medpython 1.2.0__cp314-cp314-win_amd64.whl
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- AlgoMarker/AlgoMarker.py +872 -0
- AlgoMarker/__init__.py +12 -0
- med/Release/_medpython.pyd +0 -0
- med/__init__.py +12 -0
- med/_medpython.pyd +0 -0
- med/med.py +4 -0
- med/medpython.py +3995 -0
- medpython-1.2.0.dist-info/DELVEWHEEL +2 -0
- medpython-1.2.0.dist-info/METADATA +201 -0
- medpython-1.2.0.dist-info/RECORD +16 -0
- medpython-1.2.0.dist-info/WHEEL +5 -0
- medpython-1.2.0.dist-info/licenses/LICENCE +21 -0
- medpython-1.2.0.dist-info/top_level.txt +2 -0
- medpython.libs/concrt140-b5f14f08cfeabe717a4945429e207076.dll +0 -0
- medpython.libs/msvcp140-a4c2229bdc2a2a630acdc095b4d86008.dll +0 -0
- medpython.libs/vcomp140-f96f3a14d88d8846f31f3ab38a490304.dll +0 -0
med/medpython.py
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# This file was automatically generated by SWIG (https://www.swig.org).
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# Version 4.4.1
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#
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# Do not make changes to this file unless you know what you are doing - modify
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# the SWIG interface file instead.
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"""
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class Dictionary
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Methods:
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__init__(PidRepository rep) -> Dictionary
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get_members_to_all_sets(int section_id, int * members_array) -> IntVecIntMapAdaptor
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id(string & signame) -> int
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name(int id) -> string
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prep_sets_lookup_table(int section_id, StringVector set_names)
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section_id(string name) -> int
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class FeatureAttr
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Methods:
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imputed -> bool (property getter)
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normalized -> bool (property getter)
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imputed <- bool (property setter)
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normalized <- bool (property setter)
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__init__() -> FeatureAttr
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Data descriptors:
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imputed -> bool (property getter)
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normalized -> bool (property getter)
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class Features
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Methods:
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attributes -> StringFeatureAttrMapAdaptor (property getter)
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data -> StringVecFloatMapAdaptor (property getter)
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pid_pos_len -> IntPairIntIntMapAdaptor (property getter)
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samples -> SampleVectorAdaptor (property getter)
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tags -> StringUOSetStringMapAdaptor (property getter)
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time_unit -> int (property getter)
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weights (property getter)
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time_unit <- int (property setter)
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__init__() -> Features
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__init__(int _time_unit) -> Features
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__init__(Features other) -> Features
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append_samples(IdSamples in_samples)
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append_samples(Samples in_samples)
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clear()
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filter(StringVector selectedFeatures) -> int
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get_as_matrix(Mat mat)
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get_as_matrix(Mat mat, vector< string > names)
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get_as_matrix(Mat mat, vector< string > const names, int * int_in_buf)
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get_crc() -> unsigned int
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get_feature_names() -> StringVector
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get_max_serial_id_cnt() -> int
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get_pid_len(int pid) -> int
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get_pid_pos(int pid) -> int
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get_samples(Samples outSamples)
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init_all_samples(IdSamplesVectorAdaptor in_samples)
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init_pid_pos_len()
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insert_samples(IdSamples in_samples, int index)
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print_csv()
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read_from_csv_mat(string const & csv_fname) -> int
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set_as_matrix(Mat mat)
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set_time_unit(int _time_unit)
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version() -> int
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write_as_csv_mat(string const & csv_fname) -> int
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Static methods:
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global_serial_id_cnt (property getter)
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global_serial_id_cnt -> int (property getter)
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MEDPY_SET_global_serial_id_cnt(*args)
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MEDPY_SET_global_serial_id_cnt(int newval)
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Data descriptors:
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attributes -> StringFeatureAttrMapAdaptor (property getter)
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data -> StringVecFloatMapAdaptor (property getter)
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global_serial_id_cnt
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pid_pos_len -> IntPairIntIntMapAdaptor (property getter)
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samples -> SampleVectorAdaptor (property getter)
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tags -> StringUOSetStringMapAdaptor (property getter)
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time_unit -> int (property getter)
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weights (property getter)
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class IdSamples
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Methods:
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id -> int (property getter)
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samples -> SampleVectorAdaptor (property getter)
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split -> int (property getter)
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id <- int (property setter)
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split <- int (property setter)
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__init__(int _id) -> IdSamples
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__init__() -> IdSamples
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same_as(IdSamples other, int mode) -> bool
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set_split(int _split)
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Data descriptors:
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id -> int (property getter)
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samples -> SampleVectorAdaptor (property getter)
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split -> int (property getter)
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class Mat
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Methods:
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avg (property getter)
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missing_value -> float (property getter)
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ncols -> int (property getter)
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normalized_flag -> int (property getter)
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nrows -> int (property getter)
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row_ids (property getter)
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signals -> StringVector (property getter)
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std (property getter)
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transposed_flag -> int (property getter)
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missing_value <- float (property setter)
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normalized_flag <- int (property setter)
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row_ids <- int (property setter)
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transposed_flag <- int (property setter)
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__getitem__(IntVector index) -> float
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__init__() -> Mat
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__init__(int n_rows, int n_cols) -> Mat
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__init__(float * IN_ARRAY2) -> Mat
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__len__() -> unsigned long long
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__setitem__(IntVector index, float val)
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add_cols(Mat m_add)
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add_cols(float * m_add)
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add_rows(Mat m_add)
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add_rows(float * m_add)
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clear()
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get_col(int i_col)
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get_cols_avg_std()
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get_numpy_copy()
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get_numpy_view_unsafe()
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get_row(int i_row)
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get_sub_mat(vector< int > & rows_to_take, vector< int > & cols_to_take)
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get_sub_mat_by_flags(vector< int > & rows_to_take_flag, vector< int > & cols_to_take_flag)
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is_valid(bool output=False) -> bool
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is_valid() -> bool
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load(float * IN_ARRAY2)
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load(Mat x)
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load_numpy(float * IN_ARRAY2)
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load_transposed(float * IN_ARRAY2)
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normalize(int norm_type, float * wgts)
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normalize(int norm_type=Normalize_Cols)
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normalize()
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normalize(float * external_avg, float * external_std, int norm_type=1)
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normalize(float * external_avg, float * external_std)
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read_from_bin_file(string const & fname) -> int
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read_from_csv_file(string const & fname, int titles_line_flag) -> int
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resize(int n_rows, int n_cols)
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set_signals(StringVector sigs)
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set_val(float val)
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test(int n_rows, int n_cols)
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transpose()
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write_to_bin_file(string const & fname) -> int
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write_to_csv_file(string const & fname) -> int
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zero()
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Static methods:
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Normalize_Cols (property getter)
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Normalize_Cols -> int (property getter)
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Normalize_Rows (property getter)
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Normalize_Rows -> int (property getter)
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Data descriptors:
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Normalize_Cols
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Normalize_Rows
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avg (property getter)
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missing_value -> float (property getter)
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ncols -> int (property getter)
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normalized_flag -> int (property getter)
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nrows -> int (property getter)
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row_ids (property getter)
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signals -> StringVector (property getter)
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std (property getter)
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transposed_flag -> int (property getter)
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class Model
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Methods:
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features -> Features (property getter)
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verbosity -> int (property getter)
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verbosity <- int (property setter)
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__init__() -> Model
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add_age()
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add_feature_generator(string & name, string & signal)
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add_feature_generator_to_set(int i_set, string const & init_string)
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add_feature_generators(string & name, vector< string > & signals)
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add_feature_generators(string & name, vector< string > & signals, string init_string)
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add_feature_generators(string & name, string & signal, string init_string)
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add_feature_processor_to_set(int i_set, int duplicate, string const & init_string)
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add_gender()
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add_imputers()
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add_imputers(string init_string)
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add_imputers(vector< string > & features)
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add_imputers(vector< string > & features, string init_string)
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add_normalizers()
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add_normalizers(string init_string)
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add_normalizers(vector< string > & features)
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add_normalizers(vector< string > & features, string init_string)
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add_process_to_set(int i_set, int duplicate, string const & init_string)
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add_process_to_set(int i_set, string const & init_string)
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add_rep_processor_to_set(int i_set, string const & init_string)
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apply(PidRepository rep, Samples samples) -> int
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apply(PidRepository rep, Samples samples, int start_stage, int end_stage) -> int
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apply_feature_processors(Features features) -> int
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clear()
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collect_and_add_virtual_signals(PidRepository rep) -> int
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dprint_process(string const & pref, int rp_flag, int fg_flag, int fp_flag)
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filter_rep_processors()
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generate_all_features(PidRepository rep, Samples samples, Features features, StringVector req_feature_generators) -> int
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get_all_features_names(vector< string > & feat_names, int before_process_set)
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get_required_signal_names() -> StringVector
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init_from_json_file(std::string const & fname)
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init_from_json_file_with_alterations(std::string const & fname, StringVector json_alt) -> StringVector
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learn(PidRepository rep, Samples samples) -> int
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learn(PidRepository rep, Samples samples, int start_stage, int end_stage) -> int
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learn_and_apply_feature_processors(Features features) -> int
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learn_feature_generators(PidRepository rep, Samples learn_samples) -> int
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learn_feature_processors(Features features) -> int
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learn_rep_processors(PidRepository rep, Samples samples) -> int
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quick_learn_rep_processors(PidRepository rep, Samples samples) -> int
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read_from_file(string const & fname) -> int
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set_predictor(string name)
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set_predictor(string name, string init_string)
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write_feature_matrix(string const mat_fname) -> int
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write_to_file(std::string const & fname) -> int
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Data descriptors:
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features -> Features (property getter)
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verbosity -> int (property getter)
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class ModelStage
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Methods:
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__init__() -> ModelStage
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Data and other attributes:
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APPLY_FTR_GENERATORS = 2
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APPLY_FTR_PROCESSORS = 4
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APPLY_PREDICTOR = 6
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END = 8
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INSERT_PREDS = 7
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LEARN_FTR_GENERATORS = 1
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LEARN_FTR_PROCESSORS = 3
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LEARN_PREDICTOR = 5
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LEARN_REP_PROCESSORS = 0
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class PidRepository
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pids -> IntVector (property getter)
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__init__() -> PidRepository
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dict_name(int_section_id, int_id) -> string
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returns name of section + id
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dict_prep_sets_lookup_table(int_section_id, list_String set_names) -> BoolVector
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returns a look-up-table for given set names
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dict_section_id(str_secName) -> int
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returns section id number for a given section name
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export_to_numpy(str_signame) -> SigExporter
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Returns the signal data represented as a list of numpy arrays, one for each field
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get_sig = __export_to_pandas(self, sig_name_str, translate=True, pids=None)
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get_sig(signame [, translate=True][, pids=None]) -> Pandas DataFrame
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translate : If True, will decode categorical fields into a readable representation in Pandas
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pid : If list is provided, will load only pids from the given list
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If 'All' is provided, will use all available pids
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init(conf_file_name) -> int
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returns -1 if fails
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loadsig(str_signame) -> int
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load a signal
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read_all(conf_file_fname, [pids_to_take_array], [list_str_signals_to_take]) -> int
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returns -1 if fails
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reading a repository for a group of pids and signals.Empty group means all of it.
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read_all(conf_file_fname, [pids_to_take_array], [list_str_signals_to_take]) -> int
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returns -1 if fails
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reading a repository for a group of pids and signals.Empty group means all of it.
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read_all_i(std::string const & conf_fname, IntVector pids_to_take, IntVector signals_to_take) -> int
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sig_id(str_signame) -> int
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returns signal id number for a given signal name
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sig_type(str_signame) -> int
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returns signal type id for a given signal name
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uget(int_pid, int_sid) -> SigVectorAdaptor
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returns a vector of universal signals
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Data descriptors:
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dict
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PidRepository_dict_get() -> Dictionary
|
|
287
|
+
pids -> IntVector (property getter)
|
|
288
|
+
|
|
289
|
+
|
|
290
|
+
class Sample
|
|
291
|
+
Methods:
|
|
292
|
+
id -> int (property getter)
|
|
293
|
+
outcome -> int (property getter)
|
|
294
|
+
outcomeTime -> int (property getter)
|
|
295
|
+
prediction (property getter)
|
|
296
|
+
split -> int (property getter)
|
|
297
|
+
time -> int (property getter)
|
|
298
|
+
id <- int (property setter)
|
|
299
|
+
outcome <- int (property setter)
|
|
300
|
+
outcomeTime <- int (property setter)
|
|
301
|
+
prediction <- float (property setter)
|
|
302
|
+
split <- int (property setter)
|
|
303
|
+
time <- int (property setter)
|
|
304
|
+
__copy__() -> Sample
|
|
305
|
+
__init__() -> Sample
|
|
306
|
+
parse_from_string(string & s, int time_unit) -> int
|
|
307
|
+
print_(string const prefix)
|
|
308
|
+
print_()
|
|
309
|
+
write_to_string(string & s, int time_unit)
|
|
310
|
+
|
|
311
|
+
Data descriptors:
|
|
312
|
+
id -> int (property getter)
|
|
313
|
+
outcome -> int (property getter)
|
|
314
|
+
outcomeTime -> int (property getter)
|
|
315
|
+
prediction (property getter)
|
|
316
|
+
split -> int (property getter)
|
|
317
|
+
time -> int (property getter)
|
|
318
|
+
|
|
319
|
+
|
|
320
|
+
class Samples
|
|
321
|
+
Methods:
|
|
322
|
+
idSamples -> IdSamplesVectorAdaptor (property getter)
|
|
323
|
+
time_unit -> int (property getter)
|
|
324
|
+
time_unit <- int (property setter)
|
|
325
|
+
from_df(PandasAdaptor pandas_df)
|
|
326
|
+
to_df() -> PandasAdaptor
|
|
327
|
+
__init__() -> Samples
|
|
328
|
+
append(Samples newSamples)
|
|
329
|
+
as_df = __sample_export_to_pandas(self)
|
|
330
|
+
clear()
|
|
331
|
+
dilute(float prob)
|
|
332
|
+
export_to_pandas_df() -> SampleVecExporter
|
|
333
|
+
export_to_sample_vec() -> SampleVectorAdaptor
|
|
334
|
+
get_attributes() -> StringVector
|
|
335
|
+
get_categs()
|
|
336
|
+
get_ids()
|
|
337
|
+
get_predictions_size() -> int
|
|
338
|
+
get_preds()
|
|
339
|
+
get_str_attributes() -> StringVector
|
|
340
|
+
get_y()
|
|
341
|
+
insertRec(int pid, int time, float outcome, int outcomeTime)
|
|
342
|
+
insertRec(int pid, int time, float outcome, int outcomeTime, float pred)
|
|
343
|
+
insertRec(int pid, int time)
|
|
344
|
+
insert_preds(Features featuresData) -> int
|
|
345
|
+
nSamples() -> int
|
|
346
|
+
normalize()
|
|
347
|
+
read_from_bin_file(string const & file_name) -> int
|
|
348
|
+
read_from_file(string const & file_name) -> int
|
|
349
|
+
same_as(Samples other, int mode) -> bool
|
|
350
|
+
sort_by_id_date()
|
|
351
|
+
version() -> int
|
|
352
|
+
write_to_bin_file(string const & file_name) -> int
|
|
353
|
+
write_to_file(string const & fname) -> int
|
|
354
|
+
|
|
355
|
+
Data descriptors:
|
|
356
|
+
idSamples -> IdSamplesVectorAdaptor (property getter)
|
|
357
|
+
time_unit -> int (property getter)
|
|
358
|
+
|
|
359
|
+
|
|
360
|
+
class Sig
|
|
361
|
+
Methods:
|
|
362
|
+
__init__(Sig other) -> Sig
|
|
363
|
+
date(int chan=0) -> int
|
|
364
|
+
date() -> int
|
|
365
|
+
days(int chan=0) -> int
|
|
366
|
+
days() -> int
|
|
367
|
+
hours(int chan=0) -> int
|
|
368
|
+
hours() -> int
|
|
369
|
+
minutes(int chan=0) -> int
|
|
370
|
+
minutes() -> int
|
|
371
|
+
months(int chan=0) -> int
|
|
372
|
+
months() -> int
|
|
373
|
+
time(int chan=0) -> int
|
|
374
|
+
time() -> int
|
|
375
|
+
timeU(int to_time_unit) -> int
|
|
376
|
+
val(int chan=0) -> float
|
|
377
|
+
val() -> float
|
|
378
|
+
years(int chan=0) -> int
|
|
379
|
+
years() -> int
|
|
380
|
+
|
|
381
|
+
|
|
382
|
+
class Split
|
|
383
|
+
Methods:
|
|
384
|
+
nsplits -> int (property getter)
|
|
385
|
+
pid2split -> IntIntMapAdaptor (property getter)
|
|
386
|
+
__init__() -> Split
|
|
387
|
+
clear()
|
|
388
|
+
read_from_file(string const & fname) -> int
|
|
389
|
+
write_to_file(string const & fname) -> int
|
|
390
|
+
|
|
391
|
+
Data descriptors:
|
|
392
|
+
nsplits -> int (property getter)
|
|
393
|
+
pid2split -> IntIntMapAdaptor (property getter)
|
|
394
|
+
|
|
395
|
+
|
|
396
|
+
class Time
|
|
397
|
+
Methods:
|
|
398
|
+
__init__() -> Time
|
|
399
|
+
Data and other attributes:
|
|
400
|
+
Date = 1
|
|
401
|
+
DateTimeString = 7
|
|
402
|
+
Days = 4
|
|
403
|
+
Hours = 5
|
|
404
|
+
Minutes = 6
|
|
405
|
+
Months = 3
|
|
406
|
+
Undefined = 0
|
|
407
|
+
Years = 2
|
|
408
|
+
|
|
409
|
+
|
|
410
|
+
"""
|
|
411
|
+
|
|
412
|
+
from sys import version_info as _swig_python_version_info
|
|
413
|
+
# Import the low-level C/C++ module
|
|
414
|
+
if getattr(globals().get("__spec__"), "parent", None) or __package__ or "." in __name__:
|
|
415
|
+
from . import _medpython
|
|
416
|
+
else:
|
|
417
|
+
import _medpython
|
|
418
|
+
|
|
419
|
+
try:
|
|
420
|
+
import builtins as __builtin__
|
|
421
|
+
except ImportError:
|
|
422
|
+
import __builtin__
|
|
423
|
+
|
|
424
|
+
def _swig_repr(self):
|
|
425
|
+
try:
|
|
426
|
+
strthis = "proxy of " + self.this.__repr__()
|
|
427
|
+
except __builtin__.Exception:
|
|
428
|
+
strthis = ""
|
|
429
|
+
return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
|
|
430
|
+
|
|
431
|
+
|
|
432
|
+
def _swig_setattr_nondynamic_instance_variable(set):
|
|
433
|
+
def set_instance_attr(self, name, value):
|
|
434
|
+
if name == "this":
|
|
435
|
+
set(self, name, value)
|
|
436
|
+
elif name == "thisown":
|
|
437
|
+
self.this.own(value)
|
|
438
|
+
elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
|
|
439
|
+
set(self, name, value)
|
|
440
|
+
else:
|
|
441
|
+
raise AttributeError("You cannot add instance attributes to %s" % self)
|
|
442
|
+
return set_instance_attr
|
|
443
|
+
|
|
444
|
+
|
|
445
|
+
def _swig_setattr_nondynamic_class_variable(set):
|
|
446
|
+
def set_class_attr(cls, name, value):
|
|
447
|
+
if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
|
|
448
|
+
set(cls, name, value)
|
|
449
|
+
else:
|
|
450
|
+
raise AttributeError("You cannot add class attributes to %s" % cls)
|
|
451
|
+
return set_class_attr
|
|
452
|
+
|
|
453
|
+
|
|
454
|
+
def _swig_add_metaclass(metaclass):
|
|
455
|
+
"""Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
|
|
456
|
+
def wrapper(cls):
|
|
457
|
+
return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
|
|
458
|
+
return wrapper
|
|
459
|
+
|
|
460
|
+
|
|
461
|
+
class _SwigNonDynamicMeta(type):
|
|
462
|
+
"""Meta class to enforce nondynamic attributes (no new attributes) for a class"""
|
|
463
|
+
__setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
|
|
464
|
+
|
|
465
|
+
|
|
466
|
+
class SwigPyIterator(object):
|
|
467
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
468
|
+
|
|
469
|
+
def __init__(self, *args, **kwargs):
|
|
470
|
+
raise AttributeError("No constructor defined - class is abstract")
|
|
471
|
+
