0pO
 data_management/importers/snapshotserengeti/make_per_season_SS_json.py,sha256=sAwvcR2siwblgY3LfTsbH4mXOXvJZCA246QIsQWuQBA,4316
 data_management/lila/add_locations_to_island_camera_traps.py,sha256=nsIJXyw2IhOwwM9A0SCn108Fg297fRUdADXGUAN8Y34,2561
 data_management/lila/add_locations_to_nacti.py,sha256=KVMWwSJx-gYI_J6J8y-AqsWnOTgidtebotJjYPfsj00,5017
-data_management/lila/create_lila_test_set.py,sha256=oYgOsUJjjbpfCs2Gx1CM6l2UK4xXmJPgRlwW4DOs1yY,4791
-data_management/lila/create_links_to_md_results_files.py,sha256=19YyXy4smcbjGbLYJOx0usbu5Rq2GQ1iDG4tLgOj1UM,3916
-data_management/lila/download_lila_subset.py,sha256=b25Pnql93Gtn-ZZmxQ0y30LiJMqxv9rB14z6Hn5T1TA,4382
-data_management/lila/generate_lila_per_image_labels.py,sha256=2dIQaVYTnyb5X_zfqQj1DpSqUh8XU0I8SgZkBAHQJiA,16856
-data_management/lila/get_lila_annotation_counts.py,sha256=m_tiXkpz3_KxVH4adDay_anUQ4OSdCkmOg7cUSP0tbI,5326
+data_management/lila/create_lila_blank_set.py,sha256=ScGlqalOySsmZEvYtEn4pGNxGOj0qHyxGs-F5URTmk8,16359
+data_management/lila/create_lila_test_set.py,sha256=WxM-LuhtNiee3CLeVPxUEWsfbybgZd7oluZu6epl69A,4825
+data_management/lila/create_links_to_md_results_files.py,sha256=f0pXY2Lyj9DtRlgFpmLqNBs2qWd--B8N6UAt8E26tcM,3916
+data_management/lila/download_lila_subset.py,sha256=nJjzKuMOYJa2lBJcXOEZloWjbFlQW_USke49DJdNruM,5283
+data_management/lila/generate_lila_per_image_labels.py,sha256=b0FDiYbs5BI8wdk221ysr-p1PsprfRFwMIgv65BYS6Y,17351
+data_management/lila/get_lila_annotation_counts.py,sha256=QVSKCmeLzliFZimjzi8AClS0Gz94pDMYckjw2cOm-7E,5490
 data_management/lila/get_lila_image_counts.py,sha256=r5p2wPL5vuKKO8DWia3Tll-EZZWFNUvax6ljaYtrKsk,3625
-data_management/lila/lila_common.py,sha256=olg_eR6Ul2kUQ7tIsndzVIJpils5oXNANYSGBmS455E,8667
-detection/process_video.py,sha256=tV7MTaS5mlSaWhAdDP4tvaMN_VCG27s-qr9yzf9Cwow,25915
-detection/pytorch_detector.py,sha256=K2mk-zlO81naypKzqdYYxlzX9xcaletDuq0MnNCCc10,11993
-detection/run_detector.py,sha256=TwkR0BSNeUvUmg5y-DJ6TtTnIq8Lv547JL4a9aiWpwI,24225
-detection/run_detector_batch.py,sha256=-8URucPBn0DVTZ7_U1bYA8fUYmiehTHWVb_ObZ7YVTo,43443
-detection/run_inference_with_yolov5_val.py,sha256=N77PkRM4dyOQCVik_BxPqNtIqbYb7jHphByGtB4XOf0,28323
-detection/run_tiled_inference.py,sha256=cs1IehE2DXj8Nr3CbnYMXqwcFM1vUBT1Rm5We5nlcSM,28785
+data_management/lila/lila_common.py,sha256=vzazQR3UzvRxbxdBvRBcCbQ9pw0DUD3iWjUscV-nUvo,8785
+data_management/lila/test_lila_metadata_urls.py,sha256=jDInoM5WD_EoahR_b5yTjrj6pkiitvj_Kz_1U0uSDzE,3966
+detection/process_video.py,sha256=wuMoV-DJde_QlTiNAxsRjlDttiLl2e2BiJuyTQBINIE,26825
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 detection/tf_detector.py,sha256=xOO8kzd-Um2X_sAZyop524LM53nipv5pNx8YueGTJrc,6760
-detection/video_utils.py,sha256=w3Ym9YxHCb-sFHTZyapKT0FaxTH-coILOJLpnguTEN0,19390
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 detection/detector_training/copy_checkpoints.py,sha256=t2c3Q4Pf82tAp_OjSG-veIjRPrX0tJYi-bSQmGL2m4c,1091
 detection/detector_training/model_main_tf2.py,sha256=YwNsZ7hkIFaEuwKU0rHG_VyqiR_0E01BbdlD0Yx4Smo,4936
 md_utils/azure_utils.py,sha256=SVoQNSknYlBcpZeGrH2v3Qgm5kXxBrqM5Sx2L_Lax-I,6243
-md_utils/ct_utils.py,sha256=ywcKF1Rg8E_9XduxmVOSzcW_fgLFnDjI5IILjoZWiuY,10402
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 md_utils/directory_listing.py,sha256=dgxMczSOEH352YXdWRuNo_ujsonRrPJXFeuS7ocpe9k,9615
