megadetector 5.0.20__py3-none-any.whl → 5.0.22__py3-none-any.whl

{megadetector-5.0.20.dist-info → megadetector-5.0.22.dist-info}/RECORD

@@ -53,8 +53,8 @@ megadetector/classification/efficientnet/model.py,sha256=qJHWV9-rYKa4E_TIee5N_Oj
 megadetector/classification/efficientnet/utils.py,sha256=dzrDrQQcvINdJFbODmrHQMUaM0RaUbct52zcSprseAg,24693
 megadetector/data_management/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/data_management/camtrap_dp_to_coco.py,sha256=WC5u5nK5BwXpV26_pGy6CppQryJMgsJ9NtDbGIRQqLg,8629
-megadetector/data_management/cct_json_utils.py,sha256=LuNbxU5EAslWanC08PTKzwzCUmesGnbbJhZ1e2dCgnI,15140
-megadetector/data_management/cct_to_md.py,sha256=zgMU2_NjPs5nPGDKf0n1ouJdyiAsgR4Q9wj-Q9Y-c88,5070
+megadetector/data_management/cct_json_utils.py,sha256=d1jDmL5wioypt4Ny6BRBNg6iUBaqpq2E2xf162n6zGo,19520
+megadetector/data_management/cct_to_md.py,sha256=Q6ika31wwHLdRcdH_0QFs2o5elu44rhF4UEJ-u3edpk,5441
 megadetector/data_management/cct_to_wi.py,sha256=hnFErIlBDmhZtBv21kDW14MSdHlUjwtCGn2vnG-cN34,9771
 megadetector/data_management/coco_to_labelme.py,sha256=Uql6f1TaMmKIZClCcqUB1bPxokdXgyAKsQm5pk5foKk,8986
 megadetector/data_management/coco_to_yolo.py,sha256=rTDOh3XdoOoo7HCSH7obT3xpQgiSykf71ba8uOXfnxc,28121
@@ -63,20 +63,20 @@ megadetector/data_management/get_image_sizes.py,sha256=2b6arj4gvoN-9f61lC3t1zAFF
 megadetector/data_management/labelme_to_coco.py,sha256=8RUXALXbLpmS7UYUet4BAe9JVSDW7ojwDDpxYs072ZI,21231
 megadetector/data_management/labelme_to_yolo.py,sha256=dRePSOwU_jiCr0EakDQCz1Ct-ZHDxDglUk4HbM1LfWc,10034
 megadetector/data_management/ocr_tools.py,sha256=T9ClY3B-blnK3-UF1vpVdageknYsykm_6FAfqn0kliU,32529
-megadetector/data_management/read_exif.py,sha256=iW3oQz4vKHnSe1nY38Pp-bXlQ5EUO49ttnhvO-0Pcqk,30508
+megadetector/data_management/read_exif.py,sha256=TIPf1OHFhuDq7M2H9MxcEEvN17G0dpJTriRTtiqIvxA,30474
 megadetector/data_management/remap_coco_categories.py,sha256=xXWv0QhTjkUfc9RKtAZanK77HMSq_21mFg_34KFD6hw,2903
 megadetector/data_management/remove_exif.py,sha256=vIWnJfw1i9JgyQKUDGEzzqkHro4ndykIPFWhtkm6RAU,2502
-megadetector/data_management/rename_images.py,sha256=AG3YIxXEYdGmK4G-rv0_XZIylPqOZpS6gfEkydF6oDg,6918
+megadetector/data_management/rename_images.py,sha256=ikIj_b5DY1rgaAn9n_IbwsnugAolczFNivh4xzfLPy8,6915
 megadetector/data_management/resize_coco_dataset.py,sha256=AaiV7efIcNnqsXsnQckmHq2G__7ZQHBV_jN6rhZfMjo,6810
 megadetector/data_management/wi_download_csv_to_coco.py,sha256=ilnJZhNZK-FGUR-AfUSWjIDUk9Gytgxw7IOK_N8WKLE,8350
-megadetector/data_management/yolo_output_to_md_output.py,sha256=1RUJSWiVa7CVVQ_CresOVXAD3Eb7oHjdgPg7fTX_Vwg,17563
+megadetector/data_management/yolo_output_to_md_output.py,sha256=VuU9G6QOeAXOa7JsuHjSYhE3Y7MjEd2bPtceugOOILY,17920
 megadetector/data_management/yolo_to_coco.py,sha256=TzAagQ2ATbB_tn1oZxrHCWsrFGO_OhfZmi-3X45WdDU,26180
 megadetector/data_management/annotations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/data_management/annotations/annotation_constants.py,sha256=1597MpAr_HdidIHoDFj4RgUO3K5e2Xm2bGafGeonR2k,953
 megadetector/data_management/databases/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/data_management/databases/add_width_and_height_to_db.py,sha256=X7A_iniGwlkhZ0jUNm564GT_mH2_RJGLD0aGP9cBhY0,749
 megadetector/data_management/databases/combine_coco_camera_traps_files.py,sha256=oeELrMgxhsJ6aNBxPQyu4CmsdtYnzS5GKZEV8U-XUdk,6693
-megadetector/data_management/databases/integrity_check_json_db.py,sha256=A8AAlpfAbbthUH3ZOQrvRjzliMl2RS8g764Nk7Ypuqk,17109
+megadetector/data_management/databases/integrity_check_json_db.py,sha256=h1jPDx9EuWLN1mMzedLMhDuLGqAcNA4rvFqjXE0_1vg,17602
 megadetector/data_management/databases/subset_json_db.py,sha256=JK71qSUpUZe7cJquyt2xEzirDoZq1Lrr2X0cgtHKBpA,3219
 megadetector/data_management/importers/add_nacti_sizes.py,sha256=jjGTpd36g5w7nLIeOatXRwu1Uti2GiGgP3-61QSg8oA,1156
