megadetector 10.0.10__py3-none-any.whl → 10.0.11__py3-none-any.whl

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  1. megadetector/data_management/animl_to_md.py +5 -2
  2. megadetector/data_management/cct_json_utils.py +4 -2
  3. megadetector/data_management/cct_to_md.py +5 -4
  4. megadetector/data_management/cct_to_wi.py +5 -1
  5. megadetector/data_management/coco_to_yolo.py +3 -2
  6. megadetector/data_management/databases/combine_coco_camera_traps_files.py +4 -4
  7. megadetector/data_management/databases/integrity_check_json_db.py +2 -2
  8. megadetector/data_management/databases/subset_json_db.py +0 -3
  9. megadetector/data_management/generate_crops_from_cct.py +6 -4
  10. megadetector/data_management/get_image_sizes.py +5 -35
  11. megadetector/data_management/labelme_to_coco.py +10 -6
  12. megadetector/data_management/labelme_to_yolo.py +19 -28
  13. megadetector/data_management/lila/create_lila_test_set.py +22 -2
  14. megadetector/data_management/lila/generate_lila_per_image_labels.py +7 -5
  15. megadetector/data_management/lila/lila_common.py +2 -2
  16. megadetector/data_management/lila/test_lila_metadata_urls.py +0 -1
  17. megadetector/data_management/ocr_tools.py +6 -10
  18. megadetector/data_management/read_exif.py +59 -16
  19. megadetector/data_management/remap_coco_categories.py +1 -1
  20. megadetector/data_management/remove_exif.py +10 -5
  21. megadetector/data_management/rename_images.py +20 -13
  22. megadetector/data_management/resize_coco_dataset.py +10 -4
  23. megadetector/data_management/speciesnet_to_md.py +3 -3
  24. megadetector/data_management/yolo_output_to_md_output.py +3 -1
  25. megadetector/data_management/yolo_to_coco.py +28 -19
  26. megadetector/detection/change_detection.py +26 -18
  27. megadetector/detection/process_video.py +1 -1
  28. megadetector/detection/pytorch_detector.py +5 -5
  29. megadetector/detection/run_detector.py +34 -10
  30. megadetector/detection/run_detector_batch.py +2 -1
  31. megadetector/detection/run_inference_with_yolov5_val.py +3 -1
  32. megadetector/detection/run_md_and_speciesnet.py +215 -101
  33. megadetector/detection/run_tiled_inference.py +7 -7
  34. megadetector/detection/tf_detector.py +1 -1
  35. megadetector/detection/video_utils.py +9 -6
  36. megadetector/postprocessing/add_max_conf.py +4 -4
  37. megadetector/postprocessing/categorize_detections_by_size.py +3 -2
  38. megadetector/postprocessing/classification_postprocessing.py +7 -8
  39. megadetector/postprocessing/combine_batch_outputs.py +3 -2
  40. megadetector/postprocessing/compare_batch_results.py +49 -27
  41. megadetector/postprocessing/convert_output_format.py +8 -6
  42. megadetector/postprocessing/create_crop_folder.py +13 -4
  43. megadetector/postprocessing/generate_csv_report.py +22 -8
  44. megadetector/postprocessing/load_api_results.py +8 -4
  45. megadetector/postprocessing/md_to_coco.py +2 -3
  46. megadetector/postprocessing/md_to_labelme.py +12 -8
  47. megadetector/postprocessing/md_to_wi.py +2 -1
  48. megadetector/postprocessing/merge_detections.py +4 -6
  49. megadetector/postprocessing/postprocess_batch_results.py +4 -3
  50. megadetector/postprocessing/remap_detection_categories.py +6 -3
  51. megadetector/postprocessing/render_detection_confusion_matrix.py +18 -10
  52. megadetector/postprocessing/repeat_detection_elimination/remove_repeat_detections.py +1 -1
  53. megadetector/postprocessing/repeat_detection_elimination/repeat_detections_core.py +5 -3
  54. megadetector/postprocessing/separate_detections_into_folders.py +10 -4
  55. megadetector/postprocessing/subset_json_detector_output.py +1 -1
  56. megadetector/postprocessing/top_folders_to_bottom.py +22 -7
  57. megadetector/postprocessing/validate_batch_results.py +1 -1
  58. megadetector/taxonomy_mapping/map_new_lila_datasets.py +59 -3
  59. megadetector/taxonomy_mapping/prepare_lila_taxonomy_release.py +1 -1
  60. megadetector/taxonomy_mapping/preview_lila_taxonomy.py +26 -17
  61. megadetector/taxonomy_mapping/species_lookup.py +51 -2
  62. megadetector/utils/ct_utils.py +9 -4
  63. megadetector/utils/extract_frames_from_video.py +4 -0
  64. megadetector/utils/gpu_test.py +6 -6
  65. megadetector/utils/md_tests.py +21 -21
  66. megadetector/utils/path_utils.py +112 -44