__repr__ = _swig_repr
|
|
472
|
+
__swig_destroy__ = _medpython.delete_SwigPyIterator
|
|
473
|
+
|
|
474
|
+
def value(self):
|
|
475
|
+
return _medpython.SwigPyIterator_value(self)
|
|
476
|
+
|
|
477
|
+
def incr(self, n=1):
|
|
478
|
+
return _medpython.SwigPyIterator_incr(self, n)
|
|
479
|
+
|
|
480
|
+
def decr(self, n=1):
|
|
481
|
+
return _medpython.SwigPyIterator_decr(self, n)
|
|
482
|
+
|
|
483
|
+
def distance(self, x):
|
|
484
|
+
return _medpython.SwigPyIterator_distance(self, x)
|
|
485
|
+
|
|
486
|
+
def equal(self, x):
|
|
487
|
+
return _medpython.SwigPyIterator_equal(self, x)
|
|
488
|
+
|
|
489
|
+
def copy(self):
|
|
490
|
+
return _medpython.SwigPyIterator_copy(self)
|
|
491
|
+
|
|
492
|
+
def next(self):
|
|
493
|
+
return _medpython.SwigPyIterator_next(self)
|
|
494
|
+
|
|
495
|
+
def __next__(self):
|
|
496
|
+
return _medpython.SwigPyIterator___next__(self)
|
|
497
|
+
|
|
498
|
+
def previous(self):
|
|
499
|
+
return _medpython.SwigPyIterator_previous(self)
|
|
500
|
+
|
|
501
|
+
def advance(self, n):
|
|
502
|
+
return _medpython.SwigPyIterator_advance(self, n)
|
|
503
|
+
|
|
504
|
+
def __eq__(self, x):
|
|
505
|
+
return _medpython.SwigPyIterator___eq__(self, x)
|
|
506
|
+
|
|
507
|
+
def __ne__(self, x):
|
|
508
|
+
return _medpython.SwigPyIterator___ne__(self, x)
|
|
509
|
+
|
|
510
|
+
def __iadd__(self, n):
|
|
511
|
+
return _medpython.SwigPyIterator___iadd__(self, n)
|
|
512
|
+
|
|
513
|
+
def __isub__(self, n):
|
|
514
|
+
return _medpython.SwigPyIterator___isub__(self, n)
|
|
515
|
+
|
|
516
|
+
def __add__(self, n):
|
|
517
|
+
return _medpython.SwigPyIterator___add__(self, n)
|
|
518
|
+
|
|
519
|
+
def __sub__(self, *args):
|
|
520
|
+
return _medpython.SwigPyIterator___sub__(self, *args)
|
|
521
|
+
def __iter__(self):
|
|
522
|
+
return self
|
|
523
|
+
|
|
524
|
+
# Register SwigPyIterator in _medpython:
|
|
525
|
+
_medpython.SwigPyIterator_swigregister(SwigPyIterator)
|
|
526
|
+
class BoolVector(object):
|
|
527
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
528
|
+
__repr__ = _swig_repr
|
|
529
|
+
|
|
530
|
+
def iterator(self):
|
|
531
|
+
return _medpython.BoolVector_iterator(self)
|
|
532
|
+
def __iter__(self):
|
|
533
|
+
return self.iterator()
|
|
534
|
+
|
|
535
|
+
def __nonzero__(self):
|
|
536
|
+
return _medpython.BoolVector___nonzero__(self)
|
|
537
|
+
|
|
538
|
+
def __bool__(self):
|
|
539
|
+
return _medpython.BoolVector___bool__(self)
|
|
540
|
+
|
|
541
|
+
def __len__(self):
|
|
542
|
+
return _medpython.BoolVector___len__(self)
|
|
543
|
+
|
|
544
|
+
def __getslice__(self, i, j):
|
|
545
|
+
return _medpython.BoolVector___getslice__(self, i, j)
|
|
546
|
+
|
|
547
|
+
def __setslice__(self, *args):
|
|
548
|
+
return _medpython.BoolVector___setslice__(self, *args)
|
|
549
|
+
|
|
550
|
+
def __delslice__(self, i, j):
|
|
551
|
+
return _medpython.BoolVector___delslice__(self, i, j)
|
|
552
|
+
|
|
553
|
+
def __delitem__(self, *args):
|
|
554
|
+
return _medpython.BoolVector___delitem__(self, *args)
|
|
555
|
+
|
|
556
|
+
def __getitem__(self, *args):
|
|
557
|
+
return _medpython.BoolVector___getitem__(self, *args)
|
|
558
|
+
|
|
559
|
+
def __setitem__(self, *args):
|
|
560
|
+
return _medpython.BoolVector___setitem__(self, *args)
|
|
561
|
+
|
|
562
|
+
def pop(self):
|
|
563
|
+
return _medpython.BoolVector_pop(self)
|
|
564
|
+
|
|
565
|
+
def append(self, x):
|
|
566
|
+
return _medpython.BoolVector_append(self, x)
|
|
567
|
+
|
|
568
|
+
def empty(self):
|
|
569
|
+
return _medpython.BoolVector_empty(self)
|
|
570
|
+
|
|
571
|
+
def size(self):
|
|
572
|
+
return _medpython.BoolVector_size(self)
|
|
573
|
+
|
|
574
|
+
def swap(self, v):
|
|
575
|
+
return _medpython.BoolVector_swap(self, v)
|
|
576
|
+
|
|
577
|
+
def begin(self):
|
|
578
|
+
return _medpython.BoolVector_begin(self)
|
|
579
|
+
|
|
580
|
+
def end(self):
|
|
581
|
+
return _medpython.BoolVector_end(self)
|
|
582
|
+
|
|
583
|
+
def rbegin(self):
|
|
584
|
+
return _medpython.BoolVector_rbegin(self)
|
|
585
|
+
|
|
586
|
+
def rend(self):
|
|
587
|
+
return _medpython.BoolVector_rend(self)
|
|
588
|
+
|
|
589
|
+
def clear(self):
|
|
590
|
+
return _medpython.BoolVector_clear(self)
|
|
591
|
+
|
|
592
|
+
def get_allocator(self):
|
|
593
|
+
return _medpython.BoolVector_get_allocator(self)
|
|
594
|
+
|
|
595
|
+
def pop_back(self):
|
|
596
|
+
return _medpython.BoolVector_pop_back(self)
|
|
597
|
+
|
|
598
|
+
def erase(self, *args):
|
|
599
|
+
return _medpython.BoolVector_erase(self, *args)
|
|
600
|
+
|
|
601
|
+
def __init__(self, *args):
|
|
602
|
+
_medpython.BoolVector_swiginit(self, _medpython.new_BoolVector(*args))
|
|
603
|
+
|
|
604
|
+
def push_back(self, x):
|
|
605
|
+
return _medpython.BoolVector_push_back(self, x)
|
|
606
|
+
|
|
607
|
+
def front(self):
|
|
608
|
+
return _medpython.BoolVector_front(self)
|
|
609
|
+
|
|
610
|
+
def back(self):
|
|
611
|
+
return _medpython.BoolVector_back(self)
|
|
612
|
+
|
|
613
|
+
def assign(self, n, x):
|
|
614
|
+
return _medpython.BoolVector_assign(self, n, x)
|
|
615
|
+
|
|
616
|
+
def resize(self, *args):
|
|
617
|
+
return _medpython.BoolVector_resize(self, *args)
|
|
618
|
+
|
|
619
|
+
def insert(self, *args):
|
|
620
|
+
return _medpython.BoolVector_insert(self, *args)
|
|
621
|
+
|
|
622
|
+
def reserve(self, n):
|
|
623
|
+
return _medpython.BoolVector_reserve(self, n)
|
|
624
|
+
|
|
625
|
+
def capacity(self):
|
|
626
|
+
return _medpython.BoolVector_capacity(self)
|
|
627
|
+
__swig_destroy__ = _medpython.delete_BoolVector
|
|
628
|
+
|
|
629
|
+
# Register BoolVector in _medpython:
|
|
630
|
+
_medpython.BoolVector_swigregister(BoolVector)
|
|
631
|
+
class IntVector(object):
|
|
632
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
633
|
+
__repr__ = _swig_repr
|
|
634
|
+
|
|
635
|
+
def iterator(self):
|
|
636
|
+
return _medpython.IntVector_iterator(self)
|
|
637
|
+
def __iter__(self):
|
|
638
|
+
return self.iterator()
|
|
639
|
+
|
|
640
|
+
def __nonzero__(self):
|
|
641
|
+
return _medpython.IntVector___nonzero__(self)
|
|
642
|
+
|
|
643
|
+
def __bool__(self):
|
|
644
|
+
return _medpython.IntVector___bool__(self)
|
|
645
|
+
|
|
646
|
+
def __len__(self):
|
|
647
|
+
return _medpython.IntVector___len__(self)
|
|
648
|
+
|
|
649
|
+
def __getslice__(self, i, j):
|
|
650
|
+
return _medpython.IntVector___getslice__(self, i, j)
|
|
651
|
+
|
|
652
|
+
def __setslice__(self, *args):
|
|
653
|
+
return _medpython.IntVector___setslice__(self, *args)
|
|
654
|
+
|
|
655
|
+
def __delslice__(self, i, j):
|
|
656
|
+
return _medpython.IntVector___delslice__(self, i, j)
|
|
657
|
+
|
|
658
|
+
def __delitem__(self, *args):
|
|
659
|
+
return _medpython.IntVector___delitem__(self, *args)
|
|
660
|
+
|
|
661
|
+
def __getitem__(self, *args):
|
|
662
|
+
return _medpython.IntVector___getitem__(self, *args)
|
|
663
|
+
|
|
664
|
+
def __setitem__(self, *args):
|
|
665
|
+
return _medpython.IntVector___setitem__(self, *args)
|
|
666
|
+
|
|
667
|
+
def pop(self):
|
|
668
|
+
return _medpython.IntVector_pop(self)
|
|
669
|
+
|
|
670
|
+
def append(self, x):
|
|
671
|
+
return _medpython.IntVector_append(self, x)
|
|
672
|
+
|
|
673
|
+
def empty(self):
|
|
674
|
+
return _medpython.IntVector_empty(self)
|
|
675
|
+
|
|
676
|
+
def size(self):
|
|
677
|
+
return _medpython.IntVector_size(self)
|
|
678
|
+
|
|
679
|
+
def swap(self, v):
|
|
680
|
+
return _medpython.IntVector_swap(self, v)
|
|
681
|
+
|
|
682
|
+
def begin(self):
|
|
683
|
+
return _medpython.IntVector_begin(self)
|
|
684
|
+
|
|
685
|
+
def end(self):
|
|
686
|
+
return _medpython.IntVector_end(self)
|
|
687
|
+
|
|
688
|
+
def rbegin(self):
|
|
689
|
+
return _medpython.IntVector_rbegin(self)
|
|
690
|
+
|
|
691
|
+
def rend(self):
|
|
692
|
+
return _medpython.IntVector_rend(self)
|
|
693
|
+
|
|
694
|
+
def clear(self):
|
|
695
|
+
return _medpython.IntVector_clear(self)
|
|
696
|
+
|
|
697
|
+
def get_allocator(self):
|
|
698
|
+
return _medpython.IntVector_get_allocator(self)
|
|
699
|
+
|
|
700
|
+
def pop_back(self):
|
|
701
|
+
return _medpython.IntVector_pop_back(self)
|
|
702
|
+
|
|
703
|
+
def erase(self, *args):
|
|
704
|
+
return _medpython.IntVector_erase(self, *args)
|
|
705
|
+
|
|
706
|
+
def __init__(self, *args):
|
|
707
|
+
_medpython.IntVector_swiginit(self, _medpython.new_IntVector(*args))
|
|
708
|
+
|
|
709
|
+
def push_back(self, x):
|
|
710
|
+
return _medpython.IntVector_push_back(self, x)
|
|
711
|
+
|
|
712
|
+
def front(self):
|
|
713
|
+
return _medpython.IntVector_front(self)
|
|
714
|
+
|
|
715
|
+
def back(self):
|
|
716
|
+
return _medpython.IntVector_back(self)
|
|
717
|
+
|
|
718
|
+
def assign(self, n, x):
|
|
719
|
+
return _medpython.IntVector_assign(self, n, x)
|
|
720
|
+
|
|
721
|
+
def resize(self, *args):
|
|
722
|
+
return _medpython.IntVector_resize(self, *args)
|
|
723
|
+
|
|
724
|
+
def insert(self, *args):
|
|
725
|
+
return _medpython.IntVector_insert(self, *args)
|
|
726
|
+
|
|
727
|
+
def reserve(self, n):
|
|
728
|
+
return _medpython.IntVector_reserve(self, n)
|
|
729
|
+
|
|
730
|
+
def capacity(self):
|
|
731
|
+
return _medpython.IntVector_capacity(self)
|
|
732
|
+
__swig_destroy__ = _medpython.delete_IntVector
|
|
733
|
+
|
|
734
|
+
# Register IntVector in _medpython:
|
|
735
|
+
_medpython.IntVector_swigregister(IntVector)
|
|
736
|
+
class CharVector(object):
|
|
737
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
738
|
+
__repr__ = _swig_repr
|
|
739
|
+
|
|
740
|
+
def iterator(self):
|
|
741
|
+
return _medpython.CharVector_iterator(self)
|
|
742
|
+
def __iter__(self):
|
|
743
|
+
return self.iterator()
|
|
744
|
+
|
|
745
|
+
def __nonzero__(self):
|
|
746
|
+
return _medpython.CharVector___nonzero__(self)
|
|
747
|
+
|
|
748
|
+
def __bool__(self):
|
|
749
|
+
return _medpython.CharVector___bool__(self)
|
|
750
|
+
|
|
751
|
+
def __len__(self):
|
|
752
|
+
return _medpython.CharVector___len__(self)
|
|
753
|
+
|
|
754
|
+
def __getslice__(self, i, j):
|
|
755
|
+
return _medpython.CharVector___getslice__(self, i, j)
|
|
756
|
+
|
|
757
|
+
def __setslice__(self, *args):
|
|
758
|
+
return _medpython.CharVector___setslice__(self, *args)
|
|
759
|
+
|
|
760
|
+
def __delslice__(self, i, j):
|
|
761
|
+
return _medpython.CharVector___delslice__(self, i, j)
|
|
762
|
+
|
|
763
|
+
def __delitem__(self, *args):
|
|
764
|
+
return _medpython.CharVector___delitem__(self, *args)
|
|
765
|
+
|
|
766
|
+
def __getitem__(self, *args):
|
|
767
|
+
return _medpython.CharVector___getitem__(self, *args)
|
|
768
|
+
|
|
769
|
+
def __setitem__(self, *args):
|
|
770
|
+
return _medpython.CharVector___setitem__(self, *args)
|
|
771
|
+
|
|
772
|
+
def pop(self):
|
|
773
|
+
return _medpython.CharVector_pop(self)
|
|
774
|
+
|
|
775
|
+
def append(self, x):
|
|
776
|
+
return _medpython.CharVector_append(self, x)
|
|
777
|
+
|
|
778
|
+
def empty(self):
|
|
779
|
+
return _medpython.CharVector_empty(self)
|
|
780
|
+
|
|
781
|
+
def size(self):
|
|
782
|
+
return _medpython.CharVector_size(self)
|
|
783
|
+
|
|
784
|
+
def swap(self, v):
|
|
785
|
+
return _medpython.CharVector_swap(self, v)
|
|
786
|
+
|
|
787
|
+
def begin(self):
|
|
788
|
+
return _medpython.CharVector_begin(self)
|
|
789
|
+
|
|
790
|
+
def end(self):
|
|
791
|
+
return _medpython.CharVector_end(self)
|
|
792
|
+
|
|
793
|
+
def rbegin(self):
|
|
794
|
+
return _medpython.CharVector_rbegin(self)
|
|
795
|
+
|
|
796
|
+
def rend(self):
|
|
797
|
+
return _medpython.CharVector_rend(self)
|
|
798
|
+
|
|
799
|
+
def clear(self):
|
|
800
|
+
return _medpython.CharVector_clear(self)
|
|
801
|
+
|
|
802
|
+
def get_allocator(self):
|
|
803
|
+
return _medpython.CharVector_get_allocator(self)
|
|
804
|
+
|
|
805
|
+
def pop_back(self):
|
|
806
|
+
return _medpython.CharVector_pop_back(self)
|
|
807
|
+
|
|
808
|
+
def erase(self, *args):
|
|
809
|
+
return _medpython.CharVector_erase(self, *args)
|
|
810
|
+
|
|
811
|
+
def __init__(self, *args):
|
|
812
|
+
_medpython.CharVector_swiginit(self, _medpython.new_CharVector(*args))
|
|
813
|
+
|
|
814
|
+
def push_back(self, x):
|
|
815
|
+
return _medpython.CharVector_push_back(self, x)
|
|
816
|
+
|
|
817
|
+
def front(self):
|
|
818
|
+
return _medpython.CharVector_front(self)
|
|
819
|
+
|
|
820
|
+
def back(self):
|
|
821
|
+
return _medpython.CharVector_back(self)
|
|
822
|
+
|
|
823
|
+
def assign(self, n, x):
|
|
824
|
+
return _medpython.CharVector_assign(self, n, x)
|
|
825
|
+
|
|
826
|
+
def resize(self, *args):
|
|
827
|
+
return _medpython.CharVector_resize(self, *args)
|
|
828
|
+
|
|
829
|
+
def insert(self, *args):
|
|
830
|
+
return _medpython.CharVector_insert(self, *args)
|
|
831
|
+
|
|
832
|
+
def reserve(self, n):
|
|
833
|
+
return _medpython.CharVector_reserve(self, n)
|
|
834
|
+
|
|
835
|
+
def capacity(self):
|
|
836
|
+
return _medpython.CharVector_capacity(self)
|
|
837
|
+
__swig_destroy__ = _medpython.delete_CharVector
|
|
838
|
+
|
|
839
|
+
# Register CharVector in _medpython:
|
|
840
|
+
_medpython.CharVector_swigregister(CharVector)
|
|
841
|
+
class DoubleVector(object):
|
|
842
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
843
|
+
__repr__ = _swig_repr
|
|
844
|
+
|
|
845
|
+
def iterator(self):
|
|
846
|
+
return _medpython.DoubleVector_iterator(self)
|
|
847
|
+
def __iter__(self):
|
|
848
|
+
return self.iterator()
|
|
849
|
+
|
|
850
|
+
def __nonzero__(self):
|
|
851
|
+
return _medpython.DoubleVector___nonzero__(self)
|
|
852
|
+
|
|
853
|
+
def __bool__(self):
|
|
854
|
+
return _medpython.DoubleVector___bool__(self)
|
|
855
|
+
|
|
856
|
+
def __len__(self):
|
|
857
|
+
return _medpython.DoubleVector___len__(self)
|
|
858
|
+
|
|
859
|
+
def __getslice__(self, i, j):
|
|
860
|
+
return _medpython.DoubleVector___getslice__(self, i, j)
|
|
861
|
+
|
|
862
|
+
def __setslice__(self, *args):
|
|
863
|
+
return _medpython.DoubleVector___setslice__(self, *args)
|
|
864
|
+
|
|
865
|
+
def __delslice__(self, i, j):
|
|
866
|
+
return _medpython.DoubleVector___delslice__(self, i, j)
|
|
867
|
+
|
|
868
|
+
def __delitem__(self, *args):
|
|
869
|
+
return _medpython.DoubleVector___delitem__(self, *args)
|
|
870
|
+
|
|
871
|
+
def __getitem__(self, *args):
|
|
872
|
+
return _medpython.DoubleVector___getitem__(self, *args)
|
|
873
|
+
|
|
874
|
+
def __setitem__(self, *args):
|
|
875
|
+
return _medpython.DoubleVector___setitem__(self, *args)
|
|
876
|
+
|
|
877
|
+
def pop(self):
|
|
878
|
+
return _medpython.DoubleVector_pop(self)
|
|
879
|
+
|
|
880
|
+
def append(self, x):
|
|
881
|
+
return _medpython.DoubleVector_append(self, x)
|
|
882
|
+
|
|
883
|
+
def empty(self):
|
|
884
|
+
return _medpython.DoubleVector_empty(self)
|
|
885
|
+
|
|
886
|
+
def size(self):
|
|
887
|
+
return _medpython.DoubleVector_size(self)
|
|
888
|
+
|
|
889
|
+
def swap(self, v):
|
|
890
|
+
return _medpython.DoubleVector_swap(self, v)
|
|
891
|
+
|
|
892
|
+
def begin(self):
|
|
893
|
+
return _medpython.DoubleVector_begin(self)
|
|
894
|
+
|
|
895
|
+
def end(self):
|
|
896
|
+
return _medpython.DoubleVector_end(self)
|
|
897
|
+
|
|
898
|
+
def rbegin(self):
|
|
899
|
+
return _medpython.DoubleVector_rbegin(self)
|
|
900
|
+
|
|
901
|
+
def rend(self):
|
|
902
|
+
return _medpython.DoubleVector_rend(self)
|
|
903
|
+
|
|
904
|
+
def clear(self):
|
|
905
|
+
return _medpython.DoubleVector_clear(self)
|
|
906
|
+
|
|
907
|
+
def get_allocator(self):
|
|
908
|
+
return _medpython.DoubleVector_get_allocator(self)
|
|
909
|
+
|
|
910
|
+
def pop_back(self):
|
|
911
|
+
return _medpython.DoubleVector_pop_back(self)
|
|
912
|
+
|
|
913
|
+
def erase(self, *args):
|
|
914
|
+
return _medpython.DoubleVector_erase(self, *args)
|
|
915
|
+
|
|
916
|
+
def __init__(self, *args):
|
|
917
|
+
_medpython.DoubleVector_swiginit(self, _medpython.new_DoubleVector(*args))
|
|
918
|
+
|
|
919
|
+
def push_back(self, x):
|
|
920
|
+
return _medpython.DoubleVector_push_back(self, x)
|
|
921
|
+
|
|
922
|
+
def front(self):
|
|
923
|
+
return _medpython.DoubleVector_front(self)
|
|
924
|
+
|
|
925
|
+
def back(self):
|
|
926
|
+
return _medpython.DoubleVector_back(self)
|
|
927
|
+
|
|
928
|
+
def assign(self, n, x):
|
|
929
|
+
return _medpython.DoubleVector_assign(self, n, x)
|
|
930
|
+
|
|
931
|
+
def resize(self, *args):
|
|
932
|
+
return _medpython.DoubleVector_resize(self, *args)
|
|
933
|
+
|
|
934
|
+
def insert(self, *args):
|
|
935
|
+
return _medpython.DoubleVector_insert(self, *args)
|
|
936
|
+
|
|
937
|
+
def reserve(self, n):
|
|
938
|
+
return _medpython.DoubleVector_reserve(self, n)
|
|
939
|
+
|
|
940
|
+
def capacity(self):
|
|
941
|
+
return _medpython.DoubleVector_capacity(self)
|
|
942
|
+
__swig_destroy__ = _medpython.delete_DoubleVector
|
|
943
|
+
|
|
944
|
+
# Register DoubleVector in _medpython:
|
|
945
|
+
_medpython.DoubleVector_swigregister(DoubleVector)
|
|
946
|
+
class StringVector(object):
|
|
947
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
948
|
+
__repr__ = _swig_repr
|
|
949
|
+
|
|
950
|
+
def iterator(self):
|
|
951
|
+
return _medpython.StringVector_iterator(self)
|
|
952
|
+
def __iter__(self):
|
|
953
|
+
return self.iterator()
|
|
954
|
+
|
|
955
|
+
def __nonzero__(self):
|
|
956
|
+
return _medpython.StringVector___nonzero__(self)
|
|
957
|
+
|
|
958
|
+
def __bool__(self):
|
|
959
|
+
return _medpython.StringVector___bool__(self)
|
|
960
|
+
|
|
961
|
+
def __len__(self):
|
|
962
|
+
return _medpython.StringVector___len__(self)
|
|
963
|
+
|
|
964
|
+
def __getslice__(self, i, j):
|
|
965
|
+
return _medpython.StringVector___getslice__(self, i, j)
|
|
966
|
+
|
|
967
|
+
def __setslice__(self, *args):
|
|
968
|
+
return _medpython.StringVector___setslice__(self, *args)
|
|
969
|
+
|
|
970
|
+
def __delslice__(self, i, j):
|
|
971
|
+
return _medpython.StringVector___delslice__(self, i, j)
|
|
972
|
+
|
|
973
|
+
def __delitem__(self, *args):
|
|
974
|
+
return _medpython.StringVector___delitem__(self, *args)
|
|
975
|
+
|
|
976
|
+
def __getitem__(self, *args):
|
|
977
|
+
return _medpython.StringVector___getitem__(self, *args)
|
|
978
|
+
|
|
979
|
+
def __setitem__(self, *args):
|
|
980
|
+
return _medpython.StringVector___setitem__(self, *args)
|
|
981
|
+
|
|
982
|
+
def pop(self):
|
|
983
|
+
return _medpython.StringVector_pop(self)
|
|
984
|
+
|
|
985
|
+
def append(self, x):
|
|
986
|
+
return _medpython.StringVector_append(self, x)
|
|
987
|
+
|
|
988
|
+
def empty(self):
|
|
989
|
+
return _medpython.StringVector_empty(self)
|
|
990
|
+
|
|
991
|
+
def size(self):
|
|
992
|
+
return _medpython.StringVector_size(self)
|
|
993
|
+
|
|
994
|
+
def swap(self, v):
|
|
995
|
+
return _medpython.StringVector_swap(self, v)
|
|
996
|
+
|
|
997
|
+
def begin(self):
|
|
998
|
+
return _medpython.StringVector_begin(self)
|
|
999
|
+
|
|
1000
|
+
def end(self):
|
|
1001
|
+
return _medpython.StringVector_end(self)
|
|
1002
|
+
|
|
1003
|
+
def rbegin(self):
|
|
1004
|
+
return _medpython.StringVector_rbegin(self)
|
|
1005
|
+
|
|
1006
|
+
def rend(self):
|
|
1007
|
+
return _medpython.StringVector_rend(self)
|
|
1008
|
+
|
|
1009
|
+
def clear(self):
|
|
1010
|
+
return _medpython.StringVector_clear(self)
|
|
1011
|
+
|
|
1012
|
+
def get_allocator(self):
|
|
1013
|
+
return _medpython.StringVector_get_allocator(self)
|
|
1014
|
+
|
|
1015
|
+
def pop_back(self):
|
|
1016
|
+
return _medpython.StringVector_pop_back(self)
|
|
1017
|
+
|
|
1018
|
+
def erase(self, *args):
|
|
1019
|
+
return _medpython.StringVector_erase(self, *args)
|
|
1020
|
+
|
|
1021
|
+
def __init__(self, *args):
|
|
1022
|
+
_medpython.StringVector_swiginit(self, _medpython.new_StringVector(*args))
|
|
1023
|
+
|
|
1024
|
+
def push_back(self, x):
|
|
1025
|
+
return _medpython.StringVector_push_back(self, x)
|
|
1026
|
+
|
|
1027
|
+
def front(self):
|
|
1028
|
+
return _medpython.StringVector_front(self)
|
|
1029
|
+
|
|
1030
|
+
def back(self):
|
|
1031
|
+
return _medpython.StringVector_back(self)
|
|
1032
|
+
|
|
1033
|
+
def assign(self, n, x):
|
|
1034
|
+
return _medpython.StringVector_assign(self, n, x)
|
|
1035
|
+
|
|
1036
|
+
def resize(self, *args):
|
|
1037
|
+
return _medpython.StringVector_resize(self, *args)
|
|
1038
|
+
|
|
1039
|
+
def insert(self, *args):
|
|
1040
|
+
return _medpython.StringVector_insert(self, *args)
|
|
1041
|
+
|
|
1042
|
+
def reserve(self, n):
|
|
1043
|
+
return _medpython.StringVector_reserve(self, n)
|
|
1044
|
+
|
|
1045
|
+
def capacity(self):
|
|
1046
|
+
return _medpython.StringVector_capacity(self)
|
|
1047
|
+
__swig_destroy__ = _medpython.delete_StringVector
|
|
1048
|
+
|
|
1049
|
+
# Register StringVector in _medpython:
|
|
1050
|
+
_medpython.StringVector_swigregister(StringVector)
|
|
1051
|
+
class FloatVector(object):
|
|
1052
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1053
|
+
__repr__ = _swig_repr
|
|
1054
|
+
|
|
1055
|
+
def iterator(self):
|
|
1056
|
+
return _medpython.FloatVector_iterator(self)
|
|
1057
|
+
def __iter__(self):
|
|
1058
|
+
return self.iterator()
|
|
1059
|
+
|
|
1060
|
+
def __nonzero__(self):
|
|
1061
|
+
return _medpython.FloatVector___nonzero__(self)
|
|
1062
|
+
|
|
1063
|
+
def __bool__(self):
|
|
1064
|
+
return _medpython.FloatVector___bool__(self)
|
|
1065
|
+
|
|
1066
|
+
def __len__(self):
|
|
1067
|
+
return _medpython.FloatVector___len__(self)
|
|
1068
|
+
|
|
1069
|
+
def __getslice__(self, i, j):
|
|
1070
|
+
return _medpython.FloatVector___getslice__(self, i, j)
|
|
1071
|
+
|
|
1072
|
+
def __setslice__(self, *args):
|
|
1073
|
+
return _medpython.FloatVector___setslice__(self, *args)
|
|
1074
|
+
|
|
1075
|
+
def __delslice__(self, i, j):
|
|
1076
|
+
return _medpython.FloatVector___delslice__(self, i, j)
|
|
1077
|
+
|
|
1078
|
+
def __delitem__(self, *args):
|
|
1079
|
+
return _medpython.FloatVector___delitem__(self, *args)
|
|
1080
|
+
|
|
1081
|
+
def __getitem__(self, *args):
|
|
1082
|
+
return _medpython.FloatVector___getitem__(self, *args)
|
|
1083
|
+
|
|
1084
|
+
def __setitem__(self, *args):
|
|
1085
|
+
return _medpython.FloatVector___setitem__(self, *args)
|
|
1086
|
+
|
|
1087
|
+
def pop(self):
|
|
1088
|
+
return _medpython.FloatVector_pop(self)
|
|
1089
|
+
|
|
1090
|
+
def append(self, x):
|
|
1091
|
+
return _medpython.FloatVector_append(self, x)
|
|
1092
|
+
|
|
1093
|
+
def empty(self):
|
|
1094
|
+
return _medpython.FloatVector_empty(self)
|
|
1095
|
+
|
|
1096
|
+
def size(self):
|
|
1097
|
+
return _medpython.FloatVector_size(self)
|
|
1098
|
+
|
|
1099
|
+
def swap(self, v):
|
|
1100
|
+
return _medpython.FloatVector_swap(self, v)
|
|
1101
|
+
|
|
1102
|
+
def begin(self):
|
|
1103
|
+
return _medpython.FloatVector_begin(self)
|
|
1104
|
+
|
|
1105
|
+
def end(self):
|
|
1106
|
+
return _medpython.FloatVector_end(self)
|
|
1107
|
+
|
|
1108
|
+
def rbegin(self):
|
|
1109
|
+
return _medpython.FloatVector_rbegin(self)
|
|
1110
|
+
|
|
1111
|
+
def rend(self):
|
|
1112
|
+
return _medpython.FloatVector_rend(self)
|
|
1113
|
+
|
|
1114
|
+
def clear(self):
|
|
1115
|
+
return _medpython.FloatVector_clear(self)
|
|
1116
|
+
|
|
1117
|
+
def get_allocator(self):
|
|
1118
|
+
return _medpython.FloatVector_get_allocator(self)
|
|
1119
|
+
|
|
1120
|
+
def pop_back(self):
|
|
1121
|
+
return _medpython.FloatVector_pop_back(self)
|
|
1122
|
+
|
|
1123
|
+
def erase(self, *args):
|
|
1124
|
+
return _medpython.FloatVector_erase(self, *args)
|
|
1125
|
+
|
|
1126
|
+
def __init__(self, *args):
|
|
1127
|
+
_medpython.FloatVector_swiginit(self, _medpython.new_FloatVector(*args))
|
|
1128
|
+
|
|
1129
|
+
def push_back(self, x):
|
|
1130
|
+
return _medpython.FloatVector_push_back(self, x)
|
|
1131
|
+
|
|
1132
|
+
def front(self):
|
|
1133
|
+
return _medpython.FloatVector_front(self)
|
|
1134
|
+
|
|
1135
|
+
def back(self):
|
|
1136
|
+
return _medpython.FloatVector_back(self)
|
|
1137
|
+
|
|
1138
|
+
def assign(self, n, x):
|
|
1139
|
+
return _medpython.FloatVector_assign(self, n, x)
|
|
1140
|
+
|
|
1141
|
+
def resize(self, *args):
|
|
1142
|
+
return _medpython.FloatVector_resize(self, *args)
|
|
1143
|
+
|
|
1144
|
+
def insert(self, *args):
|
|
1145
|
+
return _medpython.FloatVector_insert(self, *args)
|
|
1146
|
+
|
|
1147
|
+
def reserve(self, n):
|
|
1148
|
+
return _medpython.FloatVector_reserve(self, n)
|
|
1149
|
+
|
|
1150
|
+
def capacity(self):
|
|
1151
|
+
return _medpython.FloatVector_capacity(self)
|
|
1152
|
+
__swig_destroy__ = _medpython.delete_FloatVector
|
|
1153
|
+
|
|
1154
|
+
# Register FloatVector in _medpython:
|
|
1155
|
+
_medpython.FloatVector_swigregister(FloatVector)
|
|
1156
|
+
class StopIterator(object):
|
|
1157
|
+
r"""Proxy of C++ StopIterator class."""
|
|
1158
|
+
|
|
1159
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1160
|
+
__repr__ = _swig_repr
|
|
1161
|
+
|
|
1162
|
+
def __init__(self):
|
|
1163
|
+
r"""__init__(StopIterator self) -> StopIterator"""
|
|
1164
|
+
_medpython.StopIterator_swiginit(self, _medpython.new_StopIterator())
|
|
1165
|
+
__swig_destroy__ = _medpython.delete_StopIterator
|
|
1166
|
+
|
|
1167
|
+
# Register StopIterator in _medpython:
|
|
1168
|
+
_medpython.StopIterator_swigregister(StopIterator)
|
|
1169
|
+
class IntIntMapAdaptor(object):
|
|
1170
|
+
r"""Proxy of C++ MPIntIntMapAdaptor class."""
|
|
1171
|
+
|
|
1172
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1173
|
+
__repr__ = _swig_repr
|
|
1174
|
+
|
|
1175
|
+
def __init__(self):
|
|
1176
|
+
r"""__init__(IntIntMapAdaptor self) -> IntIntMapAdaptor"""
|
|
1177
|
+
_medpython.IntIntMapAdaptor_swiginit(self, _medpython.new_IntIntMapAdaptor())
|
|
1178
|
+
__swig_destroy__ = _medpython.delete_IntIntMapAdaptor
|
|
1179
|
+
|
|
1180
|
+
def __len__(self):
|
|
1181
|
+
r"""__len__(IntIntMapAdaptor self) -> int"""
|
|
1182
|
+
return _medpython.IntIntMapAdaptor___len__(self)
|
|
1183
|
+
|
|
1184
|
+
def __getitem__(self, i):
|
|
1185
|
+
r"""__getitem__(IntIntMapAdaptor self, int i) -> int"""
|
|
1186
|
+
return _medpython.IntIntMapAdaptor___getitem__(self, i)
|
|
1187
|
+
|
|
1188
|
+
def __setitem__(self, i, val):
|
|
1189
|
+
r"""__setitem__(IntIntMapAdaptor self, int i, int val)"""
|
|
1190
|
+
return _medpython.IntIntMapAdaptor___setitem__(self, i, val)
|
|
1191
|
+
|
|
1192
|
+
def keys(self):
|
|
1193
|
+
r"""keys(IntIntMapAdaptor self)"""
|
|
1194
|
+
return _medpython.IntIntMapAdaptor_keys(self)
|
|
1195
|
+
|
|
1196
|
+
# Register IntIntMapAdaptor in _medpython:
|
|
1197
|
+
_medpython.IntIntMapAdaptor_swigregister(IntIntMapAdaptor)
|
|
1198
|
+
class StringStringMapAdaptor(object):
|
|
1199
|
+
r"""Proxy of C++ MPStringStringMapAdaptor class."""
|
|
1200
|
+
|
|
1201
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1202
|
+
__repr__ = _swig_repr
|
|
1203
|
+
|
|
1204
|
+
def __init__(self):
|
|
1205
|
+
r"""__init__(StringStringMapAdaptor self) -> StringStringMapAdaptor"""
|
|
1206
|
+
_medpython.StringStringMapAdaptor_swiginit(self, _medpython.new_StringStringMapAdaptor())
|
|
1207
|
+
__swig_destroy__ = _medpython.delete_StringStringMapAdaptor
|
|
1208
|
+
|
|
1209
|
+
def __len__(self):
|
|
1210
|
+
r"""__len__(StringStringMapAdaptor self) -> int"""
|
|
1211
|
+
return _medpython.StringStringMapAdaptor___len__(self)
|
|
1212
|
+
|
|
1213
|
+
def __getitem__(self, i):
|
|
1214
|
+
r"""__getitem__(StringStringMapAdaptor self, std::string const & i) -> std::string"""
|
|
1215
|
+
return _medpython.StringStringMapAdaptor___getitem__(self, i)
|
|
1216
|
+
|
|
1217
|
+
def __setitem__(self, i, val):
|
|
1218
|
+
r"""__setitem__(StringStringMapAdaptor self, std::string const & i, std::string const & val)"""
|
|
1219
|
+
return _medpython.StringStringMapAdaptor___setitem__(self, i, val)
|
|
1220
|
+
|
|
1221
|
+
def keys(self):
|
|
1222
|
+
r"""keys(StringStringMapAdaptor self) -> StringVector"""
|
|
1223
|
+
return _medpython.StringStringMapAdaptor_keys(self)
|
|
1224
|
+
|
|
1225
|
+
# Register StringStringMapAdaptor in _medpython:
|
|
1226
|
+
_medpython.StringStringMapAdaptor_swigregister(StringStringMapAdaptor)
|
|
1227
|
+
class StringFloatMapAdaptor(object):
|
|
1228
|
+
r"""Proxy of C++ MPStringFloatMapAdaptor class."""
|
|
1229
|
+
|
|
1230
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1231
|
+
__repr__ = _swig_repr
|
|
1232
|
+
|
|
1233
|
+
def __init__(self):
|
|
1234
|
+
r"""__init__(StringFloatMapAdaptor self) -> StringFloatMapAdaptor"""
|
|
1235
|
+
_medpython.StringFloatMapAdaptor_swiginit(self, _medpython.new_StringFloatMapAdaptor())
|
|
1236
|
+
__swig_destroy__ = _medpython.delete_StringFloatMapAdaptor
|
|
1237
|
+
|
|
1238
|
+
def __len__(self):
|
|
1239
|
+
r"""__len__(StringFloatMapAdaptor self) -> int"""
|
|
1240
|
+
return _medpython.StringFloatMapAdaptor___len__(self)
|
|
1241
|
+
|
|
1242
|
+
def __getitem__(self, i):
|
|
1243
|
+
r"""__getitem__(StringFloatMapAdaptor self, std::string const & i) -> float"""
|
|
1244
|
+
return _medpython.StringFloatMapAdaptor___getitem__(self, i)
|
|
1245
|
+
|
|
1246
|
+
def __setitem__(self, i, val):
|
|
1247
|
+
r"""__setitem__(StringFloatMapAdaptor self, std::string const & i, float val)"""
|
|
1248
|
+
return _medpython.StringFloatMapAdaptor___setitem__(self, i, val)
|
|
1249
|
+
|
|
1250
|
+
def keys(self):
|
|
1251
|
+
r"""keys(StringFloatMapAdaptor self) -> StringVector"""
|
|
1252
|
+
return _medpython.StringFloatMapAdaptor_keys(self)
|
|
1253
|
+
|
|
1254
|
+
# Register StringFloatMapAdaptor in _medpython:
|
|
1255
|
+
_medpython.StringFloatMapAdaptor_swigregister(StringFloatMapAdaptor)
|
|
1256
|
+
class StringVecFloatMapAdaptor(object):
|
|
1257
|
+
r"""Proxy of C++ MPStringVecFloatMapAdaptor class."""
|
|
1258
|
+
|
|
1259
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1260
|
+
__repr__ = _swig_repr
|
|
1261
|
+
|
|
1262
|
+
def __init__(self):
|
|
1263
|
+
r"""__init__(StringVecFloatMapAdaptor self) -> StringVecFloatMapAdaptor"""
|
|
1264
|
+
_medpython.StringVecFloatMapAdaptor_swiginit(self, _medpython.new_StringVecFloatMapAdaptor())
|
|
1265
|
+
__swig_destroy__ = _medpython.delete_StringVecFloatMapAdaptor
|
|
1266
|
+
|
|
1267
|
+
def __len__(self):
|
|
1268
|
+
r"""__len__(StringVecFloatMapAdaptor self) -> int"""
|
|
1269
|
+
return _medpython.StringVecFloatMapAdaptor___len__(self)
|
|
1270
|
+
|
|
1271
|
+
def __getitem__(self, key):
|
|
1272
|
+
r"""__getitem__(StringVecFloatMapAdaptor self, std::string key)"""
|
|
1273
|
+
return _medpython.StringVecFloatMapAdaptor___getitem__(self, key)
|
|
1274
|
+
|
|
1275
|
+
def __setitem__(self, key, float_in_buf):
|
|
1276
|
+
r"""__setitem__(StringVecFloatMapAdaptor self, std::string key, float * float_in_buf)"""
|
|
1277
|
+
return _medpython.StringVecFloatMapAdaptor___setitem__(self, key, float_in_buf)
|
|
1278
|
+
|
|
1279
|
+
def keys(self):
|
|
1280
|
+
r"""keys(StringVecFloatMapAdaptor self) -> StringVector"""
|
|
1281
|
+
return _medpython.StringVecFloatMapAdaptor_keys(self)
|
|
1282
|
+
|
|
1283
|
+
# Register StringVecFloatMapAdaptor in _medpython:
|
|
1284
|
+
_medpython.StringVecFloatMapAdaptor_swigregister(StringVecFloatMapAdaptor)
|
|
1285
|
+
class IntPairIntIntMapAdaptor(object):
|
|
1286
|
+
r"""Proxy of C++ MPIntPairIntIntMapAdaptor class."""