 megadetector/data_management/importers/add_timestamps_to_icct.py,sha256=5l1TkWq3X4Mxed7zlZ07U1RQcjbzBnwcoftNiaruigM,2364
@@ -101,11 +101,11 @@ megadetector/data_management/importers/mcgill_to_json.py,sha256=dfSxU1hHimyGT6Zt
 megadetector/data_management/importers/missouri_to_json.py,sha256=C0ia3eCEZujVUKE2gmQc6ScsK8kXWM7m0ibeKgHfXNo,14848
 megadetector/data_management/importers/nacti_fieldname_adjustments.py,sha256=1oDCSuFXhc2b7JPIzkSb3DkusacdAjMM2GQZnhfFQCg,2027
 megadetector/data_management/importers/noaa_seals_2019.py,sha256=oar378j46fm27ygcbjrgN1rbq6h1SC8utAdSPNqiQt4,5152
-megadetector/data_management/importers/osu-small-animals-to-json.py,sha256=Xr6vZ_WMNZQoTQw4qoYJqkYwBwqYf3FywCLX4hKFFPs,10096
+megadetector/data_management/importers/osu-small-animals-to-json.py,sha256=wBbnY8kqZrzRiujrNK750DB3mq14EyIz4Zlx9JHRTkw,10096
 megadetector/data_management/importers/pc_to_json.py,sha256=VmVvY5Fr8jMLmRkDZI9CuyLvrNuLrspJA9Q8Auxbw1A,10762
 megadetector/data_management/importers/plot_wni_giraffes.py,sha256=KdEjbItDOXbXj0fr0celfMp7z31Rr3S29SLWBCMY-4M,3772
-megadetector/data_management/importers/prepare-noaa-fish-data-for-lila.py,sha256=Pq5tSKWTIGEAGxBiGaO5Tz0QvKZ6QgJTIQ3raDAhjkk,12435
 megadetector/data_management/importers/prepare_zsl_imerit.py,sha256=ohrUaTXIGg1M4_liptWaPa-4g3yNvc1E4o_knfHSE-8,3775
+megadetector/data_management/importers/raic_csv_to_md_results.py,sha256=37ycjxUcLPannopea5shCIpFnsUcROOx_0BpuQ0Pu6Q,15921
 megadetector/data_management/importers/rspb_to_json.py,sha256=y03v1d1un9mI3HZRCZinMB1pEkNvTb70S7Qkr3F76qg,9841
 megadetector/data_management/importers/save_the_elephants_survey_A.py,sha256=lugw8m5Nh2Fhs-FYo9L0mDL3_29nAweLxEul6GekdkI,10669
 megadetector/data_management/importers/save_the_elephants_survey_B.py,sha256=SWClXENsIePwifP8eJeRsj3kh3Bztl6Kzc_BdqNZvFw,11172
@@ -117,7 +117,7 @@ megadetector/data_management/importers/ubc_to_json.py,sha256=UhZ2P6WlLioLEPkfo7N
 megadetector/data_management/importers/umn_to_json.py,sha256=wCVgvz1x7gL67s1Avyx0NwBvwSjhNMcAwOnDHR0O5G0,16185
 megadetector/data_management/importers/wellington_to_json.py,sha256=TQivUZSgD-PeudGRAsgmsYznxDVaOPbbV4V9scnmZFg,7688
 megadetector/data_management/importers/wi_to_json.py,sha256=tdscGc8SQdRbtjsUVQyCBcxR7_TjPNb_A6OLLUhOe9I,13663
-megadetector/data_management/importers/zamba_results_to_md_results.py,sha256=L0E_zwPyN8Lvn1ukOw95TQ-APM7fBki_2_eKJhC3HkE,5381
+megadetector/data_management/importers/zamba_results_to_md_results.py,sha256=DD13mDXAscQQekNSoTOFYROBfNdrLPVJnb_B32esesI,5300
 megadetector/data_management/importers/eMammal/copy_and_unzip_emammal.py,sha256=CoP8rZOuLDIIL5jajB4WLnMhum19Ol-UT4W25FiF3zE,6085
 megadetector/data_management/importers/eMammal/eMammal_helpers.py,sha256=Sv6PBAMDdlgwiek6Q3R6Rjio2RjtA-JpfgBr_Fmr9kA,6838
 megadetector/data_management/importers/eMammal/make_eMammal_json.py,sha256=6C_-6Qk-Xhz_87DEPHA-txw90AvXrybJy1PbQXQbqwo,6987
@@ -127,51 +127,52 @@ megadetector/data_management/lila/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeR
 megadetector/data_management/lila/add_locations_to_island_camera_traps.py,sha256=OQ-wn2YX0V96aw1EJxUAMYRnkv9G-dvHBU8ULQF-Tus,2583
 megadetector/data_management/lila/add_locations_to_nacti.py,sha256=S4ty7lARf2O13_GWTX1pFYyixPCNecqUj6jpO3hOV2w,4849
 megadetector/data_management/lila/create_lila_blank_set.py,sha256=SBwpM0-pycW37TESXaJlc2oo_qIxYJoOzHhmmnBHWWI,19826
-megadetector/data_management/lila/create_lila_test_set.py,sha256=DjivKgsFJlO1IHezXrwAGpiCAhLVmvPnv2nJYpv1ABU,4835
+megadetector/data_management/lila/create_lila_test_set.py,sha256=nnjaxbK-5uIP7hUT8rqlnWepKXauGEQsRS5-H8rOVrA,5184
 megadetector/data_management/lila/create_links_to_md_results_files.py,sha256=MvaPBAgdwoxaNrRaKZ8mGaOCky1BYXlrT08tPG9BrpM,3803
-megadetector/data_management/lila/download_lila_subset.py,sha256=rh09kphSCVPlUGuYY-CkSyd8dy0pBUdth6uHkZ84sEo,5345
-megadetector/data_management/lila/generate_lila_per_image_labels.py,sha256=WRfqYW0cyan_-2OHy4YudoUC8ojjslfBHS_iA8JLaPo,18150