  67. megadetector/utils/split_locations_into_train_val.py +0 -4
  68. megadetector/utils/url_utils.py +5 -3
  69. megadetector/utils/wi_taxonomy_utils.py +37 -8
  70. megadetector/utils/write_html_image_list.py +1 -2
  71. megadetector/visualization/plot_utils.py +31 -19
  72. megadetector/visualization/render_images_with_thumbnails.py +3 -0
  73. megadetector/visualization/visualization_utils.py +18 -7
  74. megadetector/visualization/visualize_db.py +9 -26
  75. megadetector/visualization/visualize_video_output.py +14 -2
  76. {megadetector-10.0.10.dist-info → megadetector-10.0.11.dist-info}/METADATA +1 -1
  77. {megadetector-10.0.10.dist-info → megadetector-10.0.11.dist-info}/RECORD +80 -80
  78. {megadetector-10.0.10.dist-info → megadetector-10.0.11.dist-info}/WHEEL +0 -0
  79. {megadetector-10.0.10.dist-info → megadetector-10.0.11.dist-info}/licenses/LICENSE +0 -0
  80. {megadetector-10.0.10.dist-info → megadetector-10.0.11.dist-info}/top_level.txt +0 -0
@@ -300,7 +300,9 @@ def _process_video(video_entry,
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  output_fn_relative = os.path.splitext(output_fn_relative)[0] + ext
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  output_fn_abs = os.path.join(out_dir, output_fn_relative)
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- os.makedirs(os.path.dirname(output_fn_abs), exist_ok=True)
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+ parent_dir = os.path.dirname(output_fn_abs)
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+ if len(parent_dir) > 0:
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+ os.makedirs(parent_dir, exist_ok=True)
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  # Get frames to process
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  frames_to_process = _get_frames_to_process(video_entry,
@@ -395,6 +397,8 @@ def _process_video(video_entry,
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  # Write output video
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  if len(rendered_frames) > 0:
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+ video_writer = None
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+
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  try:
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  # Get frame dimensions
@@ -412,7 +416,6 @@ def _process_video(video_entry,
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  for frame in rendered_frames:
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  video_writer.write(frame)
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- video_writer.release()
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  result['success'] = True
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  result['frames_processed'] = len(rendered_frames)
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@@ -421,6 +424,15 @@ def _process_video(video_entry,
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  result['error'] = 'Error writing output video: {}'.format(str(e))
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  return result
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+ finally:
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+
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+ if video_writer is not None:
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+ try:
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+ video_writer.release()
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+ except Exception as e:
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+ print('Warning: failed to release video writer for file {}: {}'.format(
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+ video_entry['file'],str(e)))
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+
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  # ...try/except
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  else:
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: megadetector
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- Version: 10.0.10
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+ Version: 10.0.11
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  Summary: MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.