|
|
1287
|
+
|
|
1288
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1289
|
+
__repr__ = _swig_repr
|
|
1290
|
+
|
|
1291
|
+
def __init__(self):
|
|
1292
|
+
r"""__init__(IntPairIntIntMapAdaptor self) -> IntPairIntIntMapAdaptor"""
|
|
1293
|
+
_medpython.IntPairIntIntMapAdaptor_swiginit(self, _medpython.new_IntPairIntIntMapAdaptor())
|
|
1294
|
+
__swig_destroy__ = _medpython.delete_IntPairIntIntMapAdaptor
|
|
1295
|
+
|
|
1296
|
+
def __len__(self):
|
|
1297
|
+
r"""__len__(IntPairIntIntMapAdaptor self) -> int"""
|
|
1298
|
+
return _medpython.IntPairIntIntMapAdaptor___len__(self)
|
|
1299
|
+
|
|
1300
|
+
def __getitem__(self, key):
|
|
1301
|
+
r"""__getitem__(IntPairIntIntMapAdaptor self, int key)"""
|
|
1302
|
+
return _medpython.IntPairIntIntMapAdaptor___getitem__(self, key)
|
|
1303
|
+
|
|
1304
|
+
def __setitem__(self, key, int_in_buf):
|
|
1305
|
+
r"""__setitem__(IntPairIntIntMapAdaptor self, int key, int * int_in_buf)"""
|
|
1306
|
+
return _medpython.IntPairIntIntMapAdaptor___setitem__(self, key, int_in_buf)
|
|
1307
|
+
|
|
1308
|
+
def keys(self):
|
|
1309
|
+
r"""keys(IntPairIntIntMapAdaptor self)"""
|
|
1310
|
+
return _medpython.IntPairIntIntMapAdaptor_keys(self)
|
|
1311
|
+
|
|
1312
|
+
# Register IntPairIntIntMapAdaptor in _medpython:
|
|
1313
|
+
_medpython.IntPairIntIntMapAdaptor_swigregister(IntPairIntIntMapAdaptor)
|
|
1314
|
+
class StringUOSetStringMapAdaptor(object):
|
|
1315
|
+
r"""Proxy of C++ MPStringUOSetStringMapAdaptor class."""
|
|
1316
|
+
|
|
1317
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1318
|
+
__repr__ = _swig_repr
|
|
1319
|
+
|
|
1320
|
+
def __init__(self):
|
|
1321
|
+
r"""__init__(StringUOSetStringMapAdaptor self) -> StringUOSetStringMapAdaptor"""
|
|
1322
|
+
_medpython.StringUOSetStringMapAdaptor_swiginit(self, _medpython.new_StringUOSetStringMapAdaptor())
|
|
1323
|
+
__swig_destroy__ = _medpython.delete_StringUOSetStringMapAdaptor
|
|
1324
|
+
|
|
1325
|
+
def __len__(self):
|
|
1326
|
+
r"""__len__(StringUOSetStringMapAdaptor self) -> int"""
|
|
1327
|
+
return _medpython.StringUOSetStringMapAdaptor___len__(self)
|
|
1328
|
+
|
|
1329
|
+
def __getitem__(self, key):
|
|
1330
|
+
r"""__getitem__(StringUOSetStringMapAdaptor self, std::string key) -> StringVector"""
|
|
1331
|
+
return _medpython.StringUOSetStringMapAdaptor___getitem__(self, key)
|
|
1332
|
+
|
|
1333
|
+
def __setitem__(self, key, val):
|
|
1334
|
+
r"""__setitem__(StringUOSetStringMapAdaptor self, std::string key, StringVector val)"""
|
|
1335
|
+
return _medpython.StringUOSetStringMapAdaptor___setitem__(self, key, val)
|
|
1336
|
+
|
|
1337
|
+
def keys(self):
|
|
1338
|
+
r"""keys(StringUOSetStringMapAdaptor self) -> StringVector"""
|
|
1339
|
+
return _medpython.StringUOSetStringMapAdaptor_keys(self)
|
|
1340
|
+
|
|
1341
|
+
# Register StringUOSetStringMapAdaptor in _medpython:
|
|
1342
|
+
_medpython.StringUOSetStringMapAdaptor_swigregister(StringUOSetStringMapAdaptor)
|
|
1343
|
+
class IntStringMapAdaptor(object):
|
|
1344
|
+
r"""Proxy of C++ MPIntStringMapAdaptor class."""
|
|
1345
|
+
|
|
1346
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1347
|
+
__repr__ = _swig_repr
|
|
1348
|
+
|
|
1349
|
+
def __init__(self):
|
|
1350
|
+
r"""__init__(IntStringMapAdaptor self) -> IntStringMapAdaptor"""
|
|
1351
|
+
_medpython.IntStringMapAdaptor_swiginit(self, _medpython.new_IntStringMapAdaptor())
|
|
1352
|
+
__swig_destroy__ = _medpython.delete_IntStringMapAdaptor
|
|
1353
|
+
|
|
1354
|
+
def __len__(self):
|
|
1355
|
+
r"""__len__(IntStringMapAdaptor self) -> int"""
|
|
1356
|
+
return _medpython.IntStringMapAdaptor___len__(self)
|
|
1357
|
+
|
|
1358
|
+
def __getitem__(self, i):
|
|
1359
|
+
r"""__getitem__(IntStringMapAdaptor self, int i) -> std::string"""
|
|
1360
|
+
return _medpython.IntStringMapAdaptor___getitem__(self, i)
|
|
1361
|
+
|
|
1362
|
+
def __setitem__(self, i, val):
|
|
1363
|
+
r"""__setitem__(IntStringMapAdaptor self, int i, string const & val)"""
|
|
1364
|
+
return _medpython.IntStringMapAdaptor___setitem__(self, i, val)
|
|
1365
|
+
|
|
1366
|
+
def keys(self):
|
|
1367
|
+
r"""keys(IntStringMapAdaptor self) -> IntVector"""
|
|
1368
|
+
return _medpython.IntStringMapAdaptor_keys(self)
|
|
1369
|
+
|
|
1370
|
+
# Register IntStringMapAdaptor in _medpython:
|
|
1371
|
+
_medpython.IntStringMapAdaptor_swigregister(IntStringMapAdaptor)
|
|
1372
|
+
class IntVecIntMapAdaptor(object):
|
|
1373
|
+
r"""Proxy of C++ MPIntVecIntMapAdaptor class."""
|
|
1374
|
+
|
|
1375
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1376
|
+
__repr__ = _swig_repr
|
|
1377
|
+
o = property(_medpython.IntVecIntMapAdaptor_o_get, _medpython.IntVecIntMapAdaptor_o_set, doc=r"""o : p.std::map<(int,std::vector<(int,std::allocator<(int)>)>)>""")
|
|
1378
|
+
|
|
1379
|
+
def __init__(self):
|
|
1380
|
+
r"""__init__(IntVecIntMapAdaptor self) -> IntVecIntMapAdaptor"""
|
|
1381
|
+
_medpython.IntVecIntMapAdaptor_swiginit(self, _medpython.new_IntVecIntMapAdaptor())
|
|
1382
|
+
__swig_destroy__ = _medpython.delete_IntVecIntMapAdaptor
|
|
1383
|
+
|
|
1384
|
+
def __len__(self):
|
|
1385
|
+
r"""__len__(IntVecIntMapAdaptor self) -> int"""
|
|
1386
|
+
return _medpython.IntVecIntMapAdaptor___len__(self)
|
|
1387
|
+
|
|
1388
|
+
def __getitem__(self, key):
|
|
1389
|
+
r"""__getitem__(IntVecIntMapAdaptor self, int key)"""
|
|
1390
|
+
return _medpython.IntVecIntMapAdaptor___getitem__(self, key)
|
|
1391
|
+
|
|
1392
|
+
def __setitem__(self, key, int_in_buf):
|
|
1393
|
+
r"""__setitem__(IntVecIntMapAdaptor self, int key, int * int_in_buf)"""
|
|
1394
|
+
return _medpython.IntVecIntMapAdaptor___setitem__(self, key, int_in_buf)
|
|
1395
|
+
|
|
1396
|
+
def keys(self):
|
|
1397
|
+
r"""keys(IntVecIntMapAdaptor self) -> IntVector"""
|
|
1398
|
+
return _medpython.IntVecIntMapAdaptor_keys(self)
|
|
1399
|
+
|
|
1400
|
+
# Register IntVecIntMapAdaptor in _medpython:
|
|
1401
|
+
_medpython.IntVecIntMapAdaptor_swigregister(IntVecIntMapAdaptor)
|
|
1402
|
+
|
|
1403
|
+
def logger_use_stdout():
|
|
1404
|
+
r"""logger_use_stdout()"""
|
|
1405
|
+
return _medpython.logger_use_stdout()
|
|
1406
|
+
class StringBtResultMap(object):
|
|
1407
|
+
r"""Proxy of C++ MPStringBtResultMap class."""
|
|
1408
|
+
|
|
1409
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1410
|
+
__repr__ = _swig_repr
|
|
1411
|
+
|
|
1412
|
+
def __init__(self):
|
|
1413
|
+
r"""__init__(StringBtResultMap self) -> StringBtResultMap"""
|
|
1414
|
+
_medpython.StringBtResultMap_swiginit(self, _medpython.new_StringBtResultMap())
|
|
1415
|
+
__swig_destroy__ = _medpython.delete_StringBtResultMap
|
|
1416
|
+
|
|
1417
|
+
def __len__(self):
|
|
1418
|
+
r"""__len__(StringBtResultMap self) -> int"""
|
|
1419
|
+
return _medpython.StringBtResultMap___len__(self)
|
|
1420
|
+
|
|
1421
|
+
def __getitem__(self, key):
|
|
1422
|
+
r"""__getitem__(StringBtResultMap self, std::string const & key) -> StringFloatMapAdaptor"""
|
|
1423
|
+
return _medpython.StringBtResultMap___getitem__(self, key)
|
|
1424
|
+
|
|
1425
|
+
def __setitem__(self, key, val):
|
|
1426
|
+
r"""__setitem__(StringBtResultMap self, std::string const & key, StringFloatMapAdaptor val)"""
|
|
1427
|
+
return _medpython.StringBtResultMap___setitem__(self, key, val)
|
|
1428
|
+
|
|
1429
|
+
def keys(self):
|
|
1430
|
+
r"""keys(StringBtResultMap self) -> StringVector"""
|
|
1431
|
+
return _medpython.StringBtResultMap_keys(self)
|
|
1432
|
+
|
|
1433
|
+
def to_file(self, file_path):
|
|
1434
|
+
r"""to_file(StringBtResultMap self, std::string const & file_path)"""
|
|
1435
|
+
return _medpython.StringBtResultMap_to_file(self, file_path)
|
|
1436
|
+
|
|
1437
|
+
# Register StringBtResultMap in _medpython:
|
|
1438
|
+
_medpython.StringBtResultMap_swigregister(StringBtResultMap)
|
|
1439
|
+
class Bootstrap(object):
|
|
1440
|
+
r"""Proxy of C++ MPBootstrap class."""
|
|
1441
|
+
|
|
1442
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1443
|
+
__repr__ = _swig_repr
|
|
1444
|
+
|
|
1445
|
+
def __init__(self):
|
|
1446
|
+
r"""__init__(Bootstrap self) -> Bootstrap"""
|
|
1447
|
+
_medpython.Bootstrap_swiginit(self, _medpython.new_Bootstrap())
|
|
1448
|
+
__swig_destroy__ = _medpython.delete_Bootstrap
|
|
1449
|
+
|
|
1450
|
+
def MEDPY_GET_sample_per_pid(self):
|
|
1451
|
+
r"""MEDPY_GET_sample_per_pid(Bootstrap self) -> int"""
|
|
1452
|
+
return _medpython.Bootstrap_MEDPY_GET_sample_per_pid(self)
|
|
1453
|
+
|
|
1454
|
+
def MEDPY_SET_sample_per_pid(self, _sample_per_pid):
|
|
1455
|
+
r"""MEDPY_SET_sample_per_pid(Bootstrap self, int _sample_per_pid)"""
|
|
1456
|
+
return _medpython.Bootstrap_MEDPY_SET_sample_per_pid(self, _sample_per_pid)
|
|
1457
|
+
|
|
1458
|
+
def MEDPY_GET_nbootstrap(self):
|
|
1459
|
+
r"""MEDPY_GET_nbootstrap(Bootstrap self) -> int"""
|
|
1460
|
+
return _medpython.Bootstrap_MEDPY_GET_nbootstrap(self)
|
|
1461
|
+
|
|
1462
|
+
def MEDPY_SET_nbootstrap(self, _nbootstrap):
|
|
1463
|
+
r"""MEDPY_SET_nbootstrap(Bootstrap self, int _nbootstrap)"""
|
|
1464
|
+
return _medpython.Bootstrap_MEDPY_SET_nbootstrap(self, _nbootstrap)
|
|
1465
|
+
|
|
1466
|
+
def MEDPY_GET_ROC_score_min_samples(self):
|
|
1467
|
+
r"""MEDPY_GET_ROC_score_min_samples(Bootstrap self) -> int"""
|
|
1468
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_score_min_samples(self)
|
|
1469
|
+
|
|
1470
|
+
def MEDPY_SET_ROC_score_min_samples(self, _ROC_score_min_samples):
|
|
1471
|
+
r"""MEDPY_SET_ROC_score_min_samples(Bootstrap self, int _ROC_score_min_samples)"""
|
|
1472
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_score_min_samples(self, _ROC_score_min_samples)
|
|
1473
|
+
|
|
1474
|
+
def MEDPY_GET_ROC_score_bins(self):
|
|
1475
|
+
r"""MEDPY_GET_ROC_score_bins(Bootstrap self) -> int"""
|
|
1476
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_score_bins(self)
|
|
1477
|
+
|
|
1478
|
+
def MEDPY_SET_ROC_score_bins(self, _ROC_score_bins):
|
|
1479
|
+
r"""MEDPY_SET_ROC_score_bins(Bootstrap self, int _ROC_score_bins)"""
|
|
1480
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_score_bins(self, _ROC_score_bins)
|
|
1481
|
+
|
|
1482
|
+
def MEDPY_GET_ROC_max_diff_working_point(self):
|
|
1483
|
+
r"""MEDPY_GET_ROC_max_diff_working_point(Bootstrap self) -> float"""
|
|
1484
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_max_diff_working_point(self)
|
|
1485
|
+
|
|
1486
|
+
def MEDPY_SET_ROC_max_diff_working_point(self, _ROC_max_diff_working_point):
|
|
1487
|
+
r"""MEDPY_SET_ROC_max_diff_working_point(Bootstrap self, float _ROC_max_diff_working_point)"""
|
|
1488
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_max_diff_working_point(self, _ROC_max_diff_working_point)
|
|
1489
|
+
|
|
1490
|
+
def MEDPY_GET_ROC_score_resolution(self):
|
|
1491
|
+
r"""MEDPY_GET_ROC_score_resolution(Bootstrap self) -> float"""
|
|
1492
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_score_resolution(self)
|
|
1493
|
+
|
|
1494
|
+
def MEDPY_SET_ROC_score_resolution(self, _ROC_score_resolutiont):
|
|
1495
|
+
r"""MEDPY_SET_ROC_score_resolution(Bootstrap self, float _ROC_score_resolutiont)"""
|
|
1496
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_score_resolution(self, _ROC_score_resolutiont)
|
|
1497
|
+
|
|
1498
|
+
def MEDPY_GET_ROC_use_score_working_points(self):
|
|
1499
|
+
r"""MEDPY_GET_ROC_use_score_working_points(Bootstrap self) -> bool"""
|
|
1500
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_use_score_working_points(self)
|
|
1501
|
+
|
|
1502
|
+
def MEDPY_SET_ROC_use_score_working_points(self, _ROC_use_score_working_points):
|
|
1503
|
+
r"""MEDPY_SET_ROC_use_score_working_points(Bootstrap self, bool _ROC_use_score_working_points)"""
|
|
1504
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_use_score_working_points(self, _ROC_use_score_working_points)
|
|
1505
|
+
|
|
1506
|
+
def MEDPY_GET_ROC_working_point_FPR(self):
|
|
1507
|
+
r"""MEDPY_GET_ROC_working_point_FPR(Bootstrap self) -> FloatVector"""
|
|
1508
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_working_point_FPR(self)
|
|
1509
|
+
|
|
1510
|
+
def MEDPY_SET_ROC_working_point_FPR(self, _ROC_working_point_FPR):
|
|
1511
|
+
r"""MEDPY_SET_ROC_working_point_FPR(Bootstrap self, FloatVector _ROC_working_point_FPR)"""
|
|
1512
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_working_point_FPR(self, _ROC_working_point_FPR)
|
|
1513
|
+
|
|
1514
|
+
def MEDPY_GET_ROC_working_point_PR(self):
|
|
1515
|
+
r"""MEDPY_GET_ROC_working_point_PR(Bootstrap self) -> FloatVector"""
|
|
1516
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_working_point_PR(self)
|
|
1517
|
+
|
|
1518
|
+
def MEDPY_SET_ROC_working_point_PR(self, _ROC_working_point_PR):
|
|
1519
|
+
r"""MEDPY_SET_ROC_working_point_PR(Bootstrap self, FloatVector _ROC_working_point_PR)"""
|
|
1520
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_working_point_PR(self, _ROC_working_point_PR)
|
|
1521
|
+
|
|
1522
|
+
def MEDPY_GET_ROC_working_point_SENS(self):
|
|
1523
|
+
r"""MEDPY_GET_ROC_working_point_SENS(Bootstrap self) -> FloatVector"""
|
|
1524
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_working_point_SENS(self)
|
|
1525
|
+
|
|
1526
|
+
def MEDPY_SET_ROC_working_point_SENS(self, _ROC_working_point_SENS):
|
|
1527
|
+
r"""MEDPY_SET_ROC_working_point_SENS(Bootstrap self, FloatVector _ROC_working_point_SENS)"""
|
|
1528
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_working_point_SENS(self, _ROC_working_point_SENS)
|
|
1529
|
+
|
|
1530
|
+
def MEDPY_GET_ROC_working_point_Score(self):
|
|
1531
|
+
r"""MEDPY_GET_ROC_working_point_Score(Bootstrap self) -> FloatVector"""
|
|
1532
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_working_point_Score(self)
|
|
1533
|
+
|
|
1534
|
+
def MEDPY_SET_ROC_working_point_Score(self, _ROC_working_point_Score):
|
|
1535
|
+
r"""MEDPY_SET_ROC_working_point_Score(Bootstrap self, FloatVector _ROC_working_point_Score)"""
|
|
1536
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_working_point_Score(self, _ROC_working_point_Score)
|
|
1537
|
+
|
|
1538
|
+
def MEDPY_GET_ROC_working_point_TOPN(self):
|
|
1539
|
+
r"""MEDPY_GET_ROC_working_point_TOPN(Bootstrap self) -> IntVector"""
|
|
1540
|
+
return _medpython.Bootstrap_MEDPY_GET_ROC_working_point_TOPN(self)
|
|
1541
|
+
|
|
1542
|
+
def MEDPY_SET_ROC_working_point_TOPN(self, MEDPY_GET_ROC_working_point_TOPN):
|
|
1543
|
+
r"""MEDPY_SET_ROC_working_point_TOPN(Bootstrap self, IntVector MEDPY_GET_ROC_working_point_TOPN)"""
|
|
1544
|
+
return _medpython.Bootstrap_MEDPY_SET_ROC_working_point_TOPN(self, MEDPY_GET_ROC_working_point_TOPN)
|
|
1545
|
+
|
|
1546
|
+
def parse_cohort_line(self, line):
|
|
1547
|
+
r"""parse_cohort_line(Bootstrap self, string const & line)"""
|
|
1548
|
+
return _medpython.Bootstrap_parse_cohort_line(self, line)
|
|
1549
|
+
|
|
1550
|
+
def get_cohort_from_arg(self, single_cohort):
|
|
1551
|
+
r"""get_cohort_from_arg(Bootstrap self, string const & single_cohort)"""
|
|
1552
|
+
return _medpython.Bootstrap_get_cohort_from_arg(self, single_cohort)
|
|
1553
|
+
|
|
1554
|
+
def parse_cohort_file(self, cohorts_path):
|
|
1555
|
+
r"""parse_cohort_file(Bootstrap self, string const & cohorts_path)"""
|
|
1556
|
+
return _medpython.Bootstrap_parse_cohort_file(self, cohorts_path)
|
|
1557
|
+
|
|
1558
|
+
def init_from_str(self, str):
|
|
1559
|
+
r"""init_from_str(Bootstrap self, string const & str)"""
|
|
1560
|
+
return _medpython.Bootstrap_init_from_str(self, str)
|
|
1561
|
+
|
|
1562
|
+
def bootstrap_cohort(self, samples, rep_path, json_model, cohorts_path):
|
|
1563
|
+
r"""bootstrap_cohort(Bootstrap self, Samples samples, string const & rep_path, string const & json_model, string const & cohorts_path) -> StringBtResultMap"""
|
|
1564
|
+
return _medpython.Bootstrap_bootstrap_cohort(self, samples, rep_path, json_model, cohorts_path)
|
|
1565
|
+
|
|
1566
|
+
def _bootstrap(self, preds, labels):
|
|
1567
|
+
r"""_bootstrap(Bootstrap self, FloatVector preds, FloatVector labels) -> StringFloatMapAdaptor"""
|
|
1568
|
+
return _medpython.Bootstrap__bootstrap(self, preds, labels)
|
|
1569
|
+
|
|
1570
|
+
def _bootstrap_pid(self, pids, preds, labels):
|
|
1571
|
+
r"""_bootstrap_pid(Bootstrap self, FloatVector pids, FloatVector preds, FloatVector labels) -> StringFloatMapAdaptor"""
|
|
1572
|
+
return _medpython.Bootstrap__bootstrap_pid(self, pids, preds, labels)
|
|
1573
|
+
|
|
1574
|
+
sample_per_pid = property(MEDPY_GET_sample_per_pid,MEDPY_SET_sample_per_pid)
|
|
1575
|
+
nbootstrap = property(MEDPY_GET_nbootstrap,MEDPY_SET_nbootstrap)
|
|
1576
|
+
ROC_score_min_samples = property(MEDPY_GET_ROC_score_min_samples,MEDPY_SET_ROC_score_min_samples)
|
|
1577
|
+
ROC_score_bins = property(MEDPY_GET_ROC_score_bins,MEDPY_SET_ROC_score_bins)
|
|
1578
|
+
ROC_max_diff_working_point = property(MEDPY_GET_ROC_max_diff_working_point,MEDPY_SET_ROC_max_diff_working_point)
|
|
1579
|
+
ROC_score_resolution = property(MEDPY_GET_ROC_score_resolution,MEDPY_SET_ROC_score_resolution)
|
|
1580
|
+
ROC_use_score_working_points = property(MEDPY_GET_ROC_use_score_working_points,MEDPY_SET_ROC_use_score_working_points)
|
|
1581
|
+
ROC_working_point_FPR = property(MEDPY_GET_ROC_working_point_FPR,MEDPY_SET_ROC_working_point_FPR)
|
|
1582
|
+
ROC_working_point_PR = property(MEDPY_GET_ROC_working_point_PR,MEDPY_SET_ROC_working_point_PR)
|
|
1583
|
+
ROC_working_point_SENS = property(MEDPY_GET_ROC_working_point_SENS,MEDPY_SET_ROC_working_point_SENS)
|
|
1584
|
+
ROC_working_point_Score = property(MEDPY_GET_ROC_working_point_Score,MEDPY_SET_ROC_working_point_Score)
|
|
1585
|
+
ROC_working_point_TOPN = property(MEDPY_GET_ROC_working_point_TOPN,MEDPY_SET_ROC_working_point_TOPN)
|
|
1586
|
+
|
|
1587
|
+
|
|
1588
|
+
# Register Bootstrap in _medpython:
|
|
1589
|
+
_medpython.Bootstrap_swigregister(Bootstrap)
|
|
1590
|
+
class Dictionary(object):
|
|
1591
|
+
r"""Proxy of C++ MPDictionary class."""
|
|
1592
|
+
|
|
1593
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1594
|
+
__repr__ = _swig_repr
|
|
1595
|
+
|
|
1596
|
+
def __init__(self, rep):
|
|
1597
|
+
r"""__init__(Dictionary self, PidRepository rep) -> Dictionary"""
|
|
1598
|
+
_medpython.Dictionary_swiginit(self, _medpython.new_Dictionary(rep))
|
|
1599
|
+
|
|
1600
|
+
def section_id(self, name):
|
|
1601
|
+
r"""section_id(Dictionary self, string name) -> int"""
|
|
1602
|
+
return _medpython.Dictionary_section_id(self, name)
|
|
1603
|
+
|
|
1604
|
+
def id(self, section_id, signame):
|
|
1605
|
+
r"""id(Dictionary self, int section_id, string & signame) -> int"""
|
|
1606
|
+
return _medpython.Dictionary_id(self, section_id, signame)
|
|
1607
|
+
|
|
1608
|
+
def name(self, section_id, id):
|
|
1609
|
+
r"""name(Dictionary self, int section_id, int id) -> string"""
|
|
1610
|
+
return _medpython.Dictionary_name(self, section_id, id)
|
|
1611
|
+
|
|
1612
|
+
def prep_sets_lookup_table(self, section_id, set_names):
|
|
1613
|
+
r"""prep_sets_lookup_table(Dictionary self, int section_id, StringVector set_names)"""
|
|
1614
|
+
return _medpython.Dictionary_prep_sets_lookup_table(self, section_id, set_names)
|
|
1615
|
+
|
|
1616
|
+
def get_members_to_all_sets(self, section_id, members_array):
|
|
1617
|
+
r"""get_members_to_all_sets(Dictionary self, int section_id, int * members_array) -> IntVecIntMapAdaptor"""
|
|
1618
|
+
return _medpython.Dictionary_get_members_to_all_sets(self, section_id, members_array)
|
|
1619
|
+
__swig_destroy__ = _medpython.delete_Dictionary
|
|
1620
|
+
|
|
1621
|
+
# Register Dictionary in _medpython:
|
|
1622
|
+
_medpython.Dictionary_swigregister(Dictionary)
|
|
1623
|
+
class FeatureAttr(object):
|
|
1624
|
+
r"""Proxy of C++ MPFeatureAttr class."""
|
|
1625
|
+
|
|
1626
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1627
|
+
__repr__ = _swig_repr
|
|
1628
|
+
|
|
1629
|
+
def __init__(self):
|
|
1630
|
+
r"""__init__(FeatureAttr self) -> FeatureAttr"""
|
|
1631
|
+
_medpython.FeatureAttr_swiginit(self, _medpython.new_FeatureAttr())
|
|
1632
|
+
__swig_destroy__ = _medpython.delete_FeatureAttr
|
|
1633
|
+
|
|
1634
|
+
def MEDPY_SET_normalized(self, _normalized):
|
|
1635
|
+
r"""MEDPY_SET_normalized(FeatureAttr self, bool _normalized)"""
|
|
1636
|
+
return _medpython.FeatureAttr_MEDPY_SET_normalized(self, _normalized)
|
|
1637
|
+
|
|
1638
|
+
def MEDPY_GET_normalized(self):
|
|
1639
|
+
r"""MEDPY_GET_normalized(FeatureAttr self) -> bool"""
|
|
1640
|
+
return _medpython.FeatureAttr_MEDPY_GET_normalized(self)
|
|
1641
|
+
|
|
1642
|
+
def MEDPY_SET_imputed(self, _imputed):
|
|
1643
|
+
r"""MEDPY_SET_imputed(FeatureAttr self, bool _imputed)"""
|
|
1644
|
+
return _medpython.FeatureAttr_MEDPY_SET_imputed(self, _imputed)
|
|
1645
|
+
|
|
1646
|
+
def MEDPY_GET_imputed(self):
|
|
1647
|
+
r"""MEDPY_GET_imputed(FeatureAttr self) -> bool"""
|
|
1648
|
+
return _medpython.FeatureAttr_MEDPY_GET_imputed(self)
|
|
1649
|
+
|
|
1650
|
+
def MEDPY_SET_denorm_mean(self, _denorm_mean):
|
|
1651
|
+
r"""MEDPY_SET_denorm_mean(FeatureAttr self, float _denorm_mean)"""
|
|
1652
|
+
return _medpython.FeatureAttr_MEDPY_SET_denorm_mean(self, _denorm_mean)
|
|
1653
|
+
|
|
1654
|
+
def MEDPY_GET_denorm_mean(self):
|
|
1655
|
+
r"""MEDPY_GET_denorm_mean(FeatureAttr self) -> float"""
|
|
1656
|
+
return _medpython.FeatureAttr_MEDPY_GET_denorm_mean(self)
|
|
1657
|
+
|
|
1658
|
+
def MEDPY_SET_denorm_sdv(self, _denorm_sdv):
|
|
1659
|
+
r"""MEDPY_SET_denorm_sdv(FeatureAttr self, float _denorm_sdv)"""
|
|
1660
|
+
return _medpython.FeatureAttr_MEDPY_SET_denorm_sdv(self, _denorm_sdv)
|
|
1661
|
+
|
|
1662
|
+
def MEDPY_GET_denorm_sdv(self):
|
|
1663
|
+
r"""MEDPY_GET_denorm_sdv(FeatureAttr self) -> float"""
|
|
1664
|
+
return _medpython.FeatureAttr_MEDPY_GET_denorm_sdv(self)
|
|
1665
|
+
|
|
1666
|
+
def asSerializable(self):
|
|
1667
|
+
r"""asSerializable(FeatureAttr self) -> SerializableObject"""
|
|
1668
|
+
return _medpython.FeatureAttr_asSerializable(self)
|
|
1669
|
+
|
|
1670
|
+
normalized = property(MEDPY_GET_normalized,MEDPY_SET_normalized)
|
|
1671
|
+
imputed = property(MEDPY_GET_imputed,MEDPY_SET_imputed)
|
|
1672
|
+
denorm_mean = property(MEDPY_GET_denorm_mean,MEDPY_SET_denorm_mean)
|
|
1673
|
+
denorm_sdv = property(MEDPY_GET_denorm_sdv,MEDPY_SET_denorm_sdv)
|
|
1674
|
+
|
|
1675
|
+
|
|
1676
|
+
# Register FeatureAttr in _medpython:
|
|
1677
|
+
_medpython.FeatureAttr_swigregister(FeatureAttr)
|
|
1678
|
+
class StringFeatureAttrMapAdaptor(object):
|
|
1679
|
+
r"""Proxy of C++ MPStringFeatureAttrMapAdaptor class."""