+megadetector/data_management/lila/download_lila_subset.py,sha256=0tzz43-uBA6fEPoxH7xy1yDXmwgwYcb5Wm11F6zZQtw,5477
+megadetector/data_management/lila/generate_lila_per_image_labels.py,sha256=JZH_u5ckYODAO4yHWQ_dkI-Sq5hgj5rO82iisG7e-Lg,18239
 megadetector/data_management/lila/get_lila_annotation_counts.py,sha256=DWysGF5y7E_RYEoAyvR5RUPTOZVbauTxfAwFcIbn5sc,5622
 megadetector/data_management/lila/get_lila_image_counts.py,sha256=UxXS5RDnSA_WbxE92qN-N7p-qR-jbyTsTZ7duLo06us,3620
 megadetector/data_management/lila/lila_common.py,sha256=74ecaGItH4AtCYeY1WSejLIcylhJPCJ1y97gYYL34PM,11080
-megadetector/data_management/lila/test_lila_metadata_urls.py,sha256=iMpoz9Y6fcVz9whTJpo2f6EuTCiptUix2UV6khyKn9I,4688
+megadetector/data_management/lila/test_lila_metadata_urls.py,sha256=qKyZAb17Va9rfLdNwiOBER02yhUwquOSR9VURtxzugY,4784
 megadetector/detection/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-megadetector/detection/process_video.py,sha256=4Fwt9utPjctSUMe8YnJzgoEsu_WHehe7MKIR3s81hC8,53242
-megadetector/detection/pytorch_detector.py,sha256=StOnaspDBkMeePiTyq5ZEcFUDBEddq36nigHXbF-zAQ,14029
-megadetector/detection/run_detector.py,sha256=r_RKrrz6ppKe9cLvuN9Q3OUhv032wC7uESQ_vxJZ1iw,32029
+megadetector/detection/process_video.py,sha256=EizrKUuLZdtJdr9DE5oeqwk6Kst1RdvFxlwBneOEnU8,53569
+megadetector/detection/pytorch_detector.py,sha256=Tm1o03PhI7oVBZ1_BINBKTWVHp2EdT42vF7h0gI_hJ0,14566
+megadetector/detection/run_detector.py,sha256=fq5WLOAGJ0mSGfVL4-uLj2VUH-Tp1h1-zo_MW27MW4g,32077
 megadetector/detection/run_detector_batch.py,sha256=a98fzorcGtQaOYa5AGW2XPoJpbHeJWO5prqwzxVoPaI,62055
-megadetector/detection/run_inference_with_yolov5_val.py,sha256=2miU2QZG_zp3rEPyoKf2XozuMpW6zAW4bAoyg6hSe-k,48691
+megadetector/detection/run_inference_with_yolov5_val.py,sha256=wMDkSm24L8-XIFb1Mi3jpr4mX5H0h39uYWJYsgPd8Q8,53436
 megadetector/detection/run_tiled_inference.py,sha256=vw0713eNuMiEOjHfweQl58zPHNxPOMdFWZ8bTDLhlMY,37883
 megadetector/detection/tf_detector.py,sha256=5V94a0gR6WmGPacKm59hl1eYEZI8cG04frF4EvHrmzU,8285
-megadetector/detection/video_utils.py,sha256=1u5DKMcHikKPi0OYmJUCyPdjEomGEXfayIkVD_VX3_0,42622
+megadetector/detection/video_utils.py,sha256=XqaaF8YQX-goSzHEoHasmkuNF7DrbFDil0Xd9KjHb5Q,43821
 megadetector/detection/detector_training/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/detection/detector_training/model_main_tf2.py,sha256=YwNsZ7hkIFaEuwKU0rHG_VyqiR_0E01BbdlD0Yx4Smo,4936
 megadetector/postprocessing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/postprocessing/add_max_conf.py,sha256=qTE1_0RwGAy6jLDkHrIo2pS84yNbUV11s4IZuAYGdIU,1514
 megadetector/postprocessing/categorize_detections_by_size.py,sha256=YdapcvjA6Dz2dPa2AFf1Dwyl7C-OmmP4G4OjhTOuaF4,5797
-megadetector/postprocessing/classification_postprocessing.py,sha256=8uvlA0Gc8nakM5IE5Pud7WZfmF5kEhcYvxgQXcI9kl0,30429
-megadetector/postprocessing/combine_api_outputs.py,sha256=xCJHEKca8YW-mupEr0yNNwwSBeL9NvcV1w3VtEzN4lk,8535
-megadetector/postprocessing/compare_batch_results.py,sha256=7O5c6-JsIDpuIGobks_R9j8MPuiZQRnEtNnJQsJqICM,38918
+megadetector/postprocessing/classification_postprocessing.py,sha256=SJah7xrVN06W_jmKdEF_-ykcaKE6fDTGHFhOz4rYi8g,30430
+megadetector/postprocessing/combine_api_outputs.py,sha256=zBGpSLbcQUiLYxgJrjZXjBwc2dOwAytV30UFnroP2Fg,8536
+megadetector/postprocessing/compare_batch_results.py,sha256=DJk0mkhgHM9AVLDLCrAhHggfW3IimlziU80SNN0xi84,75179
 megadetector/postprocessing/convert_output_format.py,sha256=HwThfK76UPEAGa3KQbJ_tMKIrUvJ3JhKoQVWJt9dPBk,15447
+megadetector/postprocessing/detector_calibration.py,sha256=rzAsiUJhw8Y4RxSK1SMnsdjI3MYkFA9NP5vJ7CNsX0I,21820
 megadetector/postprocessing/load_api_results.py,sha256=FqcaiPMuqTojZOV3Jn14pJESpuwjWGbZtcvJuVXUaDM,6861
-megadetector/postprocessing/md_to_coco.py,sha256=x3sUnOLd2lVfdG2zRN7k-oUvx6rvRD7DWmWJymPc108,12359