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  Author-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
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  Maintainer-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
@@ -30,118 +30,118 @@ megadetector/classification/efficientnet/__init__.py,sha256=e-jfknjzCc5a0CSW-TaZ
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  megadetector/classification/efficientnet/model.py,sha256=o7m379-FVeHrioW1HSJ48fLUqH9MMlf4b1BwktL2EoQ,17120
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  megadetector/classification/efficientnet/utils.py,sha256=76SQdh0zK7CFcwTW4kiechCGMHSftPT0tC1PtqNRLZI,24756
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  megadetector/data_management/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
33
- megadetector/data_management/animl_to_md.py,sha256=Z6PDJxeM_5dMZJBM3j0mxDPW2_1bNkXx0M3_qq42_Ig,4416
33
+ megadetector/data_management/animl_to_md.py,sha256=N9SYd-1nXavY-T9kVmfSdBNaCVH_Lvavq4gBXGgsC5w,4615
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  megadetector/data_management/camtrap_dp_to_coco.py,sha256=HoCGMzZTEvnudnAjbOr-mCizXHmc8mMNSUChy_Q9PkI,9673
35
- megadetector/data_management/cct_json_utils.py,sha256=Azyuwok6-g5YGVAdBzv3-eJIlplXCoTcjGWu6zy9bQ0,19917
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- megadetector/data_management/cct_to_md.py,sha256=e1fYevSz0m65n5H16uB6uwzNiXiwxjdB2ka5p68R4d0,5120
37
- megadetector/data_management/cct_to_wi.py,sha256=wcBOmurXY5I-hiqV6SmRSGUAeYaKHEU1LgCZjqVmCyw,9561
35
+ megadetector/data_management/cct_json_utils.py,sha256=SsTVQKS0bEOLkOUB5K51Bkr579xuDbF5eDoBp0AJxyQ,20006
36
+ megadetector/data_management/cct_to_md.py,sha256=kCRFiD5y6TpDGkQW7XyIJnxOr4bUSiRpBY5l90DyO_0,5151
37
+ megadetector/data_management/cct_to_wi.py,sha256=0WO757yJ0lEG74gOuadym-YBb16uso_4T38CfY3jbXw,9594
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  megadetector/data_management/coco_to_labelme.py,sha256=uYJ60XoZfHUEfLzj-EjLyeNM590skNnMp-IThWwNISo,8683
39
- megadetector/data_management/coco_to_yolo.py,sha256=UwFaLRuh5emeZx8i-Bi4uyPxXSH0bG3LRhv8I5NxJTQ,28602
40
- megadetector/data_management/generate_crops_from_cct.py,sha256=sKvT0NTsKhuVQYI0SOQYwrDgMY1rVQO97AXftz9ERSQ,5357
41
- megadetector/data_management/get_image_sizes.py,sha256=sZtjRxhlIj56oA9X4Iq1ek4xeT3MllyWpZCOV19MkCY,6501
42
- megadetector/data_management/labelme_to_coco.py,sha256=SO6DMfJ9WNlMUHF9EUYWjSNyepqudO3qzxknnzSZHdE,20958
43
- megadetector/data_management/labelme_to_yolo.py,sha256=bsqpNUsnDJucJ60wSQD_yvq_tWiots1u4tSFNiHeaYA,12769
39
+ megadetector/data_management/coco_to_yolo.py,sha256=HJPi948FShnP9tOonWBrbgP1IfiJvHdbYBNeF3TGHEc,28647
40
+ megadetector/data_management/generate_crops_from_cct.py,sha256=ijQCTpqRA6e4CVYEeY5xPs5h3vqh5DKLB-5ttij7Ed0,5501
41
+ megadetector/data_management/get_image_sizes.py,sha256=EZQO0iF9iTl2imp_K62jIKDvYeqb1E96-v3F7srUeF4,5717
42
+ megadetector/data_management/labelme_to_coco.py,sha256=zdb4npyz2gU0_XuIw1DgQ3zmHX53P8D83AhGdd5mRwM,21119
43
+ megadetector/data_management/labelme_to_yolo.py,sha256=gQ3c2-U8v0KE4sf8MboLfbqar_kBiKhyQw4CgproXy4,12579
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  megadetector/data_management/mewc_to_md.py,sha256=09XHEykIG-whGkgEIkho7xfVuPlic1TYTKGAufv_tto,12637
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- megadetector/data_management/ocr_tools.py,sha256=aYpULCPn_tHaqatOd8qjEpKJ7MksRZS0o1kqQF04IE0,31389
46
- megadetector/data_management/read_exif.py,sha256=80L_P2mGRKGA02X7jaGje27pwxrZ7mfIPo5IHKpYihc,30166