|
|
1680
|
+
|
|
1681
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1682
|
+
__repr__ = _swig_repr
|
|
1683
|
+
|
|
1684
|
+
def __init__(self):
|
|
1685
|
+
r"""__init__(StringFeatureAttrMapAdaptor self) -> StringFeatureAttrMapAdaptor"""
|
|
1686
|
+
_medpython.StringFeatureAttrMapAdaptor_swiginit(self, _medpython.new_StringFeatureAttrMapAdaptor())
|
|
1687
|
+
__swig_destroy__ = _medpython.delete_StringFeatureAttrMapAdaptor
|
|
1688
|
+
|
|
1689
|
+
def __len__(self):
|
|
1690
|
+
r"""__len__(StringFeatureAttrMapAdaptor self) -> int"""
|
|
1691
|
+
return _medpython.StringFeatureAttrMapAdaptor___len__(self)
|
|
1692
|
+
|
|
1693
|
+
def __getitem__(self, key):
|
|
1694
|
+
r"""__getitem__(StringFeatureAttrMapAdaptor self, std::string key) -> FeatureAttr"""
|
|
1695
|
+
return _medpython.StringFeatureAttrMapAdaptor___getitem__(self, key)
|
|
1696
|
+
|
|
1697
|
+
def __setitem__(self, key, val):
|
|
1698
|
+
r"""__setitem__(StringFeatureAttrMapAdaptor self, std::string key, FeatureAttr val)"""
|
|
1699
|
+
return _medpython.StringFeatureAttrMapAdaptor___setitem__(self, key, val)
|
|
1700
|
+
|
|
1701
|
+
def keys(self):
|
|
1702
|
+
r"""keys(StringFeatureAttrMapAdaptor self) -> StringVector"""
|
|
1703
|
+
return _medpython.StringFeatureAttrMapAdaptor_keys(self)
|
|
1704
|
+
|
|
1705
|
+
# Register StringFeatureAttrMapAdaptor in _medpython:
|
|
1706
|
+
_medpython.StringFeatureAttrMapAdaptor_swigregister(StringFeatureAttrMapAdaptor)
|
|
1707
|
+
class Features(object):
|
|
1708
|
+
r"""Proxy of C++ MPFeatures class."""
|
|
1709
|
+
|
|
1710
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1711
|
+
__repr__ = _swig_repr
|
|
1712
|
+
__swig_destroy__ = _medpython.delete_Features
|
|
1713
|
+
|
|
1714
|
+
def __init__(self, *args):
|
|
1715
|
+
r"""
|
|
1716
|
+
__init__(Features self) -> Features
|
|
1717
|
+
__init__(Features self, int _time_unit) -> Features
|
|
1718
|
+
__init__(Features self, Features other) -> Features
|
|
1719
|
+
"""
|
|
1720
|
+
_medpython.Features_swiginit(self, _medpython.new_Features(*args))
|
|
1721
|
+
|
|
1722
|
+
def MEDPY_GET_data(self):
|
|
1723
|
+
r"""MEDPY_GET_data(Features self) -> StringVecFloatMapAdaptor"""
|
|
1724
|
+
return _medpython.Features_MEDPY_GET_data(self)
|
|
1725
|
+
|
|
1726
|
+
def MEDPY_GET_weights(self):
|
|
1727
|
+
r"""MEDPY_GET_weights(Features self)"""
|
|
1728
|
+
return _medpython.Features_MEDPY_GET_weights(self)
|
|
1729
|
+
|
|
1730
|
+
def MEDPY_GET_samples(self):
|
|
1731
|
+
r"""MEDPY_GET_samples(Features self) -> SampleVectorAdaptor"""
|
|
1732
|
+
return _medpython.Features_MEDPY_GET_samples(self)
|
|
1733
|
+
|
|
1734
|
+
def MEDPY_GET_pid_pos_len(self):
|
|
1735
|
+
r"""MEDPY_GET_pid_pos_len(Features self) -> IntPairIntIntMapAdaptor"""
|
|
1736
|
+
return _medpython.Features_MEDPY_GET_pid_pos_len(self)
|
|
1737
|
+
|
|
1738
|
+
def MEDPY_GET_attributes(self):
|
|
1739
|
+
r"""MEDPY_GET_attributes(Features self) -> StringFeatureAttrMapAdaptor"""
|
|
1740
|
+
return _medpython.Features_MEDPY_GET_attributes(self)
|
|
1741
|
+
|
|
1742
|
+
def MEDPY_GET_tags(self):
|
|
1743
|
+
r"""MEDPY_GET_tags(Features self) -> StringUOSetStringMapAdaptor"""
|
|
1744
|
+
return _medpython.Features_MEDPY_GET_tags(self)
|
|
1745
|
+
|
|
1746
|
+
def MEDPY_GET_time_unit(self):
|
|
1747
|
+
r"""MEDPY_GET_time_unit(Features self) -> int"""
|
|
1748
|
+
return _medpython.Features_MEDPY_GET_time_unit(self)
|
|
1749
|
+
|
|
1750
|
+
def MEDPY_SET_time_unit(self, new_time_unit):
|
|
1751
|
+
r"""MEDPY_SET_time_unit(Features self, int new_time_unit)"""
|
|
1752
|
+
return _medpython.Features_MEDPY_SET_time_unit(self, new_time_unit)
|
|
1753
|
+
|
|
1754
|
+
@staticmethod
|
|
1755
|
+
def MEDPY_GET_global_serial_id_cnt():
|
|
1756
|
+
r"""MEDPY_GET_global_serial_id_cnt() -> int"""
|
|
1757
|
+
return _medpython.Features_MEDPY_GET_global_serial_id_cnt()
|
|
1758
|
+
|
|
1759
|
+
@staticmethod
|
|
1760
|
+
def MEDPY_SET_global_serial_id_cnt(newval):
|
|
1761
|
+
r"""MEDPY_SET_global_serial_id_cnt(int newval)"""
|
|
1762
|
+
return _medpython.Features_MEDPY_SET_global_serial_id_cnt(newval)
|
|
1763
|
+
|
|
1764
|
+
def clear(self):
|
|
1765
|
+
r"""clear(Features self)"""
|
|
1766
|
+
return _medpython.Features_clear(self)
|
|
1767
|
+
|
|
1768
|
+
def set_time_unit(self, _time_unit):
|
|
1769
|
+
r"""set_time_unit(Features self, int _time_unit)"""
|
|
1770
|
+
return _medpython.Features_set_time_unit(self, _time_unit)
|
|
1771
|
+
|
|
1772
|
+
def get_feature_names(self):
|
|
1773
|
+
r"""get_feature_names(Features self) -> StringVector"""
|
|
1774
|
+
return _medpython.Features_get_feature_names(self)
|
|
1775
|
+
|
|
1776
|
+
def get_as_matrix(self, *args):
|
|
1777
|
+
r"""
|
|
1778
|
+
get_as_matrix(Features self, Mat mat)
|
|
1779
|
+
get_as_matrix(Features self, Mat mat, StringVector names)
|
|
1780
|
+
get_as_matrix(Features self, Mat mat, StringVector names, int * int_in_buf)
|
|
1781
|
+
"""
|
|
1782
|
+
return _medpython.Features_get_as_matrix(self, *args)
|
|
1783
|
+
|
|
1784
|
+
def set_as_matrix(self, mat):
|
|
1785
|
+
r"""set_as_matrix(Features self, Mat mat)"""
|
|
1786
|
+
return _medpython.Features_set_as_matrix(self, mat)
|
|
1787
|
+
|
|
1788
|
+
def append_samples(self, *args):
|
|
1789
|
+
r"""
|
|
1790
|
+
append_samples(Features self, IdSamples in_samples)
|
|
1791
|
+
append_samples(Features self, Samples in_samples)
|
|
1792
|
+
"""
|
|
1793
|
+
return _medpython.Features_append_samples(self, *args)
|
|
1794
|
+
|
|
1795
|
+
def insert_samples(self, in_samples, index):
|
|
1796
|
+
r"""insert_samples(Features self, IdSamples in_samples, int index)"""
|
|
1797
|
+
return _medpython.Features_insert_samples(self, in_samples, index)
|
|
1798
|
+
|
|
1799
|
+
def init_all_samples(self, in_samples):
|
|
1800
|
+
r"""init_all_samples(Features self, IdSamplesVectorAdaptor in_samples)"""
|
|
1801
|
+
return _medpython.Features_init_all_samples(self, in_samples)
|
|
1802
|
+
|
|
1803
|
+
def init_pid_pos_len(self):
|
|
1804
|
+
r"""init_pid_pos_len(Features self)"""
|
|
1805
|
+
return _medpython.Features_init_pid_pos_len(self)
|
|
1806
|
+
|
|
1807
|
+
def get_pid_pos(self, pid):
|
|
1808
|
+
r"""get_pid_pos(Features self, int pid) -> int"""
|
|
1809
|
+
return _medpython.Features_get_pid_pos(self, pid)
|
|
1810
|
+
|
|
1811
|
+
def get_pid_len(self, pid):
|
|
1812
|
+
r"""get_pid_len(Features self, int pid) -> int"""
|
|
1813
|
+
return _medpython.Features_get_pid_len(self, pid)
|
|
1814
|
+
|
|
1815
|
+
def get_crc(self):
|
|
1816
|
+
r"""get_crc(Features self) -> unsigned int"""
|
|
1817
|
+
return _medpython.Features_get_crc(self)
|
|
1818
|
+
|
|
1819
|
+
def print_csv(self):
|
|
1820
|
+
r"""print_csv(Features self)"""
|
|
1821
|
+
return _medpython.Features_print_csv(self)
|
|
1822
|
+
|
|
1823
|
+
def get_samples(self, outSamples):
|
|
1824
|
+
r"""get_samples(Features self, Samples outSamples)"""
|
|
1825
|
+
return _medpython.Features_get_samples(self, outSamples)
|
|
1826
|
+
|
|
1827
|
+
def get_max_serial_id_cnt(self):
|
|
1828
|
+
r"""get_max_serial_id_cnt(Features self) -> int"""
|
|
1829
|
+
return _medpython.Features_get_max_serial_id_cnt(self)
|
|
1830
|
+
|
|
1831
|
+
def write_as_csv_mat(self, csv_fname):
|
|
1832
|
+
r"""write_as_csv_mat(Features self, string const & csv_fname) -> int"""
|
|
1833
|
+
return _medpython.Features_write_as_csv_mat(self, csv_fname)
|
|
1834
|
+
|
|
1835
|
+
def read_from_csv_mat(self, csv_fname):
|
|
1836
|
+
r"""read_from_csv_mat(Features self, string const & csv_fname) -> int"""
|
|
1837
|
+
return _medpython.Features_read_from_csv_mat(self, csv_fname)
|
|
1838
|
+
|
|
1839
|
+
def filter(self, selectedFeatures):
|
|
1840
|
+
r"""filter(Features self, StringVector selectedFeatures) -> int"""
|
|
1841
|
+
return _medpython.Features_filter(self, selectedFeatures)
|
|
1842
|
+
|
|
1843
|
+
def version(self):
|
|
1844
|
+
r"""version(Features self) -> int"""
|
|
1845
|
+
return _medpython.Features_version(self)
|
|
1846
|
+
|
|
1847
|
+
def asSerializable(self):
|
|
1848
|
+
r"""asSerializable(Features self) -> SerializableObject"""
|
|
1849
|
+
return _medpython.Features_asSerializable(self)
|
|
1850
|
+
|
|
1851
|
+
def split_by_fold(self, outMatrix, iFold, isLearning):
|
|
1852
|
+
r"""split_by_fold(Features self, Features outMatrix, int iFold, bool isLearning)"""
|
|
1853
|
+
return _medpython.Features_split_by_fold(self, outMatrix, iFold, isLearning)
|
|
1854
|
+
|
|
1855
|
+
data = property(MEDPY_GET_data,None)
|
|
1856
|
+
weights = property(MEDPY_GET_weights,None)
|
|
1857
|
+
samples = property(MEDPY_GET_samples,None)
|
|
1858
|
+
pid_pos_len = property(MEDPY_GET_pid_pos_len,None)
|
|
1859
|
+
attributes = property(MEDPY_GET_attributes,None)
|
|
1860
|
+
tags = property(MEDPY_GET_tags,None)
|
|
1861
|
+
time_unit = property(MEDPY_GET_time_unit,MEDPY_SET_time_unit)
|
|
1862
|
+
global_serial_id_cnt = property(MEDPY_GET_global_serial_id_cnt,MEDPY_SET_global_serial_id_cnt)
|
|
1863
|
+
|
|
1864
|
+
|
|
1865
|
+
# Register Features in _medpython:
|
|
1866
|
+
_medpython.Features_swigregister(Features)
|
|
1867
|
+
class RNG(object):
|
|
1868
|
+
r"""Proxy of C++ MPRNG class."""
|
|
1869
|
+
|
|
1870
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1871
|
+
__repr__ = _swig_repr
|
|
1872
|
+
|
|
1873
|
+
def rand(self):
|
|
1874
|
+
r"""rand(RNG self) -> int"""
|
|
1875
|
+
return _medpython.RNG_rand(self)
|
|
1876
|
+
|
|
1877
|
+
def rand30(self):
|
|
1878
|
+
r"""rand30(RNG self) -> int"""
|
|
1879
|
+
return _medpython.RNG_rand30(self)
|
|
1880
|
+
|
|
1881
|
+
def srand(self, val):
|
|
1882
|
+
r"""srand(RNG self, int val)"""
|
|
1883
|
+
return _medpython.RNG_srand(self, val)
|
|
1884
|
+
|
|
1885
|
+
def max(self):
|
|
1886
|
+
r"""max(RNG self) -> int"""
|
|
1887
|
+
return _medpython.RNG_max(self)
|
|
1888
|
+
|
|
1889
|
+
def __init__(self):
|
|
1890
|
+
r"""__init__(RNG self) -> RNG"""
|
|
1891
|
+
_medpython.RNG_swiginit(self, _medpython.new_RNG())
|
|
1892
|
+
__swig_destroy__ = _medpython.delete_RNG
|
|
1893
|
+
|
|
1894
|
+
# Register RNG in _medpython:
|
|
1895
|
+
_medpython.RNG_swigregister(RNG)
|
|
1896
|
+
class GlobalClass(object):
|
|
1897
|
+
r"""Proxy of C++ MPGlobalClass class."""
|
|
1898
|
+
|
|
1899
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1900
|
+
__repr__ = _swig_repr
|
|
1901
|
+
|
|
1902
|
+
def MEDPY_GET_default_time_unit(self):
|
|
1903
|
+
r"""MEDPY_GET_default_time_unit(GlobalClass self) -> int"""
|
|
1904
|
+
return _medpython.GlobalClass_MEDPY_GET_default_time_unit(self)
|
|
1905
|
+
|
|
1906
|
+
def MEDPY_SET_default_time_unit(self, new_val):
|
|
1907
|
+
r"""MEDPY_SET_default_time_unit(GlobalClass self, int new_val)"""
|
|
1908
|
+
return _medpython.GlobalClass_MEDPY_SET_default_time_unit(self, new_val)
|
|
1909
|
+
|
|
1910
|
+
def MEDPY_GET_default_windows_time_unit(self):
|
|
1911
|
+
r"""MEDPY_GET_default_windows_time_unit(GlobalClass self) -> int"""
|
|
1912
|
+
return _medpython.GlobalClass_MEDPY_GET_default_windows_time_unit(self)
|
|
1913
|
+
|
|
1914
|
+
def MEDPY_SET_default_windows_time_unit(self, new_val):
|
|
1915
|
+
r"""MEDPY_SET_default_windows_time_unit(GlobalClass self, int new_val)"""
|
|
1916
|
+
return _medpython.GlobalClass_MEDPY_SET_default_windows_time_unit(self, new_val)
|
|
1917
|
+
RNG = property(_medpython.GlobalClass_RNG_get, _medpython.GlobalClass_RNG_set, doc=r"""RNG : MPRNG""")
|
|
1918
|
+
logger = property(_medpython.GlobalClass_logger_get, _medpython.GlobalClass_logger_set, doc=r"""logger : MPLogger""")
|
|
1919
|
+
version_info = property(_medpython.GlobalClass_version_info_get, _medpython.GlobalClass_version_info_set, doc=r"""version_info : string""")
|
|
1920
|
+
|
|
1921
|
+
def __init__(self):
|
|
1922
|
+
r"""__init__(GlobalClass self) -> GlobalClass"""
|
|
1923
|
+
_medpython.GlobalClass_swiginit(self, _medpython.new_GlobalClass())
|
|
1924
|
+
|
|
1925
|
+
default_time_unit = property(MEDPY_GET_default_time_unit,MEDPY_SET_default_time_unit)
|
|
1926
|
+
default_windows_time_unit = property(MEDPY_GET_default_windows_time_unit,MEDPY_SET_default_windows_time_unit)
|
|
1927
|
+
|
|
1928
|
+
__swig_destroy__ = _medpython.delete_GlobalClass
|
|
1929
|
+
|
|
1930
|
+
# Register GlobalClass in _medpython:
|
|
1931
|
+
_medpython.GlobalClass_swigregister(GlobalClass)
|
|
1932
|
+
class CommonLib(object):
|
|
1933
|
+
r"""Proxy of C++ MPCommonLib class."""
|
|
1934
|
+
|
|
1935
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1936
|
+
__repr__ = _swig_repr
|
|
1937
|
+
|
|
1938
|
+
@staticmethod
|
|
1939
|
+
def print_auc_performance(samples, folds, outFile):
|
|
1940
|
+
r"""print_auc_performance(Samples samples, int * folds, string outFile)"""
|
|
1941
|
+
return _medpython.CommonLib_print_auc_performance(samples, folds, outFile)
|
|
1942
|
+
|
|
1943
|
+
@staticmethod
|
|
1944
|
+
def shuffleMatrix(matrix):
|
|
1945
|
+
r"""shuffleMatrix(Features matrix)"""
|
|
1946
|
+
return _medpython.CommonLib_shuffleMatrix(matrix)
|
|
1947
|
+
|
|
1948
|
+
@staticmethod
|
|
1949
|
+
def read_predictor_from_file(pred, predictorFile):
|
|
1950
|
+
r"""read_predictor_from_file(Predictor pred, string predictorFile)"""
|
|
1951
|
+
return _medpython.CommonLib_read_predictor_from_file(pred, predictorFile)
|
|
1952
|
+
|
|
1953
|
+
def __init__(self):
|
|
1954
|
+
r"""__init__(CommonLib self) -> CommonLib"""
|
|
1955
|
+
_medpython.CommonLib_swiginit(self, _medpython.new_CommonLib())
|
|
1956
|
+
__swig_destroy__ = _medpython.delete_CommonLib
|
|
1957
|
+
|
|
1958
|
+
# Register CommonLib in _medpython:
|
|
1959
|
+
_medpython.CommonLib_swigregister(CommonLib)
|
|
1960
|
+
class Logger(object):
|
|
1961
|
+
r"""Proxy of C++ MPLogger class."""
|
|
1962
|
+
|
|
1963
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
1964
|
+
__repr__ = _swig_repr
|
|
1965
|
+
|
|
1966
|
+
def init_all_levels(self, level):
|
|
1967
|
+
r"""init_all_levels(Logger self, int level)"""
|
|
1968
|
+
return _medpython.Logger_init_all_levels(self, level)
|
|
1969
|
+
|
|
1970
|
+
def init_all_files(self, fname):
|
|
1971
|
+
r"""init_all_files(Logger self, string const & fname) -> int"""
|
|
1972
|
+
return _medpython.Logger_init_all_files(self, fname)
|
|
1973
|
+
|
|
1974
|
+
def init_level(self, section, level):
|
|
1975
|
+
r"""init_level(Logger self, int section, int level)"""
|
|
1976
|
+
return _medpython.Logger_init_level(self, section, level)
|
|
1977
|
+
|
|
1978
|
+
def init_file(self, section, fname):
|
|
1979
|
+
r"""init_file(Logger self, int section, string const & fname) -> int"""
|
|
1980
|
+
return _medpython.Logger_init_file(self, section, fname)
|
|
1981
|
+
|
|
1982
|
+
def add_file(self, section, fname):
|
|
1983
|
+
r"""add_file(Logger self, int section, string const & fname) -> int"""
|
|
1984
|
+
return _medpython.Logger_add_file(self, section, fname)
|
|
1985
|
+
|
|
1986
|
+
def init_out(self, *args):
|
|
1987
|
+
r"""init_out(Logger self, string const & fname="")"""
|
|
1988
|
+
return _medpython.Logger_init_out(self, *args)
|
|
1989
|
+
|
|
1990
|
+
def __init__(self):
|
|
1991
|
+
r"""__init__(Logger self) -> Logger"""
|
|
1992
|
+
_medpython.Logger_swiginit(self, _medpython.new_Logger())
|
|
1993
|
+
__swig_destroy__ = _medpython.delete_Logger
|
|
1994
|
+
|
|
1995
|
+
# Register Logger in _medpython:
|
|
1996
|
+
_medpython.Logger_swigregister(Logger)
|
|
1997
|
+
cvar = _medpython.cvar
|
|
1998
|
+
Logger.LOG_APP_ = _medpython.cvar.Logger_LOG_APP_
|
|
1999
|
+
Logger.LOG_DEF_ = _medpython.cvar.Logger_LOG_DEF_
|
|
2000
|
+
Logger.LOG_INFRA_ = _medpython.cvar.Logger_LOG_INFRA_
|
|
2001
|
+
Logger.LOG_REP_ = _medpython.cvar.Logger_LOG_REP_
|
|
2002
|
+
Logger.LOG_INDEX_ = _medpython.cvar.Logger_LOG_INDEX_
|
|
2003
|
+
Logger.LOG_DICT_ = _medpython.cvar.Logger_LOG_DICT_
|
|
2004
|
+
Logger.LOG_SIG_ = _medpython.cvar.Logger_LOG_SIG_
|
|
2005
|
+
Logger.LOG_CONVERT_ = _medpython.cvar.Logger_LOG_CONVERT_
|
|
2006
|
+
Logger.LOG_MED_UTILS_ = _medpython.cvar.Logger_LOG_MED_UTILS_
|
|
2007
|
+
Logger.LOG_MEDMAT_ = _medpython.cvar.Logger_LOG_MEDMAT_
|
|
2008
|
+
Logger.LOG_MEDIO_ = _medpython.cvar.Logger_LOG_MEDIO_
|
|
2009
|
+
Logger.LOG_DATA_STRUCTURES_ = _medpython.cvar.Logger_LOG_DATA_STRUCTURES_
|
|
2010
|
+
Logger.LOG_MEDALGO_ = _medpython.cvar.Logger_LOG_MEDALGO_
|
|
2011
|
+
Logger.LOG_MEDFEAT_ = _medpython.cvar.Logger_LOG_MEDFEAT_
|
|
2012
|
+
Logger.LOG_MEDSTAT_ = _medpython.cvar.Logger_LOG_MEDSTAT_
|
|
2013
|
+
Logger.LOG_REPCLEANER_ = _medpython.cvar.Logger_LOG_REPCLEANER_
|
|
2014
|
+
Logger.LOG_FTRGNRTR_ = _medpython.cvar.Logger_LOG_FTRGNRTR_
|
|
2015
|
+
Logger.LOG_CV_ = _medpython.cvar.Logger_LOG_CV_
|
|
2016
|
+
Logger.LOG_FEATCLEANER_ = _medpython.cvar.Logger_LOG_FEATCLEANER_
|
|
2017
|
+
Logger.LOG_VALCLNR_ = _medpython.cvar.Logger_LOG_VALCLNR_
|
|
2018
|
+
Logger.MED_SAMPLES_CV_ = _medpython.cvar.Logger_MED_SAMPLES_CV_
|
|
2019
|
+
Logger.LOG_FEAT_SELECTOR_ = _medpython.cvar.Logger_LOG_FEAT_SELECTOR_
|
|
2020
|
+
Logger.LOG_SMPL_FILTER_ = _medpython.cvar.Logger_LOG_SMPL_FILTER_
|
|
2021
|
+
Logger.LOG_SRL_ = _medpython.cvar.Logger_LOG_SRL_
|
|
2022
|
+
Logger.LOG_MED_MODEL_ = _medpython.cvar.Logger_LOG_MED_MODEL_
|
|
2023
|
+
Logger.LOG_REPTYPE_ = _medpython.cvar.Logger_LOG_REPTYPE_
|
|
2024
|
+
Logger.MAX_LOG_SECTION_ = _medpython.cvar.Logger_MAX_LOG_SECTION_
|
|
2025
|
+
Logger.NO_LOG_LEVEL_ = _medpython.cvar.Logger_NO_LOG_LEVEL_
|
|
2026
|
+
Logger.MIN_LOG_LEVEL_ = _medpython.cvar.Logger_MIN_LOG_LEVEL_
|
|
2027
|
+
Logger.DEBUG_LOG_LEVEL_ = _medpython.cvar.Logger_DEBUG_LOG_LEVEL_
|
|
2028
|
+
Logger.LOG_DEF_LEVEL_ = _medpython.cvar.Logger_LOG_DEF_LEVEL_
|
|
2029
|
+
Logger.MAX_LOG_LEVEL_ = _medpython.cvar.Logger_MAX_LOG_LEVEL_
|
|
2030
|
+
Logger.VERBOSE_LOG_LEVEL_ = _medpython.cvar.Logger_VERBOSE_LOG_LEVEL_
|
|
2031
|
+
|
|
2032
|
+
class Mat(object):
|
|
2033
|
+
r"""Proxy of C++ MPMat class."""