+megadetector/postprocessing/md_to_coco.py,sha256=wleD9Fq2zvQ5ubwfV3KUsDmgpiLnBXh5XvjjYk7YIH8,15971
 megadetector/postprocessing/md_to_labelme.py,sha256=hejMKVxaz_xdtsGDPTQkeWuis7gzT-VOrL2Qf8ym1x0,11703
 megadetector/postprocessing/merge_detections.py,sha256=AEMgMivhph1vph_t_Qv85d9iHynT2nvq7otN4KGrDLU,17776
-megadetector/postprocessing/postprocess_batch_results.py,sha256=xa1FCQnzo1B6Inq8EWqS_In5xDu3qNzES_YdZ0INKr0,78978
+megadetector/postprocessing/postprocess_batch_results.py,sha256=Ln1fCqdc2_sFpxeKN_DuoyuaOd8okABMtiYbcxi33AU,79878
 megadetector/postprocessing/remap_detection_categories.py,sha256=d9IYTa0i_KbbrarJc_mczABmdwypscl5-KpK8Hx_z8o,6640
 megadetector/postprocessing/render_detection_confusion_matrix.py,sha256=_wsk4W0PbNiqmFuHy-EA0Z07B1tQLMsdCTPatnHAdZw,27382
 megadetector/postprocessing/separate_detections_into_folders.py,sha256=k42gxnL8hbBiV0e2T-jmFrhxzIxnhi57Nx9cDSSL5s0,31218
 megadetector/postprocessing/subset_json_detector_output.py,sha256=PDgb6cnsFm9d4E7_sMVIguLIU7s79uFQa2CRCxAO0F4,27064
 megadetector/postprocessing/top_folders_to_bottom.py,sha256=Dqk-KZXiRlIYlmLZmk6aUapmaaLJUKOf8wK1kxt9W6A,6283
-megadetector/postprocessing/validate_batch_results.py,sha256=uFS-Iag7tZYMWJeDuIYwDhEdc8F_5BGKhV4V7y3SGVw,5551
+megadetector/postprocessing/validate_batch_results.py,sha256=JGkefSpiXy1SEfJ6cjW1Wg7ABsIcz4VMojTqdpY6PpE,11224
 megadetector/postprocessing/repeat_detection_elimination/find_repeat_detections.py,sha256=e4Y9CyMyd-bLN3il8tu76vI0nVYHZlhZr6vcL0J4zQ0,9832
 megadetector/postprocessing/repeat_detection_elimination/remove_repeat_detections.py,sha256=tARPxuY0OyQgpKU2XqiQPko3f-hHnWuISB8ZlZgXwxI,2819
 megadetector/postprocessing/repeat_detection_elimination/repeat_detections_core.py,sha256=vEmWLSSv0_rxDwhjz_S9YaKZ_LM2tADTz2JYb_zUCnc,67923
 megadetector/taxonomy_mapping/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py,sha256=6D_YHTeWTs6O8S9ABog2t9-wfQSh9dW2k9XTqXUZKfo,17927
-megadetector/taxonomy_mapping/map_new_lila_datasets.py,sha256=g--BMaLkFvkXyBs48od1fEX0T9BgpxlJicGeSHKeNUU,4150
-megadetector/taxonomy_mapping/prepare_lila_taxonomy_release.py,sha256=-BpstFpmO_HcyEKaQt8bGsX5bcdPSPpR7S5ZQyhXwwo,4800
-megadetector/taxonomy_mapping/preview_lila_taxonomy.py,sha256=SpZzL5Ibsz34bc6gPQ2vrgD8EHBmHxrr7b4PFAT9_IE,19580
+megadetector/taxonomy_mapping/map_new_lila_datasets.py,sha256=ELv_3KYUQBWDQH1ikhXenyPm-tYmKn8fARbNECqLgJs,4242
+megadetector/taxonomy_mapping/prepare_lila_taxonomy_release.py,sha256=kemgxFTriz92Z4fJL0FSimmhhLtC3nBZuZ-Cy9cl1kM,4812
+megadetector/taxonomy_mapping/preview_lila_taxonomy.py,sha256=eL5nax3zEtNtfX5urk55A4iR_5S-oH0Bwn_qwBMl3tA,19612
 megadetector/taxonomy_mapping/retrieve_sample_image.py,sha256=4cfWsLRwS_EwAmQr2p5tA_W6glBK71tSjPfaHxUZQWs,1979
 megadetector/taxonomy_mapping/simple_image_download.py,sha256=wLhyMSocX_JhDGA6yLbEfpysz8MMI8YFJWaxyA-GZ9c,6932
 megadetector/taxonomy_mapping/species_lookup.py,sha256=HZ7fyhap9CNdhdmq-id8dMnIa9TPMA3557rsamAkWkU,28329
@@ -180,25 +181,25 @@ megadetector/taxonomy_mapping/taxonomy_graph.py,sha256=ayrTFseVaIMbtMXhnjWCkZdxI
 megadetector/taxonomy_mapping/validate_lila_category_mappings.py,sha256=1qyZr23bvZSVUYLQnO1XAtIZ4jdpARA5dxt8euKVyOA,2527
 megadetector/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/utils/azure_utils.py,sha256=0BdnkG2hW-X0yFpsJqmBhOd2wysz_LvhuyImPJMVPJs,6271
-megadetector/utils/ct_utils.py,sha256=Ecac5CLEIrEi89JFuoqdOMxiOdmbno106a1MT2SVdJY,19956
+megadetector/utils/ct_utils.py,sha256=Sv4vUwDou9-fr2hRZu2EmOhj4EBZwrGEbV0QEYQs53o,21526
 megadetector/utils/directory_listing.py,sha256=r4rg2xA4O9ZVxVtzPZzXIXa0DOEukAJMTTNcNSiQcuM,9668
-megadetector/utils/md_tests.py,sha256=6aufzNsFi_7cQGuMd4BLfjEosO3-iLAqmP5_PkE_SOs,61001
-megadetector/utils/path_utils.py,sha256=o68jfPDaLj3NizipVCQEnmB5GfPHpMOLUmQWamYM4w0,37165
-megadetector/utils/process_utils.py,sha256=2SdFVxqob-YUW2BTjUEavNuRH3jA4V05fbKMtrVSd3c,5635