47
- megadetector/data_management/remap_coco_categories.py,sha256=DT4Rdt7Y1IdhbO2TZiBhQDESdit-l_-b_Hw0tbJ2Nuw,7090
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- megadetector/data_management/remove_exif.py,sha256=5JHGWMIeXqB2PE2ZwIMJOEtNYopxknNDwynQAuJCLvw,4031
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- megadetector/data_management/rename_images.py,sha256=iHkdQ_c1G9Oc8C4wcnPLmhKv0S9i9g7ppbytfBBqn2Y,6516
50
- megadetector/data_management/resize_coco_dataset.py,sha256=onXe3y27QKC53OQQ2Y2h9115-UOztQYWpOoTljUbKxY,26613
51
- megadetector/data_management/speciesnet_to_md.py,sha256=nY3_5z-rEYzYUB1w216ARRTIOuB6O1JAD7LKBDip1oI,1386
45
+ megadetector/data_management/ocr_tools.py,sha256=jqAvi7Fky9eAgQ4XwMymDVTfT_XCmpjjOc_DEhLeV9I,31369
46
+ megadetector/data_management/read_exif.py,sha256=1Qshp75IbzM91HZPhmwQQ9ENr-kmmDK3g7Qdzp_UG8g,31043
47
+ megadetector/data_management/remap_coco_categories.py,sha256=BBfnUzvV5V1yZa6dvXYiAYPyTxmXLX0hX0-izXw3WIM,7091
48
+ megadetector/data_management/remove_exif.py,sha256=IFrqkXDBxvf8a1gJii9QTi8_i4bjvBlYDnpQwpOTy70,4270
49
+ megadetector/data_management/rename_images.py,sha256=29MS4rxHI7Esym0VDmMYyMi7e9__hOkcRcy8k0Tyd04,6632
50
+ megadetector/data_management/resize_coco_dataset.py,sha256=FDq2sw6YD1VQtchsKp90_N5FsY5xpmX9gFV8obUlXtU,26739
51
+ megadetector/data_management/speciesnet_to_md.py,sha256=VlbqmuFJbXNQeHs7ndrWgwo6dK8sMXqHFWaeKNOaOq4,1436
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52
  megadetector/data_management/wi_download_csv_to_coco.py,sha256=rhqWSEmDiXs1GbHavoNwdGSqk01-a-4xmz7z7x1Qjs4,7973
53
- megadetector/data_management/yolo_output_to_md_output.py,sha256=4wU31dHo8rSwge91m0bO0YAYrytvmxZH0YRHiRjRGa8,22509
54
- megadetector/data_management/yolo_to_coco.py,sha256=5fa7VAbRZQgWK-03DeyVhpj6qeIW6cT7v8B33rhsN3I,31003
53
+ megadetector/data_management/yolo_output_to_md_output.py,sha256=6O7Of-zFcZkJRuJucl1si2Z_7s2KfwQ7dKudpHomwJA,22562
54
+ megadetector/data_management/yolo_to_coco.py,sha256=QClb1ztLya7eNNV8puOKd6Ipui7ZKNLhAo6BXWKZEDY,31348
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55
  megadetector/data_management/zamba_to_md.py,sha256=f6hK0pdVY0FhN_7DqKhY5BswYps7fO-Hy5ojmRvntok,5314
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56
  megadetector/data_management/annotations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
57
57
  megadetector/data_management/annotations/annotation_constants.py,sha256=Fp_uaFQbMzhjMBcXOBUuTA9eOmenjPboMQojPQUaJjI,951
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  megadetector/data_management/databases/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  megadetector/data_management/databases/add_width_and_height_to_db.py,sha256=EYfFGPkXyFz6ZGQfXjCK3pNXLBg0hu73wiACdEEB0E0,2964
60
- megadetector/data_management/databases/combine_coco_camera_traps_files.py,sha256=Au7akR2KZHm_l8-MGGRGf0CQy1az_JVgZW5Yz1_XQeQ,6609
61
- megadetector/data_management/databases/integrity_check_json_db.py,sha256=kxGCHpBADXT_LHVLUENGvmby-orvVYIsK6fdgqhABBI,17386
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- megadetector/data_management/databases/subset_json_db.py,sha256=AQF-12vnZJ73JrWvjUd2ME666MmQDiCOvO0e7zGjPpg,6243
60
+ megadetector/data_management/databases/combine_coco_camera_traps_files.py,sha256=HiQjvkdiCfAxH3giV1qst_Fxi4rvXRqwcUeammz_NJs,6629
61
+ megadetector/data_management/databases/integrity_check_json_db.py,sha256=UTxYkla4wt3sX4sgCFPvTxZi550V3QT3mqQNEi6V1nM,17416
62
+ megadetector/data_management/databases/subset_json_db.py,sha256=1oTohzopppvydslh-9IL4s4G-Hy5Xl0vigCfWxMrhHY,6137