-md_utils/md_tests.py,sha256=DL8xhTm_np3B_2I8wdneh6f9PhprVdViZsckrrhKLLI,21688
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 md_utils/sas_blob_utils.py,sha256=GpjHn33N2b-XeBAtU3xhGbTIYcBs4YrXHtbQDmlGFvY,16955
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 md_visualization/plot_utils.py,sha256=eppaGgI0k73jhvOCruNrNO-VLH3EEFpFP2la_rZo57E,10712
 md_visualization/render_images_with_thumbnails.py,sha256=XJcL5qxu5pe2LQ4MqnD-O6dM_cPxGGNoqk5U_rZzFUQ,10391
-md_visualization/visualization_utils.py,sha256=EmZFOeYbhv1la53T3eFqJ_QKs7rGgcKkAOGfDcilYfg,34811
-md_visualization/visualize_db.py,sha256=QdPbxEmiPqOTQt8oa32-ax61bTw8N9aDx_pOJn6DF90,18665
-md_visualization/visualize_detector_output.py,sha256=C-UJZhwz1v4EccTm1Z4CldG1NSDCRQ-TaJ__G6ouM88,11595
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 md_visualization/visualize_megadb.py,sha256=ZHFMgQv-zjXwvyT6gEfLe2BzodvBNfQYEh0b6P_59TE,6188
-taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py,sha256=zDercLXW2tdAdLSsyO7mJYzQD93Ie3hRvW8zHPz_N0k,16516
-taxonomy_mapping/map_new_lila_datasets.py,sha256=tPM-uv5nDhCtUaCLV4UtHwN3AS-4GggxLOKfuPVR7iY,4032
-taxonomy_mapping/prepare_lila_taxonomy_release.py,sha256=1bZ7QkRjDLkRapytQsWbLvt21_sgDPQAr5Juj2fvde0,4266
-taxonomy_mapping/preview_lila_taxonomy.py,sha256=OfiQeVUWBesWE52ZuAMsd53Iv_ZOzqqZhS2Emxs-bac,20079
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 taxonomy_mapping/retrieve_sample_image.py,sha256=BySUy69DeGwPiIs9Ws5vIILJCTXeVImE5AVoawOiECM,1992
 taxonomy_mapping/simple_image_download.py,sha256=dXXVhhaR_bI-Elmk4Tmjt2ftdYzHbkuJCTzIMOJfLKs,6874
-taxonomy_mapping/species_lookup.py,sha256=wuyrZdFjIGmMdOoRgbON1AHcGEVZ1LjyOhfPE1jTJjY,27402
-taxonomy_mapping/taxonomy_csv_checker.py,sha256=db6Biubc0vLxIYe8fhkEW-GqYulT6tfPe8HOyDf3ksc,4795
+taxonomy_mapping/species_lookup.py,sha256=oRqaUbiH_xULH7z5mkrtaFhacxlyM8KT-V-c4FnNq4w,28303
+taxonomy_mapping/taxonomy_csv_checker.py,sha256=xmV2SBOfQEuZBMGmXyUzbuNxvd_oXKysXkxU6-IhKJg,4874
 taxonomy_mapping/taxonomy_graph.py,sha256=ZDm2enGanBlm8KXWvCndqmeerOp9LREaetSl-Lxy07s,12361
 taxonomy_mapping/validate_lila_category_mappings.py,sha256=CApYVWIZ8TTJ3vvQTgfjIvWDGHpPo-Zn9jqJFaw3DNw,2314
-megadetector-5.0.6.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
-megadetector-5.0.6.dist-info/METADATA,sha256=srthdZm95WW0GdGlpAqRRBSp3Uinsdwr3iGacKR3PKk,7512
-megadetector-5.0.6.dist-info/WHEEL,sha256=Xo9-1PvkuimrydujYJAjF7pCkriuXBpUPEjma1nZyJ0,92
-megadetector-5.0.6.dist-info/top_level.txt,sha256=-mFGpqnmviVz0Vyr2GxZ_kTo_PBPNoK6h4JtqIMjZGQ,88
-megadetector-5.0.6.dist-info/RECORD,,
+megadetector-5.0.7.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
+megadetector-5.0.7.dist-info/METADATA,sha256=xgK96jYJkxj6kXvCzY3y8HlYb0-Oa44nmfETb2Ba7xI,7513
+megadetector-5.0.7.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+megadetector-5.0.7.dist-info/top_level.txt,sha256=-mFGpqnmviVz0Vyr2GxZ_kTo_PBPNoK6h4JtqIMjZGQ,88
+megadetector-5.0.7.dist-info/RECORD,,

{megadetector-5.0.6.dist-info → megadetector-5.0.7.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.3)
+Generator: bdist_wheel (0.42.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py

@@ -481,4 +481,4 @@ with open(wi_mapping_table_file,'w') as f:
             
     # ...for each dataset    
 
-# ...with open()
+# ...with open()