+megadetector/utils/md_tests.py,sha256=gQXUlcXbCgtAafqeXAmSsueUneEEMqEVCoWUH4c_k4s,61190
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 megadetector/utils/sas_blob_utils.py,sha256=k76EcMmJc_otrEHcfV2fxAC6fNhxU88FxM3ddSYrsKU,16917
 megadetector/utils/split_locations_into_train_val.py,sha256=jvaDu1xKB51L3Xq2nXQo0XtXRjNRf8RglBApl1g6gHo,10101
 megadetector/utils/string_utils.py,sha256=ZQapJodzvTDyQhjZgMoMl3-9bqnKAUlORpws8Db9AkA,2050
 megadetector/utils/torch_test.py,sha256=aEYE-1vGt5PujD0bHAVRTJiLrKFlGWpS8zeYhqEYZLY,853
 megadetector/utils/url_utils.py,sha256=yybWwJ-vl2A6Fci66i-xt_dl3Uqh72Ylnb8XOT2Grog,14835
-megadetector/utils/write_html_image_list.py,sha256=apzoWkgZWG-ybCT4k92PlS4-guN_sNBSMMMbj7Cfm1k,8638
+megadetector/utils/write_html_image_list.py,sha256=MhVAAv6th9Q2fldtE8hp_hHWFgJ_pcKJEk3YiK6dWY4,9415
 megadetector/visualization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 megadetector/visualization/plot_utils.py,sha256=lOfU3uPrcuHZagV_1SN8erT8PujIepocgw6KZ17Ej6c,10671
 megadetector/visualization/render_images_with_thumbnails.py,sha256=kgJYW8BsqRO4C7T3sqItdBuSkZ64I1vOtIWAsVG4XBI,10589
-megadetector/visualization/visualization_utils.py,sha256=J53VsI8aQmzzBBeu-msm8c-qC6pm_HCMkMKYvnylqjo,63083
-megadetector/visualization/visualize_db.py,sha256=x9jScwG-3V-mZGy5cB1s85KWbiAIfvgVUcLqUplHxGA,22110
+megadetector/visualization/visualization_utils.py,sha256=KsQKxANzCqLoLrI5b-5U5LEGhJIKH0YNNJQOym9DE3M,72779
+megadetector/visualization/visualize_db.py,sha256=tswoWqyAo_S5RW76yvPEEWkUVEzn2NJrX1lfDl2jqY4,24392
 megadetector/visualization/visualize_detector_output.py,sha256=LY8QgDWpWlXVLZJUskvT29CdkNvIlEsFTk4DC_lS6pk,17052
-megadetector-5.0.20.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
-megadetector-5.0.20.dist-info/METADATA,sha256=mpalvNnG04pMLXU6BD8IZ7YTumaa8uS9KPOFdS87KGk,7468
-megadetector-5.0.20.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
-megadetector-5.0.20.dist-info/top_level.txt,sha256=wf9DXa8EwiOSZ4G5IPjakSxBPxTDjhYYnqWRfR-zS4M,13
-megadetector-5.0.20.dist-info/RECORD,,
+megadetector-5.0.22.dist-info/LICENSE,sha256=RMa3qq-7Cyk7DdtqRj_bP1oInGFgjyHn9-PZ3PcrqIs,1100
+megadetector-5.0.22.dist-info/METADATA,sha256=f8OKhVhNxpXvY_i9sshe9Og8Z7pPA4m5e_MOmIzp-Rs,7632
+megadetector-5.0.22.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+megadetector-5.0.22.dist-info/top_level.txt,sha256=wf9DXa8EwiOSZ4G5IPjakSxBPxTDjhYYnqWRfR-zS4M,13
+megadetector-5.0.22.dist-info/RECORD,,

{megadetector-5.0.20.dist-info → megadetector-5.0.22.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.1.0)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

megadetector/data_management/importers/prepare-noaa-fish-data-for-lila.py

@@ -1,359 +0,0 @@
-"""
-
- Prepare a LILA-ready .json file for the NOAA Puget Sound Nearshore Fish dataset.
-
-"""
-
-#%% Constants and imports
-
-import os
-import json
-import uuid
-import pandas as pd
-
-from megadetector.utils.path_utils import open_file
-
-base_folder = r'G:\temp\noaa'
-output_json_fn = os.path.join(base_folder,'noaa_estuary_fish.json')
-edited_image_folders = ['edited_clip_2017','edited_clip_2018']
-jpeg_image_folder = 'JPEGImages'
-metadata_file = 'MasterDataForMicrosoft.xlsx'
-
-
-#%% Enumerate files
-
-edited_image_files = []
-
-# edited_image_folder = edited_image_folders[0]
-for edited_image_folder in edited_image_folders:
-    folder_path = os.path.join(base_folder,edited_image_folder)
-    image_files = os.listdir(folder_path)
-    assert all([fn.endswith('.jpg') for fn in image_files])
-    edited_image_files.extend([os.path.join(folder_path,fn) for fn in image_files])
-    
-jpeg_image_folder_files = os.listdir(os.path.join(base_folder,jpeg_image_folder))
-assert all([fn.endswith('.jpg') for fn in jpeg_image_folder_files])
-
-relative_edited_image_files_set = set()
-
-# fn = edited_image_files[0]
-for fn in edited_image_files:
-    bn = os.path.basename(fn)