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  megadetector/data_management/lila/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
64
64
  megadetector/data_management/lila/create_lila_blank_set.py,sha256=tApCL4XN1Vzl6YvcdI6SY4TZbHeCyHLzNYweFfX0sy0,19490
65
- megadetector/data_management/lila/create_lila_test_set.py,sha256=UWJPKrwNW-UVeGrMUrFvmIt2UHVyuFiPzRFKkbEbk5A,5014
65
+ megadetector/data_management/lila/create_lila_test_set.py,sha256=CTYXEpxhGmIu5UH0wTSkY4-BEzGLXS8lb4yXeqeigFU,5705
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66
  megadetector/data_management/lila/create_links_to_md_results_files.py,sha256=XrtbM1MJtN-4PKzViGkDov8Rw-lJogF1E8_hHh6wR9U,3687
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67
  megadetector/data_management/lila/download_lila_subset.py,sha256=coLlmga7r5I37L_YxjUoERLC1JAGUjcED16oWtd072Y,5339
68
- megadetector/data_management/lila/generate_lila_per_image_labels.py,sha256=PIFfQudH2z02q4diJ0zujqIneWnnrEN9ceHSCWmZYQQ,25760
68
+ megadetector/data_management/lila/generate_lila_per_image_labels.py,sha256=fN8RlV_2QMtasBKIqT5ceL-hxhZ4Vx1xA9R-EvnVe74,25868
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69
  megadetector/data_management/lila/get_lila_annotation_counts.py,sha256=1U-49HVsgc_rmN1KrocI1mwFvS61FPxA9I_DyzS9YMg,5534
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  megadetector/data_management/lila/get_lila_image_counts.py,sha256=Jz89nNHwghguMJBUs1v_ZN5VPwg9zH9ggat-6ZsUfQ4,3518
71
- megadetector/data_management/lila/lila_common.py,sha256=IRWs46TrxcjckLidDwXPmb5O6kyW6qvSWf8CQo2ctfM,10791
72
- megadetector/data_management/lila/test_lila_metadata_urls.py,sha256=ThU78Ks5V3rFyJSKStFcM5M2yTlhR_pgMTa6_KuF5Hs,5256
71
+ megadetector/data_management/lila/lila_common.py,sha256=KDFzbSdidC4kIaJ2Rc1PCbwf97HB7psnGPzkqNQmwxs,10808
72
+ megadetector/data_management/lila/test_lila_metadata_urls.py,sha256=q3FAHgqHqtz4T2Nz_JcFiPMq8XdPAZqppIkpqF-Dtv8,5255
73
73
  megadetector/detection/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
74
- megadetector/detection/change_detection.py,sha256=Ne3GajbH_0KPBU8ruHp4Rkr0uKd5oKAMQ3CQTRKRHgQ,28659
75
- megadetector/detection/process_video.py,sha256=kuQHrpOC3LQo9ecqJPpzkds9fZVnoLmrfJw_yh-oxi8,17890
76
- megadetector/detection/pytorch_detector.py,sha256=-TvtDcX2Hh_CgBEz7Eg2NzyEts8DjOgY0mE_fle6zkM,60705
77
- megadetector/detection/run_detector.py,sha256=JWTIYsk5aCgW9PBCGnAECe31JwKHhkfp6zKsSDqfrsA,46831
78
- megadetector/detection/run_detector_batch.py,sha256=gc3T_h61tRk705Lxbi4BXboc-BmaitiNd-5cR5MzHC0,91423
79
- megadetector/detection/run_inference_with_yolov5_val.py,sha256=dJXh3BwKOQQ4OA-Mq_heEb7AfBAk7qKUAagnIGuFtaU,53689
80
- megadetector/detection/run_md_and_speciesnet.py,sha256=LMpQVqpLqju2WFznHGKEyc9QCgU4pHSPyfDnf0HL9GA,52179
81
- megadetector/detection/run_tiled_inference.py,sha256=v_wL4uZfYdswJdYXBoGci62UvVprBD9OHKkrw2g-G5M,41081
82
- megadetector/detection/tf_detector.py,sha256=E0PZ1jHAv31kvsdaUD8IjuPmdLulkKwx6s2wbPMK-WQ,8151
83
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115
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117
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118
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119
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120
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122
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131
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141
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