|
|
2034
|
+
|
|
2035
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2036
|
+
__repr__ = _swig_repr
|
|
2037
|
+
|
|
2038
|
+
def __init__(self, *args):
|
|
2039
|
+
r"""
|
|
2040
|
+
__init__(Mat self) -> Mat
|
|
2041
|
+
__init__(Mat self, int n_rows, int n_cols) -> Mat
|
|
2042
|
+
__init__(Mat self, float * IN_ARRAY2) -> Mat
|
|
2043
|
+
"""
|
|
2044
|
+
_medpython.Mat_swiginit(self, _medpython.new_Mat(*args))
|
|
2045
|
+
__swig_destroy__ = _medpython.delete_Mat
|
|
2046
|
+
|
|
2047
|
+
def get_numpy_copy(self):
|
|
2048
|
+
r"""get_numpy_copy(Mat self)"""
|
|
2049
|
+
return _medpython.Mat_get_numpy_copy(self)
|
|
2050
|
+
|
|
2051
|
+
def get_numpy_view_unsafe(self):
|
|
2052
|
+
r"""get_numpy_view_unsafe(Mat self)"""
|
|
2053
|
+
return _medpython.Mat_get_numpy_view_unsafe(self)
|
|
2054
|
+
|
|
2055
|
+
def test(self, n_rows, n_cols):
|
|
2056
|
+
r"""test(Mat self, int n_rows, int n_cols)"""
|
|
2057
|
+
return _medpython.Mat_test(self, n_rows, n_cols)
|
|
2058
|
+
|
|
2059
|
+
def load_numpy(self, IN_ARRAY2):
|
|
2060
|
+
r"""load_numpy(Mat self, float * IN_ARRAY2)"""
|
|
2061
|
+
return _medpython.Mat_load_numpy(self, IN_ARRAY2)
|
|
2062
|
+
|
|
2063
|
+
@staticmethod
|
|
2064
|
+
def MEDPY_GET_Normalize_Cols():
|
|
2065
|
+
r"""MEDPY_GET_Normalize_Cols() -> int"""
|
|
2066
|
+
return _medpython.Mat_MEDPY_GET_Normalize_Cols()
|
|
2067
|
+
|
|
2068
|
+
@staticmethod
|
|
2069
|
+
def MEDPY_GET_Normalize_Rows():
|
|
2070
|
+
r"""MEDPY_GET_Normalize_Rows() -> int"""
|
|
2071
|
+
return _medpython.Mat_MEDPY_GET_Normalize_Rows()
|
|
2072
|
+
|
|
2073
|
+
def MEDPY_GET_nrows(self):
|
|
2074
|
+
r"""MEDPY_GET_nrows(Mat self) -> int"""
|
|
2075
|
+
return _medpython.Mat_MEDPY_GET_nrows(self)
|
|
2076
|
+
|
|
2077
|
+
def MEDPY_GET_ncols(self):
|
|
2078
|
+
r"""MEDPY_GET_ncols(Mat self) -> int"""
|
|
2079
|
+
return _medpython.Mat_MEDPY_GET_ncols(self)
|
|
2080
|
+
|
|
2081
|
+
def __len__(self):
|
|
2082
|
+
r"""__len__(Mat self) -> unsigned long long"""
|
|
2083
|
+
return _medpython.Mat___len__(self)
|
|
2084
|
+
|
|
2085
|
+
def is_valid(self, output=False):
|
|
2086
|
+
r"""is_valid(Mat self, bool output=False) -> bool"""
|
|
2087
|
+
return _medpython.Mat_is_valid(self, output)
|
|
2088
|
+
|
|
2089
|
+
def __getitem__(self, index):
|
|
2090
|
+
r"""__getitem__(Mat self, IntVector index) -> float"""
|
|
2091
|
+
return _medpython.Mat___getitem__(self, index)
|
|
2092
|
+
|
|
2093
|
+
def __setitem__(self, index, val):
|
|
2094
|
+
r"""__setitem__(Mat self, IntVector index, float val)"""
|
|
2095
|
+
return _medpython.Mat___setitem__(self, index, val)
|
|
2096
|
+
|
|
2097
|
+
def MEDPY_GET_row_ids(self):
|
|
2098
|
+
r"""MEDPY_GET_row_ids(Mat self)"""
|
|
2099
|
+
return _medpython.Mat_MEDPY_GET_row_ids(self)
|
|
2100
|
+
|
|
2101
|
+
def MEDPY_SET_row_ids(self, row_ids_buf):
|
|
2102
|
+
r"""MEDPY_SET_row_ids(Mat self, int * row_ids_buf)"""
|
|
2103
|
+
return _medpython.Mat_MEDPY_SET_row_ids(self, row_ids_buf)
|
|
2104
|
+
|
|
2105
|
+
def MEDPY_GET_signals(self):
|
|
2106
|
+
r"""MEDPY_GET_signals(Mat self) -> StringVector"""
|
|
2107
|
+
return _medpython.Mat_MEDPY_GET_signals(self)
|
|
2108
|
+
|
|
2109
|
+
def MEDPY_GET_avg(self):
|
|
2110
|
+
r"""MEDPY_GET_avg(Mat self)"""
|
|
2111
|
+
return _medpython.Mat_MEDPY_GET_avg(self)
|
|
2112
|
+
|
|
2113
|
+
def MEDPY_GET_std(self):
|
|
2114
|
+
r"""MEDPY_GET_std(Mat self)"""
|
|
2115
|
+
return _medpython.Mat_MEDPY_GET_std(self)
|
|
2116
|
+
|
|
2117
|
+
def MEDPY_GET_normalized_flag(self):
|
|
2118
|
+
r"""MEDPY_GET_normalized_flag(Mat self) -> int"""
|
|
2119
|
+
return _medpython.Mat_MEDPY_GET_normalized_flag(self)
|
|
2120
|
+
|
|
2121
|
+
def MEDPY_SET_normalized_flag(self, newval):
|
|
2122
|
+
r"""MEDPY_SET_normalized_flag(Mat self, int newval)"""
|
|
2123
|
+
return _medpython.Mat_MEDPY_SET_normalized_flag(self, newval)
|
|
2124
|
+
|
|
2125
|
+
def MEDPY_GET_transposed_flag(self):
|
|
2126
|
+
r"""MEDPY_GET_transposed_flag(Mat self) -> int"""
|
|
2127
|
+
return _medpython.Mat_MEDPY_GET_transposed_flag(self)
|
|
2128
|
+
|
|
2129
|
+
def MEDPY_SET_transposed_flag(self, newval):
|
|
2130
|
+
r"""MEDPY_SET_transposed_flag(Mat self, int newval)"""
|
|
2131
|
+
return _medpython.Mat_MEDPY_SET_transposed_flag(self, newval)
|
|
2132
|
+
|
|
2133
|
+
def MEDPY_GET_missing_value(self):
|
|
2134
|
+
r"""MEDPY_GET_missing_value(Mat self) -> float"""
|
|
2135
|
+
return _medpython.Mat_MEDPY_GET_missing_value(self)
|
|
2136
|
+
|
|
2137
|
+
def MEDPY_SET_missing_value(self, newval):
|
|
2138
|
+
r"""MEDPY_SET_missing_value(Mat self, float newval)"""
|
|
2139
|
+
return _medpython.Mat_MEDPY_SET_missing_value(self, newval)
|
|
2140
|
+
|
|
2141
|
+
def zero(self):
|
|
2142
|
+
r"""zero(Mat self)"""
|
|
2143
|
+
return _medpython.Mat_zero(self)
|
|
2144
|
+
|
|
2145
|
+
def set_val(self, val):
|
|
2146
|
+
r"""set_val(Mat self, float val)"""
|
|
2147
|
+
return _medpython.Mat_set_val(self, val)
|
|
2148
|
+
|
|
2149
|
+
def clear(self):
|
|
2150
|
+
r"""clear(Mat self)"""
|
|
2151
|
+
return _medpython.Mat_clear(self)
|
|
2152
|
+
|
|
2153
|
+
def resize(self, n_rows, n_cols):
|
|
2154
|
+
r"""resize(Mat self, int n_rows, int n_cols)"""
|
|
2155
|
+
return _medpython.Mat_resize(self, n_rows, n_cols)
|
|
2156
|
+
|
|
2157
|
+
def read_from_bin_file(self, fname):
|
|
2158
|
+
r"""read_from_bin_file(Mat self, string const & fname) -> int"""
|
|
2159
|
+
return _medpython.Mat_read_from_bin_file(self, fname)
|
|
2160
|
+
|
|
2161
|
+
def write_to_bin_file(self, fname):
|
|
2162
|
+
r"""write_to_bin_file(Mat self, string const & fname) -> int"""
|
|
2163
|
+
return _medpython.Mat_write_to_bin_file(self, fname)
|
|
2164
|
+
|
|
2165
|
+
def write_to_csv_file(self, fname):
|
|
2166
|
+
r"""write_to_csv_file(Mat self, string const & fname) -> int"""
|
|
2167
|
+
return _medpython.Mat_write_to_csv_file(self, fname)
|
|
2168
|
+
|
|
2169
|
+
def read_from_csv_file(self, fname, titles_line_flag):
|
|
2170
|
+
r"""read_from_csv_file(Mat self, string const & fname, int titles_line_flag) -> int"""
|
|
2171
|
+
return _medpython.Mat_read_from_csv_file(self, fname, titles_line_flag)
|
|
2172
|
+
|
|
2173
|
+
def transpose(self):
|
|
2174
|
+
r"""transpose(Mat self)"""
|
|
2175
|
+
return _medpython.Mat_transpose(self)
|
|
2176
|
+
|
|
2177
|
+
def get_sub_mat(self, rows_to_take, cols_to_take):
|
|
2178
|
+
r"""get_sub_mat(Mat self, IntVector rows_to_take, IntVector cols_to_take)"""
|
|
2179
|
+
return _medpython.Mat_get_sub_mat(self, rows_to_take, cols_to_take)
|
|
2180
|
+
|
|
2181
|
+
def get_sub_mat_by_flags(self, rows_to_take_flag, cols_to_take_flag):
|
|
2182
|
+
r"""get_sub_mat_by_flags(Mat self, IntVector rows_to_take_flag, IntVector cols_to_take_flag)"""
|
|
2183
|
+
return _medpython.Mat_get_sub_mat_by_flags(self, rows_to_take_flag, cols_to_take_flag)
|
|
2184
|
+
|
|
2185
|
+
def add_rows(self, *args):
|
|
2186
|
+
r"""
|
|
2187
|
+
add_rows(Mat self, Mat m_add)
|
|
2188
|
+
add_rows(Mat self, float * m_add)
|
|
2189
|
+
"""
|
|
2190
|
+
return _medpython.Mat_add_rows(self, *args)
|
|
2191
|
+
|
|
2192
|
+
def add_cols(self, *args):
|
|
2193
|
+
r"""
|
|
2194
|
+
add_cols(Mat self, Mat m_add)
|
|
2195
|
+
add_cols(Mat self, float * m_add)
|
|
2196
|
+
"""
|
|
2197
|
+
return _medpython.Mat_add_cols(self, *args)
|
|
2198
|
+
|
|
2199
|
+
def get_row(self, i_row):
|
|
2200
|
+
r"""get_row(Mat self, int i_row)"""
|
|
2201
|
+
return _medpython.Mat_get_row(self, i_row)
|
|
2202
|
+
|
|
2203
|
+
def get_col(self, i_col):
|
|
2204
|
+
r"""get_col(Mat self, int i_col)"""
|
|
2205
|
+
return _medpython.Mat_get_col(self, i_col)
|
|
2206
|
+
|
|
2207
|
+
def normalize(self, *args):
|
|
2208
|
+
r"""
|
|
2209
|
+
normalize(Mat self, int norm_type, float * wgts)
|
|
2210
|
+
normalize(Mat self, int norm_type=Normalize_Cols)
|
|
2211
|
+
normalize(Mat self, float * external_avg, float * external_std, int norm_type=1)
|
|
2212
|
+
"""
|
|
2213
|
+
return _medpython.Mat_normalize(self, *args)
|
|
2214
|
+
|
|
2215
|
+
def get_cols_avg_std(self):
|
|
2216
|
+
r"""get_cols_avg_std(Mat self)"""
|
|
2217
|
+
return _medpython.Mat_get_cols_avg_std(self)
|
|
2218
|
+
|
|
2219
|
+
def set_signals(self, sigs):
|
|
2220
|
+
r"""set_signals(Mat self, StringVector sigs)"""
|
|
2221
|
+
return _medpython.Mat_set_signals(self, sigs)
|
|
2222
|
+
|
|
2223
|
+
def load_transposed(self, IN_ARRAY2):
|
|
2224
|
+
r"""load_transposed(Mat self, float * IN_ARRAY2)"""
|
|
2225
|
+
return _medpython.Mat_load_transposed(self, IN_ARRAY2)
|
|
2226
|
+
|
|
2227
|
+
def load(self, *args):
|
|
2228
|
+
r"""
|
|
2229
|
+
load(Mat self, float * IN_ARRAY2)
|
|
2230
|
+
load(Mat self, Mat x)
|
|
2231
|
+
"""
|
|
2232
|
+
return _medpython.Mat_load(self, *args)
|
|
2233
|
+
|
|
2234
|
+
def asSerializable(self):
|
|
2235
|
+
r"""asSerializable(Mat self) -> SerializableObject"""
|
|
2236
|
+
return _medpython.Mat_asSerializable(self)
|
|
2237
|
+
|
|
2238
|
+
Normalize_Cols = property(MEDPY_GET_Normalize_Cols,None)
|
|
2239
|
+
Normalize_Rows = property(MEDPY_GET_Normalize_Rows,None)
|
|
2240
|
+
nrows = property(MEDPY_GET_nrows,None)
|
|
2241
|
+
ncols = property(MEDPY_GET_ncols,None)
|
|
2242
|
+
row_ids = property(MEDPY_GET_row_ids,MEDPY_SET_row_ids)
|
|
2243
|
+
signals = property(MEDPY_GET_signals,None)
|
|
2244
|
+
avg = property(MEDPY_GET_avg,None)
|
|
2245
|
+
std = property(MEDPY_GET_std,None)
|
|
2246
|
+
normalized_flag = property(MEDPY_GET_normalized_flag,MEDPY_SET_normalized_flag)
|
|
2247
|
+
transposed_flag = property(MEDPY_GET_transposed_flag,MEDPY_SET_transposed_flag)
|
|
2248
|
+
missing_value = property(MEDPY_GET_missing_value,MEDPY_SET_missing_value)
|
|
2249
|
+
|
|
2250
|
+
|
|
2251
|
+
# Register Mat in _medpython:
|
|
2252
|
+
_medpython.Mat_swigregister(Mat)
|
|
2253
|
+
Mat.Normalize_Cols = _medpython.cvar.Mat_Normalize_Cols
|
|
2254
|
+
Mat.Normalize_Rows = _medpython.cvar.Mat_Normalize_Rows
|
|
2255
|
+
Mat.MISSING_VALUE = _medpython.cvar.Mat_MISSING_VALUE
|
|
2256
|
+
|
|
2257
|
+
class ModelStage(object):
|
|
2258
|
+
r"""Proxy of C++ MPModelStage class."""
|
|
2259
|
+
|
|
2260
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2261
|
+
__repr__ = _swig_repr
|
|
2262
|
+
|
|
2263
|
+
def __init__(self):
|
|
2264
|
+
r"""__init__(ModelStage self) -> ModelStage"""
|
|
2265
|
+
_medpython.ModelStage_swiginit(self, _medpython.new_ModelStage())
|
|
2266
|
+
__swig_destroy__ = _medpython.delete_ModelStage
|
|
2267
|
+
|
|
2268
|
+
# Register ModelStage in _medpython:
|
|
2269
|
+
_medpython.ModelStage_swigregister(ModelStage)
|
|
2270
|
+
ModelStage.LEARN_REP_PROCESSORS = _medpython.cvar.ModelStage_LEARN_REP_PROCESSORS
|
|
2271
|
+
ModelStage.LEARN_FTR_GENERATORS = _medpython.cvar.ModelStage_LEARN_FTR_GENERATORS
|
|
2272
|
+
ModelStage.APPLY_FTR_GENERATORS = _medpython.cvar.ModelStage_APPLY_FTR_GENERATORS
|
|
2273
|
+
ModelStage.LEARN_FTR_PROCESSORS = _medpython.cvar.ModelStage_LEARN_FTR_PROCESSORS
|
|
2274
|
+
ModelStage.APPLY_FTR_PROCESSORS = _medpython.cvar.ModelStage_APPLY_FTR_PROCESSORS
|
|
2275
|
+
ModelStage.LEARN_PREDICTOR = _medpython.cvar.ModelStage_LEARN_PREDICTOR
|
|
2276
|
+
ModelStage.APPLY_PREDICTOR = _medpython.cvar.ModelStage_APPLY_PREDICTOR
|
|
2277
|
+
ModelStage.INSERT_PREDS = _medpython.cvar.ModelStage_INSERT_PREDS
|
|
2278
|
+
ModelStage.LEARN_POST_PROCESSORS = _medpython.cvar.ModelStage_LEARN_POST_PROCESSORS
|
|
2279
|
+
ModelStage.APPLY_POST_PROCESSORS = _medpython.cvar.ModelStage_APPLY_POST_PROCESSORS
|
|
2280
|
+
ModelStage.END = _medpython.cvar.ModelStage_END
|
|
2281
|
+
|
|
2282
|
+
class Model(object):
|
|
2283
|
+
r"""Proxy of C++ MPModel class."""
|
|
2284
|
+
|
|
2285
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2286
|
+
__repr__ = _swig_repr
|
|
2287
|
+
|
|
2288
|
+
def __init__(self):
|
|
2289
|
+
r"""__init__(Model self) -> Model"""
|
|
2290
|
+
_medpython.Model_swiginit(self, _medpython.new_Model())
|
|
2291
|
+
__swig_destroy__ = _medpython.delete_Model
|
|
2292
|
+
|
|
2293
|
+
def init_from_json_file(self, fname):
|
|
2294
|
+
r"""init_from_json_file(Model self, std::string const & fname)"""
|
|
2295
|
+
return _medpython.Model_init_from_json_file(self, fname)
|
|
2296
|
+
|
|
2297
|
+
def init_from_json_file_with_alterations(self, fname, json_alt):
|
|
2298
|
+
r"""init_from_json_file_with_alterations(Model self, std::string const & fname, StringVector json_alt) -> StringVector"""
|
|
2299
|
+
return _medpython.Model_init_from_json_file_with_alterations(self, fname, json_alt)
|
|
2300
|
+
|
|
2301
|
+
def add_pre_processors_json_string_to_model(self, in_json, fname, add_rep_first):
|
|
2302
|
+
r"""add_pre_processors_json_string_to_model(Model self, std::string const & in_json, std::string const & fname, bool add_rep_first)"""
|
|
2303
|
+
return _medpython.Model_add_pre_processors_json_string_to_model(self, in_json, fname, add_rep_first)
|
|
2304
|
+
|
|
2305
|
+
def add_post_processors_json_string_to_model(self, in_json, fname):
|
|
2306
|
+
r"""add_post_processors_json_string_to_model(Model self, std::string const & in_json, std::string const & fname)"""
|
|
2307
|
+
return _medpython.Model_add_post_processors_json_string_to_model(self, in_json, fname)
|
|
2308
|
+
|
|
2309
|
+
def get_required_signal_names(self):
|
|
2310
|
+
r"""get_required_signal_names(Model self) -> StringVector"""
|
|
2311
|
+
return _medpython.Model_get_required_signal_names(self)
|
|
2312
|
+
|
|
2313
|
+
def learn(self, *args):
|
|
2314
|
+
r"""
|
|
2315
|
+
learn(Model self, PidRepository rep, Samples samples) -> int
|
|
2316
|
+
learn(Model self, PidRepository rep, Samples samples, int start_stage, int end_stage) -> int
|
|
2317
|
+
"""
|
|
2318
|
+
return _medpython.Model_learn(self, *args)
|
|
2319
|
+
|
|
2320
|
+
def apply(self, *args):
|
|
2321
|
+
r"""
|
|
2322
|
+
apply(Model self, PidRepository rep, Samples samples) -> int
|
|
2323
|
+
apply(Model self, PidRepository rep, Samples samples, int start_stage, int end_stage) -> int
|
|
2324
|
+
"""
|
|
2325
|
+
return _medpython.Model_apply(self, *args)
|
|
2326
|
+
|
|
2327
|
+
def write_to_file(self, fname):
|
|
2328
|
+
r"""write_to_file(Model self, std::string const & fname) -> int"""
|
|
2329
|
+
return _medpython.Model_write_to_file(self, fname)
|
|
2330
|
+
|
|
2331
|
+
def read_from_file(self, fname):
|
|
2332
|
+
r"""read_from_file(Model self, std::string const & fname) -> int"""
|
|
2333
|
+
return _medpython.Model_read_from_file(self, fname)
|
|
2334
|
+
|
|
2335
|
+
def MEDPY_GET_features(self):
|
|
2336
|
+
r"""MEDPY_GET_features(Model self) -> Features"""
|
|
2337
|
+
return _medpython.Model_MEDPY_GET_features(self)
|
|
2338
|
+
|
|
2339
|
+
def MEDPY_GET_predictor(self):
|
|
2340
|
+
r"""MEDPY_GET_predictor(Model self) -> Predictor"""
|
|
2341
|
+
return _medpython.Model_MEDPY_GET_predictor(self)
|
|
2342
|
+
|
|
2343
|
+
def clear(self):
|
|
2344
|
+
r"""clear(Model self)"""
|
|
2345
|
+
return _medpython.Model_clear(self)
|
|
2346
|
+
|
|
2347
|
+
def MEDPY_GET_verbosity(self):
|
|
2348
|
+
r"""MEDPY_GET_verbosity(Model self) -> int"""
|
|
2349
|
+
return _medpython.Model_MEDPY_GET_verbosity(self)
|
|
2350
|
+
|
|
2351
|
+
def MEDPY_SET_verbosity(self, new_vval):
|
|
2352
|
+
r"""MEDPY_SET_verbosity(Model self, int new_vval)"""
|
|
2353
|
+
return _medpython.Model_MEDPY_SET_verbosity(self, new_vval)
|
|
2354
|
+
|
|
2355
|
+
def add_feature_generator(self, name, signal):
|
|
2356
|
+
r"""add_feature_generator(Model self, std::string & name, std::string & signal)"""
|
|
2357
|
+
return _medpython.Model_add_feature_generator(self, name, signal)
|
|
2358
|
+
|
|
2359
|
+
def add_feature_generators(self, *args):
|
|
2360
|
+
r"""
|
|
2361
|
+
add_feature_generators(Model self, std::string & name, StringVector signals)
|
|
2362
|
+
add_feature_generators(Model self, std::string & name, StringVector signals, string init_string)
|
|
2363
|
+
add_feature_generators(Model self, std::string & name, std::string & signal, std::string init_string)
|
|
2364
|
+
"""
|
|
2365
|
+
return _medpython.Model_add_feature_generators(self, *args)
|
|
2366
|
+
|
|
2367
|
+
def add_age(self):
|
|
2368
|
+
r"""add_age(Model self)"""
|
|
2369
|
+
return _medpython.Model_add_age(self)
|
|
2370
|
+
|
|
2371
|
+
def add_gender(self):
|
|
2372
|
+
r"""add_gender(Model self)"""
|
|
2373
|
+
return _medpython.Model_add_gender(self)
|
|
2374
|
+
|
|
2375
|
+
def get_all_features_names(self, feat_names, before_process_set):
|
|
2376
|
+
r"""get_all_features_names(Model self, StringVector feat_names, int before_process_set)"""
|
|
2377
|
+
return _medpython.Model_get_all_features_names(self, feat_names, before_process_set)
|
|
2378
|
+
|
|
2379
|
+
def add_normalizers(self, *args):
|
|
2380
|
+
r"""
|
|
2381
|
+
add_normalizers(Model self)
|
|
2382
|
+
add_normalizers(Model self, std::string init_string)
|
|
2383
|
+
add_normalizers(Model self, StringVector features)
|
|
2384
|
+
add_normalizers(Model self, StringVector features, std::string init_string)
|
|
2385
|
+
"""
|
|
2386
|
+
return _medpython.Model_add_normalizers(self, *args)
|
|
2387
|
+
|
|
2388
|
+
def add_imputers(self, *args):
|
|
2389
|
+
r"""
|
|
2390
|
+
add_imputers(Model self)
|
|
2391
|
+
add_imputers(Model self, std::string init_string)
|
|
2392
|
+
add_imputers(Model self, StringVector features)
|
|
2393
|
+
add_imputers(Model self, StringVector features, std::string init_string)
|
|
2394
|
+
"""
|
|
2395
|
+
return _medpython.Model_add_imputers(self, *args)
|
|
2396
|
+
|
|
2397
|
+
def add_rep_processor_to_set(self, i_set, init_string):
|
|
2398
|
+
r"""add_rep_processor_to_set(Model self, int i_set, std::string const & init_string)"""
|
|
2399
|
+
return _medpython.Model_add_rep_processor_to_set(self, i_set, init_string)
|
|
2400
|
+
|
|
2401
|
+
def add_feature_generator_to_set(self, i_set, init_string):
|
|
2402
|
+
r"""add_feature_generator_to_set(Model self, int i_set, std::string const & init_string)"""
|
|
2403
|
+
return _medpython.Model_add_feature_generator_to_set(self, i_set, init_string)
|
|
2404
|
+
|
|
2405
|
+
def add_feature_processor_to_set(self, i_set, duplicate, init_string):
|
|
2406
|
+
r"""add_feature_processor_to_set(Model self, int i_set, int duplicate, std::string const & init_string)"""
|
|
2407
|
+
return _medpython.Model_add_feature_processor_to_set(self, i_set, duplicate, init_string)
|
|
2408
|
+
|
|
2409
|
+
def add_process_to_set(self, *args):
|
|
2410
|
+
r"""
|
|
2411
|
+
add_process_to_set(Model self, int i_set, int duplicate, std::string const & init_string)
|
|
2412
|
+
add_process_to_set(Model self, int i_set, std::string const & init_string)
|
|
2413
|
+
"""
|
|
2414
|
+
return _medpython.Model_add_process_to_set(self, *args)
|
|
2415
|
+
|
|
2416
|
+
def make_predictor(self, name):
|
|
2417
|
+
r"""make_predictor(Model self, std::string name)"""
|
|
2418
|
+
return _medpython.Model_make_predictor(self, name)
|
|
2419
|
+
|
|
2420
|
+
def set_predictor(self, *args):
|
|
2421
|
+
r"""
|
|
2422
|
+
set_predictor(Model self, Predictor _predictor)
|
|
2423
|
+
set_predictor(Model self, std::string name, std::string init_string)
|
|
2424
|
+
"""
|
|
2425
|
+
return _medpython.Model_set_predictor(self, *args)
|
|
2426
|
+
|
|
2427
|
+
def collect_and_add_virtual_signals(self, rep):
|
|
2428
|
+
r"""collect_and_add_virtual_signals(Model self, PidRepository rep) -> int"""
|
|
2429
|
+
return _medpython.Model_collect_and_add_virtual_signals(self, rep)
|
|
2430
|
+
|
|
2431
|
+
def quick_learn_rep_processors(self, rep, samples):
|
|
2432
|
+
r"""quick_learn_rep_processors(Model self, PidRepository rep, Samples samples) -> int"""
|
|
2433
|
+
return _medpython.Model_quick_learn_rep_processors(self, rep, samples)
|
|
2434
|
+
|
|
2435
|
+
def learn_rep_processors(self, rep, samples):
|
|
2436
|
+
r"""learn_rep_processors(Model self, PidRepository rep, Samples samples) -> int"""
|
|
2437
|
+
return _medpython.Model_learn_rep_processors(self, rep, samples)
|
|
2438
|
+
|
|
2439
|
+
def filter_rep_processors(self):
|
|
2440
|
+
r"""filter_rep_processors(Model self)"""
|
|
2441
|
+
return _medpython.Model_filter_rep_processors(self)
|
|
2442
|
+
|
|
2443
|
+
def learn_feature_generators(self, rep, learn_samples):
|
|
2444
|
+
r"""learn_feature_generators(Model self, PidRepository rep, Samples learn_samples) -> int"""
|
|
2445
|
+
return _medpython.Model_learn_feature_generators(self, rep, learn_samples)
|
|
2446
|
+
|
|
2447
|
+
def generate_all_features(self, rep, samples, features, req_feature_generators):
|
|
2448
|
+
r"""generate_all_features(Model self, PidRepository rep, Samples samples, Features features, StringVector req_feature_generators) -> int"""
|
|
2449
|
+
return _medpython.Model_generate_all_features(self, rep, samples, features, req_feature_generators)
|
|
2450
|
+
|
|
2451
|
+
def learn_and_apply_feature_processors(self, features):
|
|
2452
|
+
r"""learn_and_apply_feature_processors(Model self, Features features) -> int"""
|
|
2453
|
+
return _medpython.Model_learn_and_apply_feature_processors(self, features)
|
|
2454
|
+
|
|
2455
|
+
def learn_feature_processors(self, features):
|
|
2456
|
+
r"""learn_feature_processors(Model self, Features features) -> int"""
|
|
2457
|
+
return _medpython.Model_learn_feature_processors(self, features)
|
|
2458
|
+
|
|
2459
|
+
def apply_feature_processors(self, features, learning):
|
|
2460
|
+
r"""apply_feature_processors(Model self, Features features, bool learning) -> int"""
|
|
2461
|
+
return _medpython.Model_apply_feature_processors(self, features, learning)
|
|
2462
|
+
|
|
2463
|
+
def fit_for_repository(self, rep):
|
|
2464
|
+
r"""fit_for_repository(Model self, PidRepository rep)"""
|
|
2465
|
+
return _medpython.Model_fit_for_repository(self, rep)
|
|
2466
|
+
|
|
2467
|
+
def calc_contribs(self, mat, mat_out):
|
|
2468
|
+
r"""calc_contribs(Model self, Mat mat, Mat mat_out)"""
|
|
2469
|
+
return _medpython.Model_calc_contribs(self, mat, mat_out)
|
|
2470
|
+
|
|
2471
|
+
def calc_feature_contribs_conditional(self, mat_x_in, features_cond_string, features_cond_float, mat_x_out, mat_contribs):
|
|
2472
|
+
r"""calc_feature_contribs_conditional(Model self, Mat mat_x_in, std::string const & features_cond_string, float features_cond_float, Mat mat_x_out, Mat mat_contribs)"""
|
|
2473
|
+
return _medpython.Model_calc_feature_contribs_conditional(self, mat_x_in, features_cond_string, features_cond_float, mat_x_out, mat_contribs)
|
|
2474
|
+
|
|
2475
|
+
def dprint_process(self, pref, rp_flag, fg_flag, fp_flag, pp_flag, predictor_type):
|
|
2476
|
+
r"""dprint_process(Model self, std::string const & pref, int rp_flag, int fg_flag, int fp_flag, bool pp_flag, bool predictor_type)"""
|
|
2477
|
+
return _medpython.Model_dprint_process(self, pref, rp_flag, fg_flag, fp_flag, pp_flag, predictor_type)
|
|
2478
|
+
|
|
2479
|
+
def write_feature_matrix(self, mat_fname):
|
|
2480
|
+
r"""write_feature_matrix(Model self, std::string const mat_fname) -> int"""
|
|
2481
|
+
return _medpython.Model_write_feature_matrix(self, mat_fname)
|
|
2482
|
+
|
|
2483
|
+
def asSerializable(self):
|
|
2484
|
+
r"""asSerializable(Model self) -> SerializableObject"""
|
|
2485
|
+
return _medpython.Model_asSerializable(self)
|
|
2486
|
+
|
|
2487
|
+
def apply_model_change(self, change_json_content):
|
|
2488
|
+
r"""apply_model_change(Model self, std::string const & change_json_content)"""
|
|
2489
|
+
return _medpython.Model_apply_model_change(self, change_json_content)
|
|
2490
|
+
|
|
2491
|
+
def get_model_weights_info(self):
|
|
2492
|
+
r"""get_model_weights_info(Model self) -> std::string"""
|
|
2493
|
+
return _medpython.Model_get_model_weights_info(self)
|
|
2494
|
+
|
|
2495
|
+
def get_model_version_info(self):
|
|
2496
|
+
r"""get_model_version_info(Model self) -> std::string"""
|
|
2497
|
+
return _medpython.Model_get_model_version_info(self)
|
|
2498
|
+
|
|
2499
|
+
def get_model_processors_info(self):
|
|
2500
|
+
r"""get_model_processors_info(Model self) -> std::string"""
|
|
2501
|
+
return _medpython.Model_get_model_processors_info(self)
|
|
2502
|
+
|
|
2503
|
+
def train_rep_processor_by_index(self, index, rep, samples):
|
|
2504
|
+
r"""train_rep_processor_by_index(Model self, int index, PidRepository rep, Samples samples)"""
|
|
2505
|
+
return _medpython.Model_train_rep_processor_by_index(self, index, rep, samples)
|
|
2506
|
+
|
|
2507
|
+
def print_rep_processor_by_index(self, index):
|
|
2508
|
+
r"""print_rep_processor_by_index(Model self, int index) -> std::string"""
|
|
2509
|
+
return _medpython.Model_print_rep_processor_by_index(self, index)
|
|
2510
|
+
|
|
2511
|
+
def delete_rep_processor_by_index(self, index):
|
|
2512
|
+
r"""delete_rep_processor_by_index(Model self, int index)"""
|
|
2513
|
+
return _medpython.Model_delete_rep_processor_by_index(self, index)
|
|
2514
|
+
|
|
2515
|
+
def print_feature_generator_by_index(self, index):
|
|
2516
|
+
r"""print_feature_generator_by_index(Model self, int index) -> std::string"""
|
|
2517
|
+
return _medpython.Model_print_feature_generator_by_index(self, index)
|
|
2518
|
+
|
|
2519
|
+
def print_feature_processor_by_index(self, index):
|
|
2520
|
+
r"""print_feature_processor_by_index(Model self, int index) -> std::string"""
|
|
2521
|
+
return _medpython.Model_print_feature_processor_by_index(self, index)
|
|
2522
|
+
|
|
2523
|
+
def delete_feature_processor_by_index(self, index):
|
|
2524
|
+
r"""delete_feature_processor_by_index(Model self, int index)"""
|
|
2525
|
+
return _medpython.Model_delete_feature_processor_by_index(self, index)
|
|
2526
|
+
|
|
2527
|
+
def print_post_processor_by_index(self, index):
|
|
2528
|
+
r"""print_post_processor_by_index(Model self, int index) -> std::string"""
|
|
2529
|
+
return _medpython.Model_print_post_processor_by_index(self, index)
|
|
2530
|
+
|
|
2531
|
+
def delete_post_processor_by_index(self, index):
|
|
2532
|
+
r"""delete_post_processor_by_index(Model self, int index)"""
|
|
2533
|
+
return _medpython.Model_delete_post_processor_by_index(self, index)
|
|
2534
|
+
|
|
2535
|
+
def train_post_processor_by_index(self, index, features):
|
|
2536
|
+
r"""train_post_processor_by_index(Model self, int index, Features features)"""
|
|
2537
|
+
return _medpython.Model_train_post_processor_by_index(self, index, features)
|
|
2538
|
+
|
|
2539
|
+
def debug_rep_processor_signal(self, rep, signal_name, pid, prediction_time):
|
|
2540
|
+
r"""debug_rep_processor_signal(Model self, PidRepository rep, std::string & signal_name, int pid, int prediction_time) -> SigVectorAdaptor"""
|
|
2541
|
+
return _medpython.Model_debug_rep_processor_signal(self, rep, signal_name, pid, prediction_time)
|
|
2542
|
+
|
|
2543
|
+
features = property(MEDPY_GET_features,None)
|
|
2544
|
+
predictor = property(MEDPY_GET_predictor,None)
|
|
2545
|
+
verbosity = property(MEDPY_GET_verbosity,MEDPY_SET_verbosity)
|
|
2546
|
+
|
|
2547
|
+
|
|
2548
|
+
# Register Model in _medpython:
|
|
2549
|
+
_medpython.Model_swigregister(Model)
|
|
2550
|
+
class PandasAdaptor(object):
|
|
2551
|
+
r"""Proxy of C++ MPPandasAdaptor class."""