-    assert bn not in relative_edited_image_files_set
-    relative_edited_image_files_set.add(bn)
-    
-jpeg_image_folder_files_set = set(jpeg_image_folder_files)
-
-assert len(jpeg_image_folder_files_set) == len(relative_edited_image_files_set)
-
-assert jpeg_image_folder_files_set == relative_edited_image_files_set
-
-
-#%% Read metadata and capture location information
-
-df = pd.read_excel(os.path.join(base_folder,metadata_file))
-
-print('Read {} rows from metadata file'.format(len(df)))
-
-id_string_to_site = {}
-
-# i_row = 0; row = df.iloc[i_row]
-for i_row,row in df.iterrows():
-    
-    assert row['sd'].lower().startswith('sd')
-    assert isinstance(row['id'],int) and row['id'] > 0 and row['id'] < 10000
-    date_string = row['date']
-    date_tokens = date_string.split('_')
-    
-    # Sometimes '2017' was just '17' in the date column
-    if len(date_tokens[2]) != 4:
-        assert len(date_tokens[2]) == 2
-        date_tokens[2] = '20' + date_tokens[2]
-        date_string = '_'.join(date_tokens)
-    else:
-        assert date_tokens[2].startswith('201')
-        
-    id_string = row['sd'].upper() + '_' + str(row['id']) + '_' + date_string
-    id_string_to_site[id_string] = row['site']
-    
-print('Found {} unique locations'.format(len(pd.unique(df['site']))))
-
-
-#%% Read the .json files and build output dictionaries
-
-json_files = [fn for fn in os.listdir(base_folder) if (fn.endswith('.json') and (fn != os.path.basename(output_json_fn)))]
-json_files = [os.path.join(base_folder,fn) for fn in json_files]
-
-fn_to_image = {}
-annotations = []
-
-CATEGORY_ID_EMPTY = 0
-CATEGORY_ID_FISH = 1
-
-categories = [{'id':CATEGORY_ID_EMPTY,'name':'empty'},{'id':CATEGORY_ID_FISH,'name':'animal'}]
-
-empty_images = set()
-non_empty_images = set()
-
-n_matched_locations = 0
-images_with_unmatched_locations = []
-
-import random
-random.seed(1)
-
-site_to_location_id = {}
-
-# json_fn = json_files[0]
-for json_fn in json_files:
-    
-    # if 'partial' in json_fn:
-    #    continue
-    
-    with open(json_fn,'r') as f:
-        
-        lines = f.readlines()
-        
-        # line = lines[0]
-        for line in lines:
-            
-            d = json.loads(line)
-            image_fn = d['image']
-        
-            # if image_fn == 'SD1_238_6_26_17_16_76.73.jpg':
-            #    asdfad
-                
-            # SD29_079_5_14_2018_17_52.85.jpg
-            
-            tokens = image_fn.split('_')
-            assert len(tokens) == 7
-            assert tokens[0].startswith('SD')
-            
-            # Re-write two-digit years as four-digit years
-            if len(tokens[4]) != 4:
-                assert len(tokens[4]) == 2
-                tokens[4] = '20' + tokens[4]
-            else:
-                assert tokens[4].startswith('201')                
-            
-            # Sometimes the year was written with two digits instead of 4
-            # assert len(tokens[4]) == 4 and tokens[4].startswith('20')
-            
-            while tokens[1].startswith('0'):
-                tokens[1] = tokens[1][1:]
-            assert not tokens[1].startswith('0')
-            assert len(tokens[1]) > 0
-
-            id_string = '_'.join(tokens[0:5])
-            
-            location_id = 'unknown'
-                        
-            if id_string in id_string_to_site:
-                
-                site_id = id_string_to_site[id_string]
-                
-                # Have we seen this location already?
-                if site_id in site_to_location_id:
-                    location_id = site_to_location_id[site_id]
-                else:
-                    location_id = 'loc_' + str(uuid.uuid1())
-                    site_to_location_id[site_id] = location_id
-                    print('Adding new location ID {} for site {}'.format(
-                        location_id,site_id))                    
-                n_matched_locations += 1
-                
-            else:
-                raise ValueError('Could not match location ID')
-                images_with_unmatched_locations.append(image_fn)
-            
-            assert image_fn in jpeg_image_folder_files_set
-            assert d['type'] == 'image/jpg'
-            input_ann = d['annotations']
-            assert len(input_ann) == 1 and len(input_ann.keys()) == 1 and 'object' in input_ann
-            input_ann = input_ann['object']
-            assert input_ann['metainfo']['image']['height'] == 1080
-            assert input_ann['metainfo']['image']['width'] == 1920
-        
-            im = {}
-                        
-            img_h = input_ann['metainfo']['image']['height']
-            img_w = input_ann['metainfo']['image']['width']
-            
-            im['width'] = img_w
-            im['height'] = img_h
-            im['file_name'] = image_fn
-            
-            if image_fn in fn_to_image:
-                assert fn_to_image[image_fn]['file_name'] == image_fn
-                assert fn_to_image[image_fn]['width'] == img_w
-                assert fn_to_image[image_fn]['height'] == img_h                
-                im = fn_to_image[image_fn]
-            else:
-                fn_to_image[image_fn] = im
-                im['location'] = location_id
-                im['id'] = image_fn # str(uuid.uuid1())                
-            
-            # Not a typo, it's actually "formateddata"
-            formatted_data = input_ann['formateddata']
-            if len(formatted_data) == 0:
-                
-                # An image shouldn't be annotated as both empty and non-empty
-                assert image_fn not in non_empty_images
-                empty_images.add(image_fn)                
-                ann = {}
-                ann['id'] = str(uuid.uuid1())
-                ann['image_id'] = im['id']
-                ann['category_id'] = CATEGORY_ID_EMPTY
-                ann['sequence_level_annotation'] = False                
-                annotations.append(ann)
-                
-            else:
-                
-                # An image shouldn't be annotated as both empty and non-empty
-                assert image_fn not in empty_images
-                non_empty_images.add(image_fn)                
-                
-                n_boxes = len(formatted_data)
-                
-                # box = formatteddata[0]
-                for box in formatted_data:
-                                        
-                    attributes = box['attribute']
-                    assert len(attributes) == 2 and 'occluded' in attributes and 'truncated' in attributes                    
-                    coordinates = box['coordinates']
-                    assert box['object_type'] == 'bbox'
-                    assert box['class']['type'] == 'Fish'
-                    assert len(coordinates) == 4
-                    for coord in coordinates:
-                        assert len(coord) == 2 and 'x' in coord and 'y' in coord
-                    assert coordinates[0]['y'] == coordinates[1]['y']
-                    assert coordinates[2]['y'] == coordinates[3]['y']
-                    assert coordinates[0]['x'] == coordinates[3]['x']
-                    assert coordinates[1]['x'] == coordinates[2]['x']
-                          
-                    assert coordinates[0]['x'] < coordinates[1]['x']
-                    assert coordinates[0]['y'] < coordinates[3]['y']
-                    
-                    if False:
-                        x = coordinates[0]['x'] / img_w
-                        y = coordinates[0]['y'] / img_h
-                        box_w = (coordinates[1]['x'] - coordinates[0]['x']) / img_w