|
|
2552
|
+
|
|
2553
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2554
|
+
__repr__ = _swig_repr
|
|
2555
|
+
type_requirements = property(_medpython.PandasAdaptor_type_requirements_get, _medpython.PandasAdaptor_type_requirements_set, doc=r"""type_requirements : MPStringStringMapAdaptor""")
|
|
2556
|
+
|
|
2557
|
+
def keys(self):
|
|
2558
|
+
r"""keys(PandasAdaptor self) -> StringVector"""
|
|
2559
|
+
return _medpython.PandasAdaptor_keys(self)
|
|
2560
|
+
__swig_destroy__ = _medpython.delete_PandasAdaptor
|
|
2561
|
+
|
|
2562
|
+
def clear(self):
|
|
2563
|
+
r"""clear(PandasAdaptor self)"""
|
|
2564
|
+
return _medpython.PandasAdaptor_clear(self)
|
|
2565
|
+
|
|
2566
|
+
def export_column(self, key):
|
|
2567
|
+
r"""export_column(PandasAdaptor self, std::string const & key)"""
|
|
2568
|
+
return _medpython.PandasAdaptor_export_column(self, key)
|
|
2569
|
+
|
|
2570
|
+
def __getitem__(self, key):
|
|
2571
|
+
r"""__getitem__(PandasAdaptor self, std::string const & key)"""
|
|
2572
|
+
return _medpython.PandasAdaptor___getitem__(self, key)
|
|
2573
|
+
|
|
2574
|
+
def __iter__(self):
|
|
2575
|
+
r"""__iter__(PandasAdaptor self) -> MPPandasAdaptor_iter"""
|
|
2576
|
+
return _medpython.PandasAdaptor___iter__(self)
|
|
2577
|
+
|
|
2578
|
+
def get_categorial_col_dict(self, col_name):
|
|
2579
|
+
r"""get_categorial_col_dict(PandasAdaptor self, std::string const & col_name) -> IntStringMapAdaptor"""
|
|
2580
|
+
return _medpython.PandasAdaptor_get_categorial_col_dict(self, col_name)
|
|
2581
|
+
|
|
2582
|
+
def get_categorical_cols(self):
|
|
2583
|
+
r"""get_categorical_cols(PandasAdaptor self) -> StringVector"""
|
|
2584
|
+
return _medpython.PandasAdaptor_get_categorical_cols(self)
|
|
2585
|
+
|
|
2586
|
+
def import_column(self, col_name, IN_ARRAY1, make_a_copy=False):
|
|
2587
|
+
r"""import_column(PandasAdaptor self, string const & col_name, void * IN_ARRAY1, bool make_a_copy=False)"""
|
|
2588
|
+
return _medpython.PandasAdaptor_import_column(self, col_name, IN_ARRAY1, make_a_copy)
|
|
2589
|
+
|
|
2590
|
+
def __init__(self):
|
|
2591
|
+
r"""__init__(PandasAdaptor self) -> PandasAdaptor"""
|
|
2592
|
+
_medpython.PandasAdaptor_swiginit(self, _medpython.new_PandasAdaptor())
|
|
2593
|
+
|
|
2594
|
+
# Register PandasAdaptor in _medpython:
|
|
2595
|
+
_medpython.PandasAdaptor_swigregister(PandasAdaptor)
|
|
2596
|
+
class MPPandasAdaptor_iter(object):
|
|
2597
|
+
r"""Proxy of C++ MPPandasAdaptor_iter class."""
|
|
2598
|
+
|
|
2599
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2600
|
+
|
|
2601
|
+
def __init__(self, *args):
|
|
2602
|
+
r"""
|
|
2603
|
+
__init__(MPPandasAdaptor_iter self, PandasAdaptor o, StringVector keys_param) -> MPPandasAdaptor_iter
|
|
2604
|
+
__init__(MPPandasAdaptor_iter self, MPPandasAdaptor_iter orig) -> MPPandasAdaptor_iter
|
|
2605
|
+
"""
|
|
2606
|
+
_medpython.MPPandasAdaptor_iter_swiginit(self, _medpython.new_MPPandasAdaptor_iter(*args))
|
|
2607
|
+
|
|
2608
|
+
def next(self):
|
|
2609
|
+
r"""next(MPPandasAdaptor_iter self) -> std::string"""
|
|
2610
|
+
return _medpython.MPPandasAdaptor_iter_next(self)
|
|
2611
|
+
|
|
2612
|
+
def __repr__(self):
|
|
2613
|
+
r"""__repr__(MPPandasAdaptor_iter self) -> std::string"""
|
|
2614
|
+
return _medpython.MPPandasAdaptor_iter___repr__(self)
|
|
2615
|
+
__swig_destroy__ = _medpython.delete_MPPandasAdaptor_iter
|
|
2616
|
+
|
|
2617
|
+
# Register MPPandasAdaptor_iter in _medpython:
|
|
2618
|
+
_medpython.MPPandasAdaptor_iter_swigregister(MPPandasAdaptor_iter)
|
|
2619
|
+
class PidRepository(object):
|
|
2620
|
+
r"""Proxy of C++ MPPidRepository class."""
|
|
2621
|
+
|
|
2622
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2623
|
+
__repr__ = _swig_repr
|
|
2624
|
+
dict = property(_medpython.PidRepository_dict_get, _medpython.PidRepository_dict_set, doc=r"""dict : MPDictionary""")
|
|
2625
|
+
|
|
2626
|
+
def __init__(self):
|
|
2627
|
+
r"""__init__(PidRepository self) -> PidRepository"""
|
|
2628
|
+
_medpython.PidRepository_swiginit(self, _medpython.new_PidRepository())
|
|
2629
|
+
__swig_destroy__ = _medpython.delete_PidRepository
|
|
2630
|
+
|
|
2631
|
+
def read_all(self, *args):
|
|
2632
|
+
r"""
|
|
2633
|
+
read_all(conf_file_fname, [pids_to_take_array], [list_str_signals_to_take]) -> int
|
|
2634
|
+
returns -1 if fails
|
|
2635
|
+
reading a repository for a group of pids and signals.Empty group means all of it.read_all(conf_file_fname, [pids_to_take_array], [list_str_signals_to_take]) -> int
|
|
2636
|
+
returns -1 if fails
|
|
2637
|
+
reading a repository for a group of pids and signals.Empty group means all of it.
|
|
2638
|
+
"""
|
|
2639
|
+
return _medpython.PidRepository_read_all(self, *args)
|
|
2640
|
+
|
|
2641
|
+
def read_all_i(self, conf_fname, pids_to_take, signals_to_take):
|
|
2642
|
+
r"""read_all_i(PidRepository self, std::string const & conf_fname, IntVector pids_to_take, IntVector signals_to_take) -> int"""
|
|
2643
|
+
return _medpython.PidRepository_read_all_i(self, conf_fname, pids_to_take, signals_to_take)
|
|
2644
|
+
|
|
2645
|
+
def init(self, conf_fname):
|
|
2646
|
+
r"""
|
|
2647
|
+
init(conf_file_name) -> int
|
|
2648
|
+
returns -1 if fails
|
|
2649
|
+
"""
|
|
2650
|
+
return _medpython.PidRepository_init(self, conf_fname)
|
|
2651
|
+
|
|
2652
|
+
def loadsig(self, signame):
|
|
2653
|
+
r"""
|
|
2654
|
+
loadsig(str_signame) -> int
|
|
2655
|
+
load a signal
|
|
2656
|
+
"""
|
|
2657
|
+
return _medpython.PidRepository_loadsig(self, signame)
|
|
2658
|
+
|
|
2659
|
+
def loadsig_pids(self, signame, pids_to_take):
|
|
2660
|
+
r"""loadsig_pids(PidRepository self, std::string const & signame, int * pids_to_take) -> int"""
|
|
2661
|
+
return _medpython.PidRepository_loadsig_pids(self, signame, pids_to_take)
|
|
2662
|
+
|
|
2663
|
+
def list_signals(self):
|
|
2664
|
+
r"""list_signals(PidRepository self) -> StringVector"""
|
|
2665
|
+
return _medpython.PidRepository_list_signals(self)
|
|
2666
|
+
|
|
2667
|
+
def sig_id(self, signame):
|
|
2668
|
+
r"""
|
|
2669
|
+
sig_id(str_signame) -> int
|
|
2670
|
+
returns signal id number for a given signal name
|
|
2671
|
+
"""
|
|
2672
|
+
return _medpython.PidRepository_sig_id(self, signame)
|
|
2673
|
+
|
|
2674
|
+
def sig_type(self, signame):
|
|
2675
|
+
r"""
|
|
2676
|
+
sig_type(str_signame) -> int
|
|
2677
|
+
returns signal type
|
|
2678
|
+
"""
|
|
2679
|
+
return _medpython.PidRepository_sig_type(self, signame)
|
|
2680
|
+
|
|
2681
|
+
def sig_description(self, signame):
|
|
2682
|
+
r"""
|
|
2683
|
+
sig_description(str_signame) -> string
|
|
2684
|
+
returns signal string description
|
|
2685
|
+
"""
|
|
2686
|
+
return _medpython.PidRepository_sig_description(self, signame)
|
|
2687
|
+
|
|
2688
|
+
def is_categorical(self, signame, val_channel):
|
|
2689
|
+
r"""
|
|
2690
|
+
is_categorical(str_signame, int_val_channel) -> bool
|
|
2691
|
+
returns True is channel is categorical
|
|
2692
|
+
"""
|
|
2693
|
+
return _medpython.PidRepository_is_categorical(self, signame, val_channel)
|
|
2694
|
+
|
|
2695
|
+
def MEDPY_GET_pids(self):
|
|
2696
|
+
r"""MEDPY_GET_pids(PidRepository self) -> IntVector"""
|
|
2697
|
+
return _medpython.PidRepository_MEDPY_GET_pids(self)
|
|
2698
|
+
|
|
2699
|
+
def uget(self, pid, sid):
|
|
2700
|
+
r"""
|
|
2701
|
+
uget(int_pid, int_sid) -> SigVectorAdaptor
|
|
2702
|
+
returns a vector of universal signals
|
|
2703
|
+
"""
|
|
2704
|
+
return _medpython.PidRepository_uget(self, pid, sid)
|
|
2705
|
+
|
|
2706
|
+
def dict_section_id(self, secName):
|
|
2707
|
+
r"""
|
|
2708
|
+
dict_section_id(str_secName) -> int
|
|
2709
|
+
returns section id number for a given section name
|
|
2710
|
+
"""
|
|
2711
|
+
return _medpython.PidRepository_dict_section_id(self, secName)
|
|
2712
|
+
|
|
2713
|
+
def dict_name(self, section_id, id):
|
|
2714
|
+
r"""
|
|
2715
|
+
dict_name(int_section_id, int_id) -> string
|
|
2716
|
+
returns name of section + id
|
|
2717
|
+
"""
|
|
2718
|
+
return _medpython.PidRepository_dict_name(self, section_id, id)
|
|
2719
|
+
|
|
2720
|
+
def dict_prep_sets_lookup_table(self, section_id, set_names):
|
|
2721
|
+
r"""
|
|
2722
|
+
dict_prep_sets_lookup_table(int_section_id, list_String set_names) -> BoolVector
|
|
2723
|
+
returns a look-up-table for given set names
|
|
2724
|
+
"""
|
|
2725
|
+
return _medpython.PidRepository_dict_prep_sets_lookup_table(self, section_id, set_names)
|
|
2726
|
+
|
|
2727
|
+
def get_lut_from_regex(self, section_id, regex_s):
|
|
2728
|
+
r"""
|
|
2729
|
+
get get_lut_from_regex to names -> BoolVector
|
|
2730
|
+
returns a lut - boolean vector
|
|
2731
|
+
"""
|
|
2732
|
+
return _medpython.PidRepository_get_lut_from_regex(self, section_id, regex_s)
|
|
2733
|
+
|
|
2734
|
+
def export_to_numpy(self, signame, pids_to_take, use_all_pids, translate_flag, free_sig, filter_regex_str):
|
|
2735
|
+
r"""
|
|
2736
|
+
export_to_numpy(str_signame) -> SigExporter
|
|
2737
|
+
Returns the signal data represented as a list of numpy arrays, one for each field
|
|
2738
|
+
"""
|
|
2739
|
+
return _medpython.PidRepository_export_to_numpy(self, signame, pids_to_take, use_all_pids, translate_flag, free_sig, filter_regex_str)
|
|
2740
|
+
|
|
2741
|
+
def free(self, signame):
|
|
2742
|
+
r"""
|
|
2743
|
+
free(signame) -> int
|
|
2744
|
+
Free the signal data specified by signame
|
|
2745
|
+
"""
|
|
2746
|
+
return _medpython.PidRepository_free(self, signame)
|
|
2747
|
+
|
|
2748
|
+
def switch_to_in_mem(self):
|
|
2749
|
+
r"""
|
|
2750
|
+
switch_to_in_mem()
|
|
2751
|
+
Switch to in mem repository mode
|
|
2752
|
+
"""
|
|
2753
|
+
return _medpython.PidRepository_switch_to_in_mem(self)
|
|
2754
|
+
|
|
2755
|
+
def load_from_json(self, json_file_path):
|
|
2756
|
+
r"""
|
|
2757
|
+
load_from_json(json_file_path)
|
|
2758
|
+
Loads patient data into in-mem repository. If patient exists, adds more data
|
|
2759
|
+
"""
|
|
2760
|
+
return _medpython.PidRepository_load_from_json(self, json_file_path)
|
|
2761
|
+
|
|
2762
|
+
def load_from_json_str(self, json_content):
|
|
2763
|
+
r"""
|
|
2764
|
+
load_from_json_str(json_string)
|
|
2765
|
+
Loads patient data into in-mem repository. If patient exists, adds more data
|
|
2766
|
+
"""
|
|
2767
|
+
return _medpython.PidRepository_load_from_json_str(self, json_content)
|
|
2768
|
+
|
|
2769
|
+
def clear(self):
|
|
2770
|
+
r"""
|
|
2771
|
+
load_from_json()
|
|
2772
|
+
Clear repository memory. erase in-memory patient data
|
|
2773
|
+
"""
|
|
2774
|
+
return _medpython.PidRepository_clear(self)
|
|
2775
|
+
|
|
2776
|
+
def finish_load_data(self):
|
|
2777
|
+
r"""
|
|
2778
|
+
finish_load_data()
|
|
2779
|
+
prepare for model apply. not need to call it specifically.
|
|
2780
|
+
"""
|
|
2781
|
+
return _medpython.PidRepository_finish_load_data(self)
|
|
2782
|
+
|
|
2783
|
+
def get_sig(self, sig_name_str, translate=True, pids=None, float32to64=True, free_signal=True, regex_str=None, regex_filter=None):
|
|
2784
|
+
r"""get_sig(PidRepository self, char const * sig_name_str, bool translate=True, IntVector pids=None, bool float32to64=True, bool free_signal=True, char const * regex_str=None, char const * regex_filter=None)"""
|
|
2785
|
+
return _medpython.PidRepository_get_sig(self, sig_name_str, translate, pids, float32to64, free_signal, regex_str, regex_filter)
|
|
2786
|
+
|
|
2787
|
+
pids = property(MEDPY_GET_pids,None)
|
|
2788
|
+
|
|
2789
|
+
|
|
2790
|
+
# Register PidRepository in _medpython:
|
|
2791
|
+
_medpython.PidRepository_swigregister(PidRepository)
|
|
2792
|
+
class Sig(object):
|
|
2793
|
+
r"""Proxy of C++ MPSig class."""
|
|
2794
|
+
|
|
2795
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2796
|
+
__repr__ = _swig_repr
|
|
2797
|
+
|
|
2798
|
+
def __init__(self, other):
|
|
2799
|
+
r"""__init__(Sig self, Sig other) -> Sig"""
|
|
2800
|
+
_medpython.Sig_swiginit(self, _medpython.new_Sig(other))
|
|
2801
|
+
|
|
2802
|
+
def time(self, chan=0):
|
|
2803
|
+
r"""time(Sig self, int chan=0) -> int"""
|
|
2804
|
+
return _medpython.Sig_time(self, chan)
|
|
2805
|
+
|
|
2806
|
+
def val(self, chan=0):
|
|
2807
|
+
r"""val(Sig self, int chan=0) -> float"""
|
|
2808
|
+
return _medpython.Sig_val(self, chan)
|
|
2809
|
+
|
|
2810
|
+
def timeU(self, to_time_unit):
|
|
2811
|
+
r"""timeU(Sig self, int to_time_unit) -> int"""
|
|
2812
|
+
return _medpython.Sig_timeU(self, to_time_unit)
|
|
2813
|
+
|
|
2814
|
+
def date(self, chan=0):
|
|
2815
|
+
r"""date(Sig self, int chan=0) -> int"""
|
|
2816
|
+
return _medpython.Sig_date(self, chan)
|
|
2817
|
+
|
|
2818
|
+
def years(self, chan=0):
|
|
2819
|
+
r"""years(Sig self, int chan=0) -> int"""
|
|
2820
|
+
return _medpython.Sig_years(self, chan)
|
|
2821
|
+
|
|
2822
|
+
def months(self, chan=0):
|
|
2823
|
+
r"""months(Sig self, int chan=0) -> int"""
|
|
2824
|
+
return _medpython.Sig_months(self, chan)
|
|
2825
|
+
|
|
2826
|
+
def days(self, chan=0):
|
|
2827
|
+
r"""days(Sig self, int chan=0) -> int"""
|
|
2828
|
+
return _medpython.Sig_days(self, chan)
|
|
2829
|
+
|
|
2830
|
+
def hours(self, chan=0):
|
|
2831
|
+
r"""hours(Sig self, int chan=0) -> int"""
|
|
2832
|
+
return _medpython.Sig_hours(self, chan)
|
|
2833
|
+
|
|
2834
|
+
def minutes(self, chan=0):
|
|
2835
|
+
r"""minutes(Sig self, int chan=0) -> int"""
|
|
2836
|
+
return _medpython.Sig_minutes(self, chan)
|
|
2837
|
+
__swig_destroy__ = _medpython.delete_Sig
|
|
2838
|
+
|
|
2839
|
+
# Register Sig in _medpython:
|
|
2840
|
+
_medpython.Sig_swigregister(Sig)
|
|
2841
|
+
class SigVectorAdaptor(object):
|
|
2842
|
+
r"""Proxy of C++ MPSigVectorAdaptor class."""
|
|
2843
|
+
|
|
2844
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2845
|
+
__repr__ = _swig_repr
|
|
2846
|
+
|
|
2847
|
+
def __init__(self, other):
|
|
2848
|
+
r"""__init__(SigVectorAdaptor self, SigVectorAdaptor other) -> SigVectorAdaptor"""
|
|
2849
|
+
_medpython.SigVectorAdaptor_swiginit(self, _medpython.new_SigVectorAdaptor(other))
|
|
2850
|
+
__swig_destroy__ = _medpython.delete_SigVectorAdaptor
|
|
2851
|
+
|
|
2852
|
+
def __len__(self):
|
|
2853
|
+
r"""__len__(SigVectorAdaptor self) -> int"""
|
|
2854
|
+
return _medpython.SigVectorAdaptor___len__(self)
|
|
2855
|
+
|
|
2856
|
+
def __getitem__(self, i):
|
|
2857
|
+
r"""__getitem__(SigVectorAdaptor self, int i) -> Sig"""
|
|
2858
|
+
return _medpython.SigVectorAdaptor___getitem__(self, i)
|
|
2859
|
+
|
|
2860
|
+
def MEDPY_GET_type(self):
|
|
2861
|
+
r"""MEDPY_GET_type(SigVectorAdaptor self) -> int"""
|
|
2862
|
+
return _medpython.SigVectorAdaptor_MEDPY_GET_type(self)
|
|
2863
|
+
|
|
2864
|
+
def MEDPY_GET_n_time_channels(self):
|
|
2865
|
+
r"""MEDPY_GET_n_time_channels(SigVectorAdaptor self) -> int"""
|
|
2866
|
+
return _medpython.SigVectorAdaptor_MEDPY_GET_n_time_channels(self)
|
|
2867
|
+
|
|
2868
|
+
def MEDPY_GET_n_val_channels(self):
|
|
2869
|
+
r"""MEDPY_GET_n_val_channels(SigVectorAdaptor self) -> int"""
|
|
2870
|
+
return _medpython.SigVectorAdaptor_MEDPY_GET_n_val_channels(self)
|
|
2871
|
+
|
|
2872
|
+
def MEDPY_GET_time_unit(self):
|
|
2873
|
+
r"""MEDPY_GET_time_unit(SigVectorAdaptor self) -> int"""
|
|
2874
|
+
return _medpython.SigVectorAdaptor_MEDPY_GET_time_unit(self)
|
|
2875
|
+
|
|
2876
|
+
def MEDPY_GET_size(self):
|
|
2877
|
+
r"""MEDPY_GET_size(SigVectorAdaptor self) -> int"""
|
|
2878
|
+
return _medpython.SigVectorAdaptor_MEDPY_GET_size(self)
|
|
2879
|
+
|
|
2880
|
+
type = property(MEDPY_GET_type,None)
|
|
2881
|
+
n_time_channels = property(MEDPY_GET_n_time_channels,None)
|
|
2882
|
+
n_val_channels = property(MEDPY_GET_n_val_channels,None)
|
|
2883
|
+
time_unit = property(MEDPY_GET_time_unit,None)
|
|
2884
|
+
size = property(MEDPY_GET_size,None)
|
|
2885
|
+
|
|
2886
|
+
|
|
2887
|
+
# Register SigVectorAdaptor in _medpython:
|
|
2888
|
+
_medpython.SigVectorAdaptor_swigregister(SigVectorAdaptor)
|
|
2889
|
+
class MedConvert(object):
|
|
2890
|
+
r"""Proxy of C++ MPMedConvert class."""
|
|
2891
|
+
|
|
2892
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2893
|
+
__repr__ = _swig_repr
|
|
2894
|
+
|
|
2895
|
+
def __init__(self):
|
|
2896
|
+
r"""__init__(MedConvert self) -> MedConvert"""
|
|
2897
|
+
_medpython.MedConvert_swiginit(self, _medpython.new_MedConvert())
|
|
2898
|
+
__swig_destroy__ = _medpython.delete_MedConvert
|
|
2899
|
+
|
|
2900
|
+
def init_load_params(self, load_args):
|
|
2901
|
+
r"""init_load_params(MedConvert self, std::string const & load_args)"""
|
|
2902
|
+
return _medpython.MedConvert_init_load_params(self, load_args)
|
|
2903
|
+
|
|
2904
|
+
def create_rep(self, conf_fname):
|
|
2905
|
+
r"""create_rep(MedConvert self, std::string const & conf_fname)"""
|
|
2906
|
+
return _medpython.MedConvert_create_rep(self, conf_fname)
|
|
2907
|
+
|
|
2908
|
+
def create_index(self, conf_fname):
|
|
2909
|
+
r"""create_index(MedConvert self, std::string & conf_fname) -> int"""
|
|
2910
|
+
return _medpython.MedConvert_create_index(self, conf_fname)
|
|
2911
|
+
|
|
2912
|
+
# Register MedConvert in _medpython:
|
|
2913
|
+
_medpython.MedConvert_swigregister(MedConvert)
|
|
2914
|
+
class PredictorTypes(object):
|
|
2915
|
+
r"""Proxy of C++ MPPredictorTypes class."""
|
|
2916
|
+
|
|
2917
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2918
|
+
__repr__ = _swig_repr
|
|
2919
|
+
|
|
2920
|
+
def __init__(self):
|
|
2921
|
+
r"""__init__(PredictorTypes self) -> PredictorTypes"""
|
|
2922
|
+
_medpython.PredictorTypes_swiginit(self, _medpython.new_PredictorTypes())
|
|
2923
|
+
__swig_destroy__ = _medpython.delete_PredictorTypes
|
|
2924
|
+
|
|
2925
|
+
# Register PredictorTypes in _medpython:
|
|
2926
|
+
_medpython.PredictorTypes_swigregister(PredictorTypes)
|
|
2927
|
+
PredictorTypes.LINEAR_MODEL = _medpython.cvar.PredictorTypes_LINEAR_MODEL
|
|
2928
|
+
PredictorTypes.QRF = _medpython.cvar.PredictorTypes_QRF
|
|
2929
|
+
PredictorTypes.GBM = _medpython.cvar.PredictorTypes_GBM
|
|
2930
|
+
PredictorTypes.KNN = _medpython.cvar.PredictorTypes_KNN
|
|
2931
|
+
PredictorTypes.BP = _medpython.cvar.PredictorTypes_BP
|
|
2932
|
+
PredictorTypes.MARS = _medpython.cvar.PredictorTypes_MARS
|
|
2933
|
+
PredictorTypes.GD_LINEAR = _medpython.cvar.PredictorTypes_GD_LINEAR
|
|
2934
|
+
PredictorTypes.MULTI_CLASS = _medpython.cvar.PredictorTypes_MULTI_CLASS
|
|
2935
|
+
PredictorTypes.XGB = _medpython.cvar.PredictorTypes_XGB
|
|
2936
|
+
PredictorTypes.LASSO = _medpython.cvar.PredictorTypes_LASSO
|
|
2937
|
+
PredictorTypes.MIC_NET = _medpython.cvar.PredictorTypes_MIC_NET
|
|
2938
|
+
PredictorTypes.BOOSTER = _medpython.cvar.PredictorTypes_BOOSTER
|
|
2939
|
+
PredictorTypes.DEEP_BIT = _medpython.cvar.PredictorTypes_DEEP_BIT
|
|
2940
|
+
PredictorTypes.LIGHTGBM = _medpython.cvar.PredictorTypes_LIGHTGBM
|
|
2941
|
+
PredictorTypes.SPECIFIC_GROUPS_MODELS = _medpython.cvar.PredictorTypes_SPECIFIC_GROUPS_MODELS
|
|
2942
|
+
PredictorTypes.SVM = _medpython.cvar.PredictorTypes_SVM
|
|
2943
|
+
PredictorTypes.LINEAR_SGD = _medpython.cvar.PredictorTypes_LINEAR_SGD
|
|
2944
|
+
PredictorTypes.VW = _medpython.cvar.PredictorTypes_VW
|
|
2945
|
+
PredictorTypes.TQRF = _medpython.cvar.PredictorTypes_TQRF
|
|
2946
|
+
PredictorTypes.BART = _medpython.cvar.PredictorTypes_BART
|
|
2947
|
+
|
|
2948
|
+
class Predictor(object):
|
|
2949
|
+
r"""Proxy of C++ MPPredictor class."""