-                        box_h = (coordinates[3]['y'] - coordinates[0]['y']) / img_h
-                    else:
-                        x = coordinates[0]['x']
-                        y = coordinates[0]['y']
-                        box_w = (coordinates[1]['x'] - coordinates[0]['x'])
-                        box_h = (coordinates[3]['y'] - coordinates[0]['y'])
-                        
-                    bbox = [x,y,box_w,box_h]
-                    
-                    ann = {}
-                    ann['id'] = str(uuid.uuid1())
-                    ann['image_id'] = im['id']
-                    ann['category_id'] = CATEGORY_ID_FISH
-                    ann['sequence_level_annotation'] = False
-                    ann['bbox'] = bbox
-                    
-                    annotations.append(ann)
-                                        
-                    # open_file(os.path.join(base_folder,jpeg_image_folder,image_fn))
-                    
-                # ...for each box
-                
-            # ...if there are boxes on this image
-        
-        # ...for each line
-        
-    # ...with open()
-    
-# ...for each json file
-        
-print('Found annotations for {} images (of {})'.format(len(fn_to_image),
-                                                       len(jpeg_image_folder_files_set)))
-                
-
-print('Matched locations for {} images (failed to match {})'.format(
-    n_matched_locations,len(images_with_unmatched_locations)))
-
-images = list(fn_to_image.values())
-
-
-#%% Prepare the output .json
-
-info = {}
-info['version'] = '2022.07.31.00'
-info['description'] = 'NOAA Estuary Fish 2022'
-info['year'] = 2022
-info['contributor'] = 'NOAA Fisheries'
-    
-d = {}
-d['info'] = info
-d['annotations'] = annotations
-d['images'] = images
-d['categories'] = categories
-
-with open(output_json_fn,'w') as f:
-    json.dump(d,f,indent=1)
-
-
-#%% Check DB integrity
-
-from megadetector.data_management.databases import integrity_check_json_db
-
-options = integrity_check_json_db.IntegrityCheckOptions()
-options.baseDir = os.path.join(base_folder,jpeg_image_folder)
-options.bCheckImageSizes = False
-options.bCheckImageExistence = True
-options.bFindUnusedImages = True
-
-_, _, _ = integrity_check_json_db.integrity_check_json_db(output_json_fn, options)
-
-
-#%% Print unique locations
-
-from collections import defaultdict
-location_to_count = defaultdict(int)
-for im in d['images']:
-    location_to_count[im['location']] += 1
-for loc in location_to_count.keys():
-    print(loc + ': ' + str(location_to_count[loc]))
-
-print('{} unique locations'.format(len(location_to_count)))
-assert 'unknown' not in location_to_count.keys()
-
-# SD12_202_6_23_2017_1_31.85.jpg
-
-
-#%% Preview some images
-
-from megadetector.visualization import visualize_db
-
-viz_options = visualize_db.DbVizOptions()
-viz_options.num_to_visualize = 10000
-viz_options.trim_to_images_with_bboxes = False
-viz_options.add_search_links = False
-viz_options.sort_by_filename = False
-viz_options.parallelize_rendering = True
-viz_options.include_filename_links = True
-
-html_output_file, _ = visualize_db.visualize_db(db_path=output_json_fn,
-                                                output_dir=os.path.join(base_folder,'preview'),
-                                                image_base_dir=os.path.join(base_folder,jpeg_image_folder),
-                                                options=viz_options)
-open_file(html_output_file)
-
-
-#%% Statistics
-
-print('Empty: {}'.format(len(empty_images)))
-print('Non-empty: {}'.format(len(non_empty_images)))
-
-images_with_no_boxes = 0
-n_boxes = 0
-for ann in annotations:
-    if 'bbox' not in ann:
-        images_with_no_boxes += 1
-    else:
-        assert len(bbox) == 4
-        n_boxes += 1
-
-print('N boxes: {}'.format(n_boxes))