|
|
2950
|
+
|
|
2951
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
2952
|
+
__repr__ = _swig_repr
|
|
2953
|
+
|
|
2954
|
+
def asSerializable(self):
|
|
2955
|
+
r"""asSerializable(Predictor self) -> SerializableObject"""
|
|
2956
|
+
return _medpython.Predictor_asSerializable(self)
|
|
2957
|
+
|
|
2958
|
+
def __init__(self, *args):
|
|
2959
|
+
r"""
|
|
2960
|
+
__init__(Predictor self) -> Predictor
|
|
2961
|
+
__init__(Predictor self, string model_type, string params="") -> Predictor
|
|
2962
|
+
"""
|
|
2963
|
+
_medpython.Predictor_swiginit(self, _medpython.new_Predictor(*args))
|
|
2964
|
+
|
|
2965
|
+
def MEDPY_GET_transpose_for_learn(self):
|
|
2966
|
+
r"""MEDPY_GET_transpose_for_learn(Predictor self) -> bool"""
|
|
2967
|
+
return _medpython.Predictor_MEDPY_GET_transpose_for_learn(self)
|
|
2968
|
+
|
|
2969
|
+
def MEDPY_SET_transpose_for_learn(self, new_val):
|
|
2970
|
+
r"""MEDPY_SET_transpose_for_learn(Predictor self, bool new_val)"""
|
|
2971
|
+
return _medpython.Predictor_MEDPY_SET_transpose_for_learn(self, new_val)
|
|
2972
|
+
|
|
2973
|
+
def MEDPY_GET_normalize_for_learn(self):
|
|
2974
|
+
r"""MEDPY_GET_normalize_for_learn(Predictor self) -> bool"""
|
|
2975
|
+
return _medpython.Predictor_MEDPY_GET_normalize_for_learn(self)
|
|
2976
|
+
|
|
2977
|
+
def MEDPY_SET_normalize_for_learn(self, new_val):
|
|
2978
|
+
r"""MEDPY_SET_normalize_for_learn(Predictor self, bool new_val)"""
|
|
2979
|
+
return _medpython.Predictor_MEDPY_SET_normalize_for_learn(self, new_val)
|
|
2980
|
+
|
|
2981
|
+
def MEDPY_GET_normalize_y_for_learn(self):
|
|
2982
|
+
r"""MEDPY_GET_normalize_y_for_learn(Predictor self) -> bool"""
|
|
2983
|
+
return _medpython.Predictor_MEDPY_GET_normalize_y_for_learn(self)
|
|
2984
|
+
|
|
2985
|
+
def MEDPY_SET_normalize_y_for_learn(self, new_val):
|
|
2986
|
+
r"""MEDPY_SET_normalize_y_for_learn(Predictor self, bool new_val)"""
|
|
2987
|
+
return _medpython.Predictor_MEDPY_SET_normalize_y_for_learn(self, new_val)
|
|
2988
|
+
|
|
2989
|
+
def MEDPY_GET_transpose_for_predict(self):
|
|
2990
|
+
r"""MEDPY_GET_transpose_for_predict(Predictor self) -> bool"""
|
|
2991
|
+
return _medpython.Predictor_MEDPY_GET_transpose_for_predict(self)
|
|
2992
|
+
|
|
2993
|
+
def MEDPY_SET_transpose_for_predict(self, new_val):
|
|
2994
|
+
r"""MEDPY_SET_transpose_for_predict(Predictor self, bool new_val)"""
|
|
2995
|
+
return _medpython.Predictor_MEDPY_SET_transpose_for_predict(self, new_val)
|
|
2996
|
+
|
|
2997
|
+
def MEDPY_GET_normalize_for_predict(self):
|
|
2998
|
+
r"""MEDPY_GET_normalize_for_predict(Predictor self) -> bool"""
|
|
2999
|
+
return _medpython.Predictor_MEDPY_GET_normalize_for_predict(self)
|
|
3000
|
+
|
|
3001
|
+
def MEDPY_SET_normalize_for_predict(self, new_val):
|
|
3002
|
+
r"""MEDPY_SET_normalize_for_predict(Predictor self, bool new_val)"""
|
|
3003
|
+
return _medpython.Predictor_MEDPY_SET_normalize_for_predict(self, new_val)
|
|
3004
|
+
|
|
3005
|
+
def MEDPY_GET_model_features(self):
|
|
3006
|
+
r"""MEDPY_GET_model_features(Predictor self) -> StringVector"""
|
|
3007
|
+
return _medpython.Predictor_MEDPY_GET_model_features(self)
|
|
3008
|
+
|
|
3009
|
+
def MEDPY_SET_model_features(self, new_val):
|
|
3010
|
+
r"""MEDPY_SET_model_features(Predictor self, StringVector new_val)"""
|
|
3011
|
+
return _medpython.Predictor_MEDPY_SET_model_features(self, new_val)
|
|
3012
|
+
|
|
3013
|
+
def MEDPY_GET_features_count(self):
|
|
3014
|
+
r"""MEDPY_GET_features_count(Predictor self) -> int"""
|
|
3015
|
+
return _medpython.Predictor_MEDPY_GET_features_count(self)
|
|
3016
|
+
|
|
3017
|
+
def MEDPY_SET_features_count(self, new_val):
|
|
3018
|
+
r"""MEDPY_SET_features_count(Predictor self, int new_val)"""
|
|
3019
|
+
return _medpython.Predictor_MEDPY_SET_features_count(self, new_val)
|
|
3020
|
+
|
|
3021
|
+
@staticmethod
|
|
3022
|
+
def make_predictor(*args):
|
|
3023
|
+
r"""
|
|
3024
|
+
make_predictor(string model_type) -> Predictor
|
|
3025
|
+
make_predictor(string model_type, string params) -> Predictor
|
|
3026
|
+
"""
|
|
3027
|
+
return _medpython.Predictor_make_predictor(*args)
|
|
3028
|
+
|
|
3029
|
+
def learn(self, features):
|
|
3030
|
+
r"""learn(Predictor self, Features features) -> int"""
|
|
3031
|
+
return _medpython.Predictor_learn(self, features)
|
|
3032
|
+
|
|
3033
|
+
def predict(self, features):
|
|
3034
|
+
r"""predict(Predictor self, Features features) -> int"""
|
|
3035
|
+
return _medpython.Predictor_predict(self, features)
|
|
3036
|
+
|
|
3037
|
+
def calc_feature_contribs(self, features, res):
|
|
3038
|
+
r"""calc_feature_contribs(Predictor self, Features features, Features res)"""
|
|
3039
|
+
return _medpython.Predictor_calc_feature_contribs(self, features, res)
|
|
3040
|
+
|
|
3041
|
+
def write_predictor_to_file(self, outFile):
|
|
3042
|
+
r"""write_predictor_to_file(Predictor self, string & outFile)"""
|
|
3043
|
+
return _medpython.Predictor_write_predictor_to_file(self, outFile)
|
|
3044
|
+
|
|
3045
|
+
def export_predictor(self, outFile):
|
|
3046
|
+
r"""export_predictor(Predictor self, string & outFile)"""
|
|
3047
|
+
return _medpython.Predictor_export_predictor(self, outFile)
|
|
3048
|
+
|
|
3049
|
+
transpose_for_learn = property(MEDPY_GET_transpose_for_learn,MEDPY_SET_transpose_for_learn)
|
|
3050
|
+
normalize_for_learn = property(MEDPY_GET_normalize_for_learn,MEDPY_SET_normalize_for_learn)
|
|
3051
|
+
normalize_y_for_learn = property(MEDPY_GET_normalize_y_for_learn,MEDPY_SET_normalize_y_for_learn)
|
|
3052
|
+
transpose_for_predict = property(MEDPY_GET_transpose_for_predict,MEDPY_SET_transpose_for_predict)
|
|
3053
|
+
normalize_for_predict = property(MEDPY_GET_normalize_for_predict,MEDPY_SET_normalize_for_predict)
|
|
3054
|
+
model_features = property(MEDPY_GET_model_features,MEDPY_SET_model_features)
|
|
3055
|
+
features_count = property(MEDPY_GET_features_count,MEDPY_SET_features_count)
|
|
3056
|
+
|
|
3057
|
+
__swig_destroy__ = _medpython.delete_Predictor
|
|
3058
|
+
|
|
3059
|
+
# Register Predictor in _medpython:
|
|
3060
|
+
_medpython.Predictor_swigregister(Predictor)
|
|
3061
|
+
class SampleFilter(object):
|
|
3062
|
+
r"""Proxy of C++ MPSampleFilter class."""
|
|
3063
|
+
|
|
3064
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3065
|
+
__repr__ = _swig_repr
|
|
3066
|
+
|
|
3067
|
+
@staticmethod
|
|
3068
|
+
def from_name(name):
|
|
3069
|
+
r"""from_name(string name) -> SampleFilter"""
|
|
3070
|
+
return _medpython.SampleFilter_from_name(name)
|
|
3071
|
+
|
|
3072
|
+
@staticmethod
|
|
3073
|
+
def from_type(type):
|
|
3074
|
+
r"""from_type(int type) -> SampleFilter"""
|
|
3075
|
+
return _medpython.SampleFilter_from_type(type)
|
|
3076
|
+
|
|
3077
|
+
@staticmethod
|
|
3078
|
+
def from_name_params(name, params):
|
|
3079
|
+
r"""from_name_params(string name, string params) -> SampleFilter"""
|
|
3080
|
+
return _medpython.SampleFilter_from_name_params(name, params)
|
|
3081
|
+
|
|
3082
|
+
@staticmethod
|
|
3083
|
+
def from_type_params(type, params):
|
|
3084
|
+
r"""from_type_params(int type, string params) -> SampleFilter"""
|
|
3085
|
+
return _medpython.SampleFilter_from_type_params(type, params)
|
|
3086
|
+
__swig_destroy__ = _medpython.delete_SampleFilter
|
|
3087
|
+
|
|
3088
|
+
def filter(self, rep, samples):
|
|
3089
|
+
r"""
|
|
3090
|
+
filter(rep, samples) -> int
|
|
3091
|
+
in-place filtering with repository. returns -1 if fails.
|
|
3092
|
+
"""
|
|
3093
|
+
return _medpython.SampleFilter_filter(self, rep, samples)
|
|
3094
|
+
|
|
3095
|
+
def asSerializable(self):
|
|
3096
|
+
r"""asSerializable(SampleFilter self) -> SerializableObject"""
|
|
3097
|
+
return _medpython.SampleFilter_asSerializable(self)
|
|
3098
|
+
|
|
3099
|
+
def __init__(self):
|
|
3100
|
+
r"""__init__(SampleFilter self) -> SampleFilter"""
|
|
3101
|
+
_medpython.SampleFilter_swiginit(self, _medpython.new_SampleFilter())
|
|
3102
|
+
|
|
3103
|
+
# Register SampleFilter in _medpython:
|
|
3104
|
+
_medpython.SampleFilter_swigregister(SampleFilter)
|
|
3105
|
+
SampleFilter.SMPL_FILTER_TRN_ = _medpython.cvar.SampleFilter_SMPL_FILTER_TRN_
|
|
3106
|
+
SampleFilter.SMPL_FILTER_TST_ = _medpython.cvar.SampleFilter_SMPL_FILTER_TST_
|
|
3107
|
+
SampleFilter.SMPL_FILTER_OUTLIERS_ = _medpython.cvar.SampleFilter_SMPL_FILTER_OUTLIERS_
|
|
3108
|
+
SampleFilter.SMPL_FILTER_MATCH_ = _medpython.cvar.SampleFilter_SMPL_FILTER_MATCH_
|
|
3109
|
+
SampleFilter.SMPL_FILTER_REQ_SIGNAL_ = _medpython.cvar.SampleFilter_SMPL_FILTER_REQ_SIGNAL_
|
|
3110
|
+
SampleFilter.SMPL_FILTER_BASIC_ = _medpython.cvar.SampleFilter_SMPL_FILTER_BASIC_
|
|
3111
|
+
SampleFilter.SMPL_FILTER_LAST_ = _medpython.cvar.SampleFilter_SMPL_FILTER_LAST_
|
|
3112
|
+
|
|
3113
|
+
class Sample(object):
|
|
3114
|
+
r"""Proxy of C++ MPSample class."""
|
|
3115
|
+
|
|
3116
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3117
|
+
__repr__ = _swig_repr
|
|
3118
|
+
|
|
3119
|
+
def MEDPY_GET_id(self):
|
|
3120
|
+
r"""MEDPY_GET_id(Sample self) -> int"""
|
|
3121
|
+
return _medpython.Sample_MEDPY_GET_id(self)
|
|
3122
|
+
|
|
3123
|
+
def MEDPY_SET_id(self, new_id):
|
|
3124
|
+
r"""MEDPY_SET_id(Sample self, int new_id)"""
|
|
3125
|
+
return _medpython.Sample_MEDPY_SET_id(self, new_id)
|
|
3126
|
+
|
|
3127
|
+
def MEDPY_GET_split(self):
|
|
3128
|
+
r"""MEDPY_GET_split(Sample self) -> int"""
|
|
3129
|
+
return _medpython.Sample_MEDPY_GET_split(self)
|
|
3130
|
+
|
|
3131
|
+
def MEDPY_SET_split(self, new_sp):
|
|
3132
|
+
r"""MEDPY_SET_split(Sample self, int new_sp)"""
|
|
3133
|
+
return _medpython.Sample_MEDPY_SET_split(self, new_sp)
|
|
3134
|
+
|
|
3135
|
+
def MEDPY_GET_time(self):
|
|
3136
|
+
r"""MEDPY_GET_time(Sample self) -> int"""
|
|
3137
|
+
return _medpython.Sample_MEDPY_GET_time(self)
|
|
3138
|
+
|
|
3139
|
+
def MEDPY_SET_time(self, new_time):
|
|
3140
|
+
r"""MEDPY_SET_time(Sample self, int new_time)"""
|
|
3141
|
+
return _medpython.Sample_MEDPY_SET_time(self, new_time)
|
|
3142
|
+
|
|
3143
|
+
def MEDPY_GET_outcome(self):
|
|
3144
|
+
r"""MEDPY_GET_outcome(Sample self) -> int"""
|
|
3145
|
+
return _medpython.Sample_MEDPY_GET_outcome(self)
|
|
3146
|
+
|
|
3147
|
+
def MEDPY_SET_outcome(self, new_outcome):
|
|
3148
|
+
r"""MEDPY_SET_outcome(Sample self, int new_outcome)"""
|
|
3149
|
+
return _medpython.Sample_MEDPY_SET_outcome(self, new_outcome)
|
|
3150
|
+
|
|
3151
|
+
def MEDPY_GET_outcomeTime(self):
|
|
3152
|
+
r"""MEDPY_GET_outcomeTime(Sample self) -> int"""
|
|
3153
|
+
return _medpython.Sample_MEDPY_GET_outcomeTime(self)
|
|
3154
|
+
|
|
3155
|
+
def MEDPY_SET_outcomeTime(self, new_outcome_time):
|
|
3156
|
+
r"""MEDPY_SET_outcomeTime(Sample self, int new_outcome_time)"""
|
|
3157
|
+
return _medpython.Sample_MEDPY_SET_outcomeTime(self, new_outcome_time)
|
|
3158
|
+
|
|
3159
|
+
def MEDPY_GET_prediction(self):
|
|
3160
|
+
r"""MEDPY_GET_prediction(Sample self)"""
|
|
3161
|
+
return _medpython.Sample_MEDPY_GET_prediction(self)
|
|
3162
|
+
|
|
3163
|
+
def MEDPY_SET_prediction(self, in_predbuf):
|
|
3164
|
+
r"""MEDPY_SET_prediction(Sample self, float * in_predbuf)"""
|
|
3165
|
+
return _medpython.Sample_MEDPY_SET_prediction(self, in_predbuf)
|
|
3166
|
+
|
|
3167
|
+
def __init__(self):
|
|
3168
|
+
r"""__init__(Sample self) -> Sample"""
|
|
3169
|
+
_medpython.Sample_swiginit(self, _medpython.new_Sample())
|
|
3170
|
+
__swig_destroy__ = _medpython.delete_Sample
|
|
3171
|
+
|
|
3172
|
+
def print_(self, *args):
|
|
3173
|
+
r"""
|
|
3174
|
+
print_(Sample self, string const prefix)
|
|
3175
|
+
print_(Sample self)
|
|
3176
|
+
"""
|
|
3177
|
+
return _medpython.Sample_print_(self, *args)
|
|
3178
|
+
|
|
3179
|
+
def parse_from_string(self, s, time_unit):
|
|
3180
|
+
r"""parse_from_string(Sample self, string & s, int time_unit) -> int"""
|
|
3181
|
+
return _medpython.Sample_parse_from_string(self, s, time_unit)
|
|
3182
|
+
|
|
3183
|
+
def write_to_string(self, s, time_unit):
|
|
3184
|
+
r"""write_to_string(Sample self, string & s, int time_unit)"""
|
|
3185
|
+
return _medpython.Sample_write_to_string(self, s, time_unit)
|
|
3186
|
+
|
|
3187
|
+
def __copy__(self):
|
|
3188
|
+
r"""__copy__(Sample self) -> Sample"""
|
|
3189
|
+
return _medpython.Sample___copy__(self)
|
|
3190
|
+
|
|
3191
|
+
def asSerializable(self):
|
|
3192
|
+
r"""asSerializable(Sample self) -> SerializableObject"""
|
|
3193
|
+
return _medpython.Sample_asSerializable(self)
|
|
3194
|
+
|
|
3195
|
+
id = property(MEDPY_GET_id,MEDPY_SET_id)
|
|
3196
|
+
split = property(MEDPY_GET_split,MEDPY_SET_split)
|
|
3197
|
+
time = property(MEDPY_GET_time,MEDPY_SET_time)
|
|
3198
|
+
outcome = property(MEDPY_GET_outcome,MEDPY_SET_outcome)
|
|
3199
|
+
outcomeTime = property(MEDPY_GET_outcomeTime,MEDPY_SET_outcomeTime)
|
|
3200
|
+
prediction = property(MEDPY_GET_prediction,MEDPY_SET_prediction)
|
|
3201
|
+
|
|
3202
|
+
|
|
3203
|
+
# Register Sample in _medpython:
|
|
3204
|
+
_medpython.Sample_swigregister(Sample)
|
|
3205
|
+
class SampleVectorAdaptor(object):
|
|
3206
|
+
r"""Proxy of C++ MPSampleVectorAdaptor class."""
|
|
3207
|
+
|
|
3208
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3209
|
+
__repr__ = _swig_repr
|
|
3210
|
+
|
|
3211
|
+
def __init__(self):
|
|
3212
|
+
r"""__init__(SampleVectorAdaptor self) -> SampleVectorAdaptor"""
|
|
3213
|
+
_medpython.SampleVectorAdaptor_swiginit(self, _medpython.new_SampleVectorAdaptor())
|
|
3214
|
+
__swig_destroy__ = _medpython.delete_SampleVectorAdaptor
|
|
3215
|
+
|
|
3216
|
+
def __len__(self):
|
|
3217
|
+
r"""__len__(SampleVectorAdaptor self) -> int"""
|
|
3218
|
+
return _medpython.SampleVectorAdaptor___len__(self)
|
|
3219
|
+
|
|
3220
|
+
def __getitem__(self, i):
|
|
3221
|
+
r"""__getitem__(SampleVectorAdaptor self, int i) -> Sample"""
|
|
3222
|
+
return _medpython.SampleVectorAdaptor___getitem__(self, i)
|
|
3223
|
+
|
|
3224
|
+
def __setitem__(self, i, val):
|
|
3225
|
+
r"""__setitem__(SampleVectorAdaptor self, int i, Sample val)"""
|
|
3226
|
+
return _medpython.SampleVectorAdaptor___setitem__(self, i, val)
|
|
3227
|
+
|
|
3228
|
+
def append(self, val):
|
|
3229
|
+
r"""append(SampleVectorAdaptor self, Sample val)"""
|
|
3230
|
+
return _medpython.SampleVectorAdaptor_append(self, val)
|
|
3231
|
+
|
|
3232
|
+
def append_vec(self, other):
|
|
3233
|
+
r"""append_vec(SampleVectorAdaptor self, SampleVectorAdaptor other)"""
|
|
3234
|
+
return _medpython.SampleVectorAdaptor_append_vec(self, other)
|
|
3235
|
+
|
|
3236
|
+
def override_splits(self, nfolds):
|
|
3237
|
+
r"""override_splits(SampleVectorAdaptor self, int nfolds)"""
|
|
3238
|
+
return _medpython.SampleVectorAdaptor_override_splits(self, nfolds)
|
|
3239
|
+
|
|
3240
|
+
def nSplits(self):
|
|
3241
|
+
r"""nSplits(SampleVectorAdaptor self) -> int"""
|
|
3242
|
+
return _medpython.SampleVectorAdaptor_nSplits(self)
|
|
3243
|
+
|
|
3244
|
+
# Register SampleVectorAdaptor in _medpython:
|
|
3245
|
+
_medpython.SampleVectorAdaptor_swigregister(SampleVectorAdaptor)
|
|
3246
|
+
class IdSamples(object):
|
|
3247
|
+
r"""Proxy of C++ MPIdSamples class."""
|
|
3248
|
+
|
|
3249
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3250
|
+
__repr__ = _swig_repr
|
|
3251
|
+
|
|
3252
|
+
def MEDPY_GET_id(self):
|
|
3253
|
+
r"""MEDPY_GET_id(IdSamples self) -> int"""
|
|
3254
|
+
return _medpython.IdSamples_MEDPY_GET_id(self)
|
|
3255
|
+
|
|
3256
|
+
def MEDPY_SET_id(self, new_id):
|
|
3257
|
+
r"""MEDPY_SET_id(IdSamples self, int new_id)"""
|
|
3258
|
+
return _medpython.IdSamples_MEDPY_SET_id(self, new_id)
|
|
3259
|
+
|
|
3260
|
+
def MEDPY_GET_split(self):
|
|
3261
|
+
r"""MEDPY_GET_split(IdSamples self) -> int"""
|
|
3262
|
+
return _medpython.IdSamples_MEDPY_GET_split(self)
|
|
3263
|
+
|
|
3264
|
+
def MEDPY_SET_split(self, new_id):
|
|
3265
|
+
r"""MEDPY_SET_split(IdSamples self, int new_id)"""
|
|
3266
|
+
return _medpython.IdSamples_MEDPY_SET_split(self, new_id)
|
|
3267
|
+
|
|
3268
|
+
def MEDPY_GET_samples(self):
|
|
3269
|
+
r"""MEDPY_GET_samples(IdSamples self) -> SampleVectorAdaptor"""
|
|
3270
|
+
return _medpython.IdSamples_MEDPY_GET_samples(self)
|
|
3271
|
+
|
|
3272
|
+
def __init__(self, *args):
|
|
3273
|
+
r"""
|
|
3274
|
+
__init__(IdSamples self, int _id) -> IdSamples
|
|
3275
|
+
__init__(IdSamples self) -> IdSamples
|
|
3276
|
+
"""
|
|
3277
|
+
_medpython.IdSamples_swiginit(self, _medpython.new_IdSamples(*args))
|
|
3278
|
+
__swig_destroy__ = _medpython.delete_IdSamples
|
|
3279
|
+
|
|
3280
|
+
def set_split(self, _split):
|
|
3281
|
+
r"""set_split(IdSamples self, int _split)"""
|
|
3282
|
+
return _medpython.IdSamples_set_split(self, _split)
|
|
3283
|
+
|
|
3284
|
+
def same_as(self, other, mode):
|
|
3285
|
+
r"""same_as(IdSamples self, IdSamples other, int mode) -> bool"""
|
|
3286
|
+
return _medpython.IdSamples_same_as(self, other, mode)
|
|
3287
|
+
|
|
3288
|
+
def asSerializable(self):
|
|
3289
|
+
r"""asSerializable(IdSamples self) -> SerializableObject"""
|
|
3290
|
+
return _medpython.IdSamples_asSerializable(self)
|
|
3291
|
+
|
|
3292
|
+
id = property(MEDPY_GET_id,MEDPY_SET_id)
|
|
3293
|
+
split = property(MEDPY_GET_split,MEDPY_SET_split)
|
|
3294
|
+
samples = property(MEDPY_GET_samples,None)
|
|
3295
|
+
|
|
3296
|
+
|
|
3297
|
+
# Register IdSamples in _medpython:
|
|
3298
|
+
_medpython.IdSamples_swigregister(IdSamples)
|
|
3299
|
+
class IdSamplesVectorAdaptor(object):
|
|
3300
|
+
r"""Proxy of C++ MPIdSamplesVectorAdaptor class."""
|
|
3301
|
+
|
|
3302
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3303
|
+
__repr__ = _swig_repr
|
|
3304
|
+
|
|
3305
|
+
def __init__(self, *args):
|
|
3306
|
+
r"""
|
|
3307
|
+
__init__(IdSamplesVectorAdaptor self) -> IdSamplesVectorAdaptor
|
|
3308
|
+
__init__(IdSamplesVectorAdaptor self, vector< MedIdSamples > * ptr) -> IdSamplesVectorAdaptor
|
|
3309
|
+
"""
|
|
3310
|
+
_medpython.IdSamplesVectorAdaptor_swiginit(self, _medpython.new_IdSamplesVectorAdaptor(*args))
|
|
3311
|
+
__swig_destroy__ = _medpython.delete_IdSamplesVectorAdaptor
|
|
3312
|
+
|
|
3313
|
+
def __len__(self):
|
|
3314
|
+
r"""__len__(IdSamplesVectorAdaptor self) -> int"""
|
|
3315
|
+
return _medpython.IdSamplesVectorAdaptor___len__(self)
|
|
3316
|
+
|
|
3317
|
+
def __getitem__(self, i):
|
|
3318
|
+
r"""__getitem__(IdSamplesVectorAdaptor self, int i) -> IdSamples"""
|
|
3319
|
+
return _medpython.IdSamplesVectorAdaptor___getitem__(self, i)
|
|
3320
|
+
|
|
3321
|
+
def __setitem__(self, i, val):
|
|
3322
|
+
r"""__setitem__(IdSamplesVectorAdaptor self, int i, IdSamples val)"""
|
|
3323
|
+
return _medpython.IdSamplesVectorAdaptor___setitem__(self, i, val)
|
|
3324
|
+
|
|
3325
|
+
def append(self, val):
|
|
3326
|
+
r"""append(IdSamplesVectorAdaptor self, IdSamples val)"""
|
|
3327
|
+
return _medpython.IdSamplesVectorAdaptor_append(self, val)
|
|
3328
|
+
|
|
3329
|
+
# Register IdSamplesVectorAdaptor in _medpython:
|
|
3330
|
+
_medpython.IdSamplesVectorAdaptor_swigregister(IdSamplesVectorAdaptor)
|
|
3331
|
+
class Samples(object):
|
|
3332
|
+
r"""Proxy of C++ MPSamples class."""
|
|
3333
|
+
|
|
3334
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3335
|
+
__repr__ = _swig_repr
|
|
3336
|
+
|
|
3337
|
+
def MEDPY_GET_time_unit(self):
|
|
3338
|
+
r"""MEDPY_GET_time_unit(Samples self) -> int"""
|
|
3339
|
+
return _medpython.Samples_MEDPY_GET_time_unit(self)
|
|
3340
|
+
|
|
3341
|
+
def MEDPY_SET_time_unit(self, new_time_unit):
|
|
3342
|
+
r"""MEDPY_SET_time_unit(Samples self, int new_time_unit)"""
|
|
3343
|
+
return _medpython.Samples_MEDPY_SET_time_unit(self, new_time_unit)
|
|
3344
|
+
|
|
3345
|
+
def MEDPY_GET_idSamples(self):
|
|
3346
|
+
r"""MEDPY_GET_idSamples(Samples self) -> IdSamplesVectorAdaptor"""
|
|
3347
|
+
return _medpython.Samples_MEDPY_GET_idSamples(self)
|
|
3348
|
+
|
|
3349
|
+
def __init__(self):
|
|
3350
|
+
r"""__init__(Samples self) -> Samples"""
|
|
3351
|
+
_medpython.Samples_swiginit(self, _medpython.new_Samples())
|
|
3352
|
+
__swig_destroy__ = _medpython.delete_Samples
|
|
3353
|
+
|
|
3354
|
+
def clear(self):
|
|
3355
|
+
r"""clear(Samples self)"""
|
|
3356
|
+
return _medpython.Samples_clear(self)
|
|
3357
|
+
|
|
3358
|
+
def insert_preds(self, featuresData):
|
|
3359
|
+
r"""insert_preds(Samples self, Features featuresData) -> int"""
|
|
3360
|
+
return _medpython.Samples_insert_preds(self, featuresData)
|
|
3361
|
+
|
|
3362
|
+
def get_ids(self):
|
|
3363
|
+
r"""get_ids(Samples self)"""
|
|
3364
|
+
return _medpython.Samples_get_ids(self)
|
|
3365
|
+
|
|
3366
|
+
def append(self, newSamples):
|
|
3367
|
+
r"""append(Samples self, Samples newSamples)"""
|
|
3368
|
+
return _medpython.Samples_append(self, newSamples)
|
|
3369
|
+
|
|
3370
|
+
def subtract(self, _dont_use):
|
|
3371
|
+
r"""subtract(Samples self, Samples _dont_use)"""
|
|
3372
|
+
return _medpython.Samples_subtract(self, _dont_use)
|
|
3373
|
+
|
|
3374
|
+
def split_train_test(self, train, test, p_test):
|
|
3375
|
+
r"""split_train_test(Samples self, Samples train, Samples test, float p_test)"""
|
|
3376
|
+
return _medpython.Samples_split_train_test(self, train, test, p_test)
|
|
3377
|
+
|
|
3378
|
+
def read_from_bin_file(self, file_name):
|
|
3379
|
+
r"""read_from_bin_file(Samples self, string const & file_name) -> int"""
|
|
3380
|
+
return _medpython.Samples_read_from_bin_file(self, file_name)
|
|
3381
|
+
|
|
3382
|
+
def write_to_bin_file(self, file_name):
|
|
3383
|
+
r"""write_to_bin_file(Samples self, string const & file_name) -> int"""
|
|
3384
|
+
return _medpython.Samples_write_to_bin_file(self, file_name)
|
|
3385
|
+
|
|
3386
|
+
def read_from_file(self, file_name):
|
|
3387
|
+
r"""read_from_file(Samples self, string const & file_name) -> int"""
|
|
3388
|
+
return _medpython.Samples_read_from_file(self, file_name)
|
|
3389
|
+
|
|
3390
|
+
def write_to_file(self, fname):
|
|
3391
|
+
r"""write_to_file(Samples self, string const & fname) -> int"""
|
|
3392
|
+
return _medpython.Samples_write_to_file(self, fname)
|
|
3393
|
+
|
|
3394
|
+
def get_preds(self):
|
|
3395
|
+
r"""get_preds(Samples self)"""
|
|
3396
|
+
return _medpython.Samples_get_preds(self)
|
|
3397
|
+
|
|
3398
|
+
def get_y(self):
|
|
3399
|
+
r"""get_y(Samples self)"""
|
|
3400
|
+
return _medpython.Samples_get_y(self)
|
|
3401
|
+
|
|
3402
|
+
def get_categs(self):
|
|
3403
|
+
r"""get_categs(Samples self)"""
|
|
3404
|
+
return _medpython.Samples_get_categs(self)
|
|
3405
|
+
|
|
3406
|
+
def filter_by_bt(self, rep_path, json_mat, bt_cohort):
|
|
3407
|
+
r"""filter_by_bt(Samples self, string const & rep_path, string const & json_mat, string const & bt_cohort)"""
|
|
3408
|
+
return _medpython.Samples_filter_by_bt(self, rep_path, json_mat, bt_cohort)
|
|
3409
|
+
|
|
3410
|
+
def export_to_sample_vec(self):
|
|
3411
|
+
r"""export_to_sample_vec(Samples self) -> SampleVectorAdaptor"""
|
|
3412
|
+
return _medpython.Samples_export_to_sample_vec(self)
|
|
3413
|
+
|
|
3414
|
+
def import_from_sample_vec(self, vec_samples, allow_split_inconsistency=False):
|
|
3415
|
+
r"""import_from_sample_vec(Samples self, SampleVectorAdaptor vec_samples, bool allow_split_inconsistency=False)"""
|
|
3416
|
+
return _medpython.Samples_import_from_sample_vec(self, vec_samples, allow_split_inconsistency)
|
|
3417
|
+
|
|
3418
|
+
def MEDPY__from_df(self, pandas_df):
|
|
3419
|
+
r"""MEDPY__from_df(Samples self, PandasAdaptor pandas_df)"""
|
|
3420
|
+
return _medpython.Samples_MEDPY__from_df(self, pandas_df)
|
|
3421
|
+
|
|
3422
|
+
def MEDPY__from_df_adaptor(self):
|
|
3423
|
+
r"""MEDPY__from_df_adaptor(Samples self) -> PandasAdaptor"""
|
|
3424
|
+
return _medpython.Samples_MEDPY__from_df_adaptor(self)
|
|
3425
|
+
|
|
3426
|
+
def MEDPY__to_df(self):
|
|
3427
|
+
r"""MEDPY__to_df(Samples self) -> PandasAdaptor"""
|
|
3428
|
+
return _medpython.Samples_MEDPY__to_df(self)
|
|
3429
|
+
|
|
3430
|
+
def sort_by_id_date(self):
|
|
3431
|
+
r"""sort_by_id_date(Samples self)"""
|
|
3432
|
+
return _medpython.Samples_sort_by_id_date(self)
|
|
3433
|
+
|
|
3434
|
+
def normalize(self):
|
|
3435
|
+
r"""normalize(Samples self)"""
|
|
3436
|
+
return _medpython.Samples_normalize(self)
|
|
3437
|
+
|
|
3438
|
+
def same_as(self, other, mode):
|
|
3439
|
+
r"""same_as(Samples self, Samples other, int mode) -> bool"""
|
|
3440
|
+
return _medpython.Samples_same_as(self, other, mode)
|
|
3441
|
+
|
|
3442
|
+
def nSamples(self):
|
|
3443
|
+
r"""nSamples(Samples self) -> int"""
|
|
3444
|
+
return _medpython.Samples_nSamples(self)
|
|
3445
|
+
|
|
3446
|
+
def nSplits(self):
|
|
3447
|
+
r"""
|
|
3448
|
+
nSplits() -> int
|
|
3449
|
+
Return number of splits, also check mismatches between idSample and internal MedSamples and set idSamples.split if missing
|
|
3450
|
+
"""
|
|
3451
|
+
return _medpython.Samples_nSplits(self)
|
|
3452
|
+
|
|
3453
|
+
def get_predictions_size(self):
|
|
3454
|
+
r"""get_predictions_size(Samples self) -> int"""
|
|
3455
|
+
return _medpython.Samples_get_predictions_size(self)
|
|
3456
|
+
|
|
3457
|
+
def get_attributes(self):
|
|
3458
|
+
r"""get_attributes(Samples self) -> StringVector"""
|
|
3459
|
+
return _medpython.Samples_get_attributes(self)
|
|
3460
|
+
|
|
3461
|
+
def get_str_attributes(self):
|
|
3462
|
+
r"""get_str_attributes(Samples self) -> StringVector"""
|
|
3463
|
+
return _medpython.Samples_get_str_attributes(self)
|
|
3464
|
+
|
|
3465
|
+
def get_str_attributes_by_name(self, attr_name):
|
|
3466
|
+
r"""get_str_attributes_by_name(Samples self, string const & attr_name) -> StringVector"""
|
|
3467
|
+
return _medpython.Samples_get_str_attributes_by_name(self, attr_name)
|
|
3468
|
+
|
|
3469
|
+
def dilute(self, prob):
|
|
3470
|
+
r"""dilute(Samples self, float prob)"""
|
|
3471
|
+
return _medpython.Samples_dilute(self, prob)
|
|
3472
|
+
|
|
3473
|
+
def insertRec(self, *args):
|
|
3474
|
+
r"""
|
|
3475
|
+
insertRec(Samples self, int pid, int time, float outcome, int outcomeTime)
|
|
3476
|
+
insertRec(Samples self, int pid, int time, float outcome, int outcomeTime, float pred)
|
|
3477
|
+
insertRec(Samples self, int pid, int time)
|
|
3478
|
+
"""
|
|
3479
|
+
return _medpython.Samples_insertRec(self, *args)
|
|
3480
|
+
|
|
3481
|
+
def version(self):
|
|
3482
|
+
r"""version(Samples self) -> int"""
|
|
3483
|
+
return _medpython.Samples_version(self)
|
|
3484
|
+
|
|
3485
|
+
def asSerializable(self):
|
|
3486
|
+
r"""asSerializable(Samples self) -> SerializableObject"""
|
|
3487
|
+
return _medpython.Samples_asSerializable(self)
|
|
3488
|
+
|
|
3489
|
+
def override_splits(self, nfolds):
|
|
3490
|
+
r"""override_splits(Samples self, int nfolds)"""
|
|
3491
|
+
return _medpython.Samples_override_splits(self, nfolds)
|
|
3492
|
+
|
|
3493
|
+
def set_samples(self, patients, _time=-1):
|
|
3494
|
+
r"""set_samples(Samples self, int * patients, int _time=-1)"""
|
|
3495
|
+
return _medpython.Samples_set_samples(self, patients, _time)
|
|
3496
|
+
|
|
3497
|
+
time_unit = property(MEDPY_GET_time_unit,MEDPY_SET_time_unit)
|
|
3498
|
+
idSamples = property(MEDPY_GET_idSamples,None)
|
|
3499
|
+
|
|
3500
|
+
|
|
3501
|
+
# Register Samples in _medpython:
|
|
3502
|
+
_medpython.Samples_swigregister(Samples)
|
|
3503
|
+
class SerializableObject(object):
|
|
3504
|
+
r"""Proxy of C++ MPSerializableObject class."""
|
|
3505
|
+
|
|
3506
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3507
|
+
__repr__ = _swig_repr
|
|
3508
|
+
|
|
3509
|
+
def __init__(self):
|
|
3510
|
+
r"""__init__(SerializableObject self) -> SerializableObject"""
|
|
3511
|
+
_medpython.SerializableObject_swiginit(self, _medpython.new_SerializableObject())
|
|
3512
|
+
__swig_destroy__ = _medpython.delete_SerializableObject
|
|
3513
|
+
|
|
3514
|
+
def version(self):
|
|
3515
|
+
r"""version(SerializableObject self) -> int"""
|
|
3516
|
+
return _medpython.SerializableObject_version(self)
|
|
3517
|
+
|
|
3518
|
+
def my_class_name(self):
|
|
3519
|
+
r"""my_class_name(SerializableObject self) -> string"""
|
|
3520
|
+
return _medpython.SerializableObject_my_class_name(self)
|
|
3521
|
+
|
|
3522
|
+
def get_size(self):
|
|
3523
|
+
r"""
|
|
3524
|
+
get_size() -> int
|
|
3525
|
+
Gets bytes sizes for serializations
|
|
3526
|
+
"""
|
|
3527
|
+
return _medpython.SerializableObject_get_size(self)
|
|
3528
|
+
|
|
3529
|
+
def read_from_file(self, fname):
|
|
3530
|
+
r"""
|
|
3531
|
+
read_from_file(fname) -> int
|
|
3532
|
+
read and deserialize object
|
|
3533
|
+
"""
|
|
3534
|
+
return _medpython.SerializableObject_read_from_file(self, fname)
|
|
3535
|
+
|
|
3536
|
+
def write_to_file(self, fname):
|
|
3537
|
+
r"""
|
|
3538
|
+
write_to_file(fname) -> int
|
|
3539
|
+
serialize object and write to file
|
|
3540
|
+
"""
|
|
3541
|
+
return _medpython.SerializableObject_write_to_file(self, fname)
|
|
3542
|
+
|
|
3543
|
+
def read_from_file_unsafe(self, fname):
|
|
3544
|
+
r"""
|
|
3545
|
+
read_from_file_unsafe(fname) -> int
|
|
3546
|
+
read and deserialize model without checking version number - unsafe read
|
|
3547
|
+
"""
|
|
3548
|
+
return _medpython.SerializableObject_read_from_file_unsafe(self, fname)
|
|
3549
|
+
|
|
3550
|
+
# Register SerializableObject in _medpython:
|
|
3551
|
+
_medpython.SerializableObject_swigregister(SerializableObject)
|
|
3552
|
+
class SigExporter(object):
|
|
3553
|
+
r"""Proxy of C++ MPSigExporter class."""
|
|
3554
|
+
|
|
3555
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3556
|
+
__repr__ = _swig_repr
|
|
3557
|
+
|
|
3558
|
+
def keys(self):
|
|
3559
|
+
r"""keys(SigExporter self) -> StringVector"""
|
|
3560
|
+
return _medpython.SigExporter_keys(self)
|
|
3561
|
+
sig_name = property(_medpython.SigExporter_sig_name_get, _medpython.SigExporter_sig_name_set, doc=r"""sig_name : std::string""")
|
|
3562
|
+
sig_id = property(_medpython.SigExporter_sig_id_get, _medpython.SigExporter_sig_id_set, doc=r"""sig_id : int""")
|
|
3563
|
+
sig_type = property(_medpython.SigExporter_sig_type_get, _medpython.SigExporter_sig_type_set, doc=r"""sig_type : int""")
|
|
3564
|
+
record_count = property(_medpython.SigExporter_record_count_get, _medpython.SigExporter_record_count_set, doc=r"""record_count : size_t""")
|
|
3565
|
+
record_count_updated = property(_medpython.SigExporter_record_count_updated_get, _medpython.SigExporter_record_count_updated_set, doc=r"""record_count_updated : bool""")
|
|
3566
|
+
|
|
3567
|
+
def __init__(self, rep, signame_str, pids_to_take, use_all_pids, translate_flag, free_sig_flag, filter_regex_str):
|
|
3568
|
+
r"""__init__(SigExporter self, PidRepository rep, std::string signame_str, int * pids_to_take, int use_all_pids, int translate_flag, int free_sig_flag, std::string filter_regex_str) -> SigExporter"""
|
|
3569
|
+
_medpython.SigExporter_swiginit(self, _medpython.new_SigExporter(rep, signame_str, pids_to_take, use_all_pids, translate_flag, free_sig_flag, filter_regex_str))
|
|
3570
|
+
|
|
3571
|
+
def update_record_count(self):
|
|
3572
|
+
r"""update_record_count(SigExporter self)"""
|
|
3573
|
+
return _medpython.SigExporter_update_record_count(self)
|
|
3574
|
+
|
|
3575
|
+
def get_all_data(self):
|
|
3576
|
+
r"""get_all_data(SigExporter self)"""
|
|
3577
|
+
return _medpython.SigExporter_get_all_data(self)
|
|
3578
|
+
|
|
3579
|
+
def clear(self):
|
|
3580
|
+
r"""clear(SigExporter self)"""
|
|
3581
|
+
return _medpython.SigExporter_clear(self)
|
|
3582
|
+
|
|
3583
|
+
def transfer_column(self, key):
|
|
3584
|
+
r"""transfer_column(SigExporter self, std::string const & key)"""
|
|
3585
|
+
return _medpython.SigExporter_transfer_column(self, key)
|
|
3586
|
+
|
|
3587
|
+
def __getitem__(self, key):
|
|
3588
|
+
r"""__getitem__(SigExporter self, std::string const & key)"""
|
|
3589
|
+
return _medpython.SigExporter___getitem__(self, key)
|
|
3590
|
+
|
|
3591
|
+
def __iter__(self):
|
|
3592
|
+
r"""__iter__(SigExporter self) -> MPSigExporter_iter"""
|
|
3593
|
+
return _medpython.SigExporter___iter__(self)
|
|
3594
|
+
|
|
3595
|
+
def get_categorical_field_dict(self, field):
|
|
3596
|
+
r"""get_categorical_field_dict(SigExporter self, std::string const & field) -> StringVector"""
|
|
3597
|
+
return _medpython.SigExporter_get_categorical_field_dict(self, field)
|
|
3598
|
+
|
|
3599
|
+
def get_categorical_field_dict_int(self, field):
|
|
3600
|
+
r"""get_categorical_field_dict_int(SigExporter self, std::string const & field) -> IntVector"""
|
|
3601
|
+
return _medpython.SigExporter_get_categorical_field_dict_int(self, field)
|
|
3602
|
+
|
|
3603
|
+
def get_categorical_fields(self):
|
|
3604
|
+
r"""get_categorical_fields(SigExporter self) -> StringVector"""
|
|
3605
|
+
return _medpython.SigExporter_get_categorical_fields(self)
|
|
3606
|
+
__swig_destroy__ = _medpython.delete_SigExporter
|
|
3607
|
+
|
|
3608
|
+
# Register SigExporter in _medpython:
|
|
3609
|
+
_medpython.SigExporter_swigregister(SigExporter)
|
|
3610
|
+
class MPSigExporter_iter(object):
|
|
3611
|
+
r"""Proxy of C++ MPSigExporter_iter class."""
|
|
3612
|
+
|
|
3613
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3614
|
+
|
|
3615
|
+
def __init__(self, *args):
|
|
3616
|
+
r"""
|
|
3617
|
+
__init__(MPSigExporter_iter self, SigExporter o, StringVector keys_param) -> MPSigExporter_iter
|
|
3618
|
+
__init__(MPSigExporter_iter self, MPSigExporter_iter orig) -> MPSigExporter_iter
|
|
3619
|
+
"""
|
|
3620
|
+
_medpython.MPSigExporter_iter_swiginit(self, _medpython.new_MPSigExporter_iter(*args))
|
|
3621
|
+
|
|
3622
|
+
def __next__(self):
|
|
3623
|
+
r"""__next__(MPSigExporter_iter self) -> std::string"""
|
|
3624
|
+
return _medpython.MPSigExporter_iter___next__(self)
|
|
3625
|
+
|
|
3626
|
+
def __repr__(self):
|
|
3627
|
+
r"""__repr__(MPSigExporter_iter self) -> std::string"""
|
|
3628
|
+
return _medpython.MPSigExporter_iter___repr__(self)
|
|
3629
|
+
__swig_destroy__ = _medpython.delete_MPSigExporter_iter
|
|
3630
|
+
|
|
3631
|
+
# Register MPSigExporter_iter in _medpython:
|
|
3632
|
+
_medpython.MPSigExporter_iter_swigregister(MPSigExporter_iter)
|
|
3633
|
+
class Split(object):
|
|
3634
|
+
r"""Proxy of C++ MPSplit class."""
|
|
3635
|
+
|
|
3636
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3637
|
+
__repr__ = _swig_repr
|
|
3638
|
+
|
|
3639
|
+
def __init__(self):
|
|
3640
|
+
r"""__init__(Split self) -> Split"""
|
|
3641
|
+
_medpython.Split_swiginit(self, _medpython.new_Split())
|
|
3642
|
+
__swig_destroy__ = _medpython.delete_Split
|
|
3643
|
+
|
|
3644
|
+
def MEDPY_GET_nsplits(self):
|
|
3645
|
+
r"""MEDPY_GET_nsplits(Split self) -> int"""
|
|
3646
|
+
return _medpython.Split_MEDPY_GET_nsplits(self)
|
|
3647
|
+
|
|
3648
|
+
def MEDPY_GET_pid2split(self):
|
|
3649
|
+
r"""MEDPY_GET_pid2split(Split self) -> IntIntMapAdaptor"""
|
|
3650
|
+
return _medpython.Split_MEDPY_GET_pid2split(self)
|
|
3651
|
+
|
|
3652
|
+
def clear(self):
|
|
3653
|
+
r"""clear(Split self)"""
|
|
3654
|
+
return _medpython.Split_clear(self)
|
|
3655
|
+
|
|
3656
|
+
def read_from_file(self, fname):
|
|
3657
|
+
r"""read_from_file(Split self, string const & fname) -> int"""
|
|
3658
|
+
return _medpython.Split_read_from_file(self, fname)
|
|
3659
|
+
|
|
3660
|
+
def write_to_file(self, fname):
|
|
3661
|
+
r"""write_to_file(Split self, string const & fname) -> int"""
|
|
3662
|
+
return _medpython.Split_write_to_file(self, fname)
|
|
3663
|
+
|
|
3664
|
+
nsplits = property(MEDPY_GET_nsplits,None)
|
|
3665
|
+
pid2split = property(MEDPY_GET_pid2split,None)
|
|
3666
|
+
|
|
3667
|
+
|
|
3668
|
+
# Register Split in _medpython:
|
|
3669
|
+
_medpython.Split_swigregister(Split)
|
|
3670
|
+
class Time(object):
|
|
3671
|
+
r"""Proxy of C++ MPTime class."""
|
|
3672
|
+
|
|
3673
|
+
thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
|
|
3674
|
+
__repr__ = _swig_repr
|
|
3675
|
+
|
|
3676
|
+
def __init__(self):
|
|
3677
|
+
r"""__init__(Time self) -> Time"""
|
|
3678
|
+
_medpython.Time_swiginit(self, _medpython.new_Time())
|
|
3679
|
+
__swig_destroy__ = _medpython.delete_Time
|
|
3680
|
+
|
|
3681
|
+
# Register Time in _medpython:
|
|
3682
|
+
_medpython.Time_swigregister(Time)
|
|
3683
|
+
Time.Undefined = _medpython.cvar.Time_Undefined
|
|
3684
|
+
Time.Date = _medpython.cvar.Time_Date
|
|
3685
|
+
Time.Years = _medpython.cvar.Time_Years
|
|
3686
|
+
Time.Months = _medpython.cvar.Time_Months
|
|
3687
|
+
Time.Days = _medpython.cvar.Time_Days
|
|
3688
|
+
Time.Hours = _medpython.cvar.Time_Hours
|
|
3689
|
+
Time.Minutes = _medpython.cvar.Time_Minutes
|
|
3690
|
+
Time.DateTimeString = _medpython.cvar.Time_DateTimeString
|
|
3691
|
+
|
|
3692
|
+
|
|
3693
|
+
def get_public_objects():
|
|
3694
|
+
r"""get_public_objects() -> StringVector"""
|
|
3695
|
+
return _medpython.get_public_objects()
|
|
3696
|
+
|
|
3697
|
+
|
|
3698
|
+
__all__ = list(_medpython.get_public_objects())
|
|
3699
|
+
|
|
3700
|
+
"""
|
|
3701
|
+
Enable stderr capturing under ipynb
|
|
3702
|
+
"""
|
|
3703
|
+
class _stderr_fix:
|
|
3704
|
+
STDERR_FD = 2
|
|
3705
|
+
prevfd = None
|
|
3706
|
+
tmp = None
|
|
3707
|
+
reader = None
|
|
3708
|
+
is_in_ipynb = None
|
|
3709
|
+
|
|
3710
|
+
def in_ipynb(self):
|
|
3711
|
+
try:
|
|
3712
|
+
if str(type(get_ipython())) == "<class 'ipykernel.zmqshell.ZMQInteractiveShell'>":
|
|
3713
|
+
return True
|
|
3714
|
+
else:
|
|
3715
|
+
return False
|
|
3716
|
+
except NameError:
|
|
3717
|
+
return False
|
|
3718
|
+
|
|
3719
|
+
def __init__(self):
|
|
3720
|
+
from os import dup,dup2
|
|
3721
|
+
from tempfile import NamedTemporaryFile
|
|
3722
|
+
self.is_in_ipynb = self.in_ipynb()
|
|
3723
|
+
if self.is_in_ipynb:
|
|
3724
|
+
self.tmp = NamedTemporaryFile()
|
|
3725
|
+
self.prevfd = dup(self.STDERR_FD)
|
|
3726
|
+
dup2(self.tmp.fileno(), self.STDERR_FD)
|
|
3727
|
+
self.reader = open(self.tmp.name)
|
|
3728
|
+
|
|
3729
|
+
def __del__(self):
|
|
3730
|
+
if self.is_in_ipynb:
|
|
3731
|
+
from os import dup2
|
|
3732
|
+
dup2(self.prevfd, self.STDERR_FD)
|
|
3733
|
+
|
|
3734
|
+
def get_cerr(self):
|
|
3735
|
+
if self.is_in_ipynb:
|
|
3736
|
+
return self.reader.read()
|
|
3737
|
+
return ''
|
|
3738
|
+
|
|
3739
|
+
|
|
3740
|
+
_stderr_fix_instance = _stderr_fix()
|
|
3741
|
+
|
|
3742
|
+
|
|
3743
|
+
def cerr():
|
|
3744
|
+
return _stderr_fix_instance.get_cerr()
|
|
3745
|
+
|
|
3746
|
+
|
|
3747
|
+
"""
|
|
3748
|
+
Enable iterators on vector and map adaptor objects
|
|
3749
|
+
"""
|
|
3750
|
+
|
|
3751
|
+
|
|
3752
|
+
class MapAdaptorKeyIter:
|
|
3753
|
+
def __init__(self,o):
|
|
3754
|
+
self.obj = o.keys()
|
|
3755
|
+
self.i = 0
|
|
3756
|
+
self.prev_i = None
|
|
3757
|
+
self.max_i = len(self.obj)
|
|
3758
|
+
def __next__(self):
|
|
3759
|
+
if self.i >= self.max_i:
|
|
3760
|
+
raise StopIteration
|
|
3761
|
+
else:
|
|
3762
|
+
self.prev_i, self.i = self.i, self.i+1
|
|
3763
|
+
return self.obj[self.prev_i]
|
|
3764
|
+
def next(self):
|
|
3765
|
+
return self.__next__()
|
|
3766
|
+
|
|
3767
|
+
|
|
3768
|
+
class IntIndexIter:
|
|
3769
|
+
def __init__(self,o):
|
|
3770
|
+
self.obj = o
|
|
3771
|
+
self.i = 0
|
|
3772
|
+
self.prev_i = None
|
|
3773
|
+
self.max_i = len(o)
|
|
3774
|
+
def __next__(self):
|
|
3775
|
+
if self.i >= self.max_i:
|
|
3776
|
+
raise StopIteration
|
|
3777
|
+
else:
|
|
3778
|
+
self.prev_i, self.i = self.i, self.i+1
|
|
3779
|
+
return self.obj[self.prev_i]
|
|
3780
|
+
def next(self):
|
|
3781
|
+
return self.__next__()
|
|
3782
|
+
|
|
3783
|
+
def __to_df_imp(self):
|
|
3784
|
+
import pandas as pd
|
|
3785
|
+
return pd.DataFrame.from_dict(dict(self.MEDPY__to_df()))
|
|
3786
|
+
|
|
3787
|
+
def __from_df_imp(self, df):
|
|
3788
|
+
import re
|
|
3789
|
+
adaptor = self.MEDPY__from_df_adaptor()
|
|
3790
|
+
type_requirements = dict(adaptor.type_requirements)
|
|
3791
|
+
for col_name in df.columns:
|
|
3792
|
+
for col_req_name in type_requirements:
|
|
3793
|
+
if re.match('^'+col_req_name+'$',col_name):
|
|
3794
|
+
if str(df[col_name].dtype) != type_requirements[col_req_name]:
|
|
3795
|
+
df[col_name] = df[col_name].astype(type_requirements[col_req_name],copy=False)
|
|
3796
|
+
adaptor.import_column(col_name ,df[col_name].values)
|
|
3797
|
+
self.MEDPY__from_df(adaptor)
|
|
3798
|
+
|
|
3799
|
+
|
|
3800
|
+
def ___fix_vecmap_iter():
|
|
3801
|
+
from inspect import isclass
|
|
3802
|
+
glob = globals()
|
|
3803
|
+
for i in glob:
|
|
3804
|
+
o = glob[i]
|
|
3805
|
+
try:
|
|
3806
|
+
if (isclass(o) and '__len__' in dir(o) and '__getitem__' in dir(o) and not '__iter__' in dir(o)
|
|
3807
|
+
and i.endswith('VectorAdaptor')) :
|
|
3808
|
+
setattr(o, '__iter__', lambda x: IntIndexIter(x))
|
|
3809
|
+
elif (isclass(o) and '__getitem__' in dir(o) and 'keys' in dir(o) and not '__iter__' in dir(o)
|
|
3810
|
+
and i.endswith('MapAdaptor')) :
|
|
3811
|
+
setattr(o, '__iter__', lambda x: MapAdaptorKeyIter(x))
|
|
3812
|
+
if (isclass(o) and 'MEDPY__from_df' in dir(o) and 'MEDPY__from_df_adaptor' in dir(o)):
|
|
3813
|
+
setattr(o, 'from_df', __from_df_imp)
|
|
3814
|
+
if (isclass(o) and 'MEDPY__to_df' in dir(o)):
|
|
3815
|
+
setattr(o, 'to_df', __to_df_imp)
|
|
3816
|
+
except: pass
|
|
3817
|
+
|
|
3818
|
+
___fix_vecmap_iter()
|
|
3819
|
+
|
|
3820
|
+
|
|
3821
|
+
|
|
3822
|
+
"""
|
|
3823
|
+
External Methods in addition to api
|
|
3824
|
+
"""
|
|
3825
|
+
def __export_to_pandas(self, sig_name_str:str, translate:bool=True, pids:list[int]|str|None=None, float32to64:bool=True, free_signal:bool=True, regex_str:str|None = None, regex_filter:str = '') -> 'pd.DataFrame':
|
|
3826
|
+
"""get_sig(signame [, translate=True][, pids=None, float32to64=True][,regex_str = None]) -> Pandas DataFrame
|
|
3827
|
+
translate : If True, will decode categorical fields into a readable representation in Pandas
|
|
3828
|
+
pid : If list is provided, will load only pids from the given list
|
|
3829
|
+
If 'All' is provided, will use all available pids
|
|
3830
|
+
float32to64 : If True, will convert all float32 columns to float64
|
|
3831
|
+
free_signal : If True, will free signal memory as soon as it is loaded into export arrays
|
|
3832
|
+
regex_str : string (if string, defualt column is 'val') or dictionary between column name (e.g, 'val') to regex string to filter
|
|
3833
|
+
regex_filter : string to filter categories paretns this match regex
|
|
3834
|
+
"""
|
|
3835
|
+
import pandas as pd
|
|
3836
|
+
import numpy as np
|
|
3837
|
+
use_all_pids = 0
|
|
3838
|
+
if isinstance(pids, str) and pids.upper()=='ALL':
|
|
3839
|
+
use_all_pids = 1
|
|
3840
|
+
pids=list()
|
|
3841
|
+
if pids is None: pids=list()
|
|
3842
|
+
df = self.export_to_numpy(sig_name_str, pids, use_all_pids, int(translate), int(free_signal), regex_filter)
|
|
3843
|
+
|
|
3844
|
+
|
|
3845
|
+
cat_dict = dict()
|
|
3846
|
+
cat_dict_int = dict()
|
|
3847
|
+
if translate:
|
|
3848
|
+
for fld in df.get_categorical_fields():
|
|
3849
|
+
cat_dict[fld] = df.get_categorical_field_dict(fld)
|
|
3850
|
+
cat_dict_int[fld] = df.get_categorical_field_dict_int(fld)
|
|
3851
|
+
df = dict(df)
|
|
3852
|
+
df = pd.DataFrame.from_dict(df)
|
|
3853
|
+
|
|
3854
|
+
if not (regex_str is None):
|
|
3855
|
+
dict_id = self.dict_section_id(sig_name_str)
|
|
3856
|
+
if (dict_id == 0):
|
|
3857
|
+
print("Invalid sig name - skip filter")
|
|
3858
|
+
else:
|
|
3859
|
+
if not(type(regex_str) == dict):
|
|
3860
|
+
regex_str = {'val' : regex_str}
|
|
3861
|
+
|
|
3862
|
+
for fld in regex_str:
|
|
3863
|
+
lut = self.get_lut_from_regex(dict_id, regex_str[fld])
|
|
3864
|
+
lut_np = np.array(lut)
|
|
3865
|
+
if translate:
|
|
3866
|
+
lut_np = lut_np[np.array(cat_dict_int[fld])]
|
|
3867
|
+
tt = df[fld].astype(int).values
|
|
3868
|
+
df = df[lut_np[tt - 1]].reset_index(drop=True) # values start from 1
|
|
3869
|
+
if float32to64:
|
|
3870
|
+
for column_name in df:
|
|
3871
|
+
if df[column_name].dtype == np.float32:
|
|
3872
|
+
df[column_name] = df[column_name].astype(np.float64)
|
|
3873
|
+
if not translate:
|
|
3874
|
+
return df
|
|
3875
|
+
for fld in cat_dict:
|
|
3876
|
+
df[fld] = pd.Categorical.from_codes(codes=df[fld],categories=cat_dict[fld])
|
|
3877
|
+
return df
|
|
3878
|
+
|
|
3879
|
+
def __features__to_df_imp(self):
|
|
3880
|
+
import pandas as pd
|
|
3881
|
+
featMatFull = Mat()
|
|
3882
|
+
self.get_as_matrix(featMatFull)
|
|
3883
|
+
featMatFullNew = featMatFull.get_numpy_view_unsafe()
|
|
3884
|
+
col_names = self.get_feature_names()
|
|
3885
|
+
dfFeatures2 = pd.DataFrame(data = featMatFullNew, columns = col_names )
|
|
3886
|
+
|
|
3887
|
+
samps = Samples()
|
|
3888
|
+
self.get_samples(samps)
|
|
3889
|
+
samps_df = samps.to_df()
|
|
3890
|
+
out = pd.concat([samps_df,dfFeatures2], axis=1, copy=False)
|
|
3891
|
+
return out
|
|
3892
|
+
|
|
3893
|
+
def __features__from_df_imp(self, features_df):
|
|
3894
|
+
# Dataframe to MedFeatures:
|
|
3895
|
+
|
|
3896
|
+
mat = Mat()
|
|
3897
|
+
samples = Samples()
|
|
3898
|
+
ind_sampes = features_df.columns.str.contains('pred_\\d+') | features_df.columns.isin(['id', 'split', 'time', 'outcome', 'outcomeTime'])
|
|
3899
|
+
featuresNames = features_df.columns[~(ind_sampes)]
|
|
3900
|
+
# Build data matrix
|
|
3901
|
+
mat.set_signals(StringVector(list(featuresNames)))
|
|
3902
|
+
mat.load_numpy(features_df.loc[:,features_df.columns[~(ind_sampes)]].values)
|
|
3903
|
+
self.set_as_matrix(mat)
|
|
3904
|
+
# append Samples
|
|
3905
|
+
samples.from_df(features_df.loc[:,features_df.columns[ind_sampes]])
|
|
3906
|
+
self.append_samples(samples)
|
|
3907
|
+
|
|
3908
|
+
def __bootstrapResult_to_df(self):
|
|
3909
|
+
import pandas as pd
|
|
3910
|
+
dict_obj={'Cohort' : [], 'Measurement': [], 'Value': []}
|
|
3911
|
+
for cohort in self.keys():
|
|
3912
|
+
cohort_res=self[cohort]
|
|
3913
|
+
for measure in cohort_res.keys():
|
|
3914
|
+
dict_obj['Cohort'].append(cohort)
|
|
3915
|
+
dict_obj['Measurement'].append(measure)
|
|
3916
|
+
dict_obj['Value'].append(cohort_res[measure])
|
|
3917
|
+
df=pd.DataFrame(dict_obj)
|
|
3918
|
+
return df
|
|
3919
|
+
|
|
3920
|
+
def convert_to_bootstrap_input(x, arg_name=None):
|
|
3921
|
+
import pandas as pd
|
|
3922
|
+
import numpy as np
|
|
3923
|
+
if type(x) is list:
|
|
3924
|
+
x=np.array(x)
|
|
3925
|
+
if type(x) is np.ndarray:
|
|
3926
|
+
x=x.astype(float)
|
|
3927
|
+
if type(x) is pd.Series:
|
|
3928
|
+
x=x.astype(float).to_numpy()
|
|
3929
|
+
if np.isnan(x).sum()>0:
|
|
3930
|
+
if arg_name is None:
|
|
3931
|
+
raise NameError('Error - input array has nan inside')
|
|
3932
|
+
else:
|
|
3933
|
+
raise NameError('Error - input array %s has nan inside'%(arg_name))
|
|
3934
|
+
return x
|
|
3935
|
+
|
|
3936
|
+
def __bootstrap_wrapper(self, preds, labels):
|
|
3937
|
+
import pandas as pd
|
|
3938
|
+
import numpy as np
|
|
3939
|
+
preds=convert_to_bootstrap_input(preds, 'preds')
|
|
3940
|
+
labels=convert_to_bootstrap_input(labels, 'labels')
|
|
3941
|
+
res = self._bootstrap(preds, labels)
|
|
3942
|
+
return res
|
|
3943
|
+
|
|
3944
|
+
def __bootstrap_pid_wrapper(self, pids, preds, labels):
|
|
3945
|
+
import pandas as pd
|
|
3946
|
+
import numpy as np
|
|
3947
|
+
pids=convert_to_bootstrap_input(pids, 'pids')
|
|
3948
|
+
preds=convert_to_bootstrap_input(preds, 'preds')
|
|
3949
|
+
labels=convert_to_bootstrap_input(labels, 'labels')
|
|
3950
|
+
res = self._bootstrap_pid(pids, preds, labels)
|
|
3951
|
+
return res
|
|
3952
|
+
|
|
3953
|
+
def __btsimple_to_df(self):
|
|
3954
|
+
import pandas as pd
|
|
3955
|
+
dict_obj={'Measurement': [], 'Value': []}
|
|
3956
|
+
for measure in self.keys():
|
|
3957
|
+
dict_obj['Measurement'].append(measure)
|
|
3958
|
+
dict_obj['Value'].append(self[measure])
|
|
3959
|
+
df=pd.DataFrame(dict_obj)
|
|
3960
|
+
return df
|
|
3961
|
+
|
|
3962
|
+
def __get_model_weights(self) -> str:
|
|
3963
|
+
"""
|
|
3964
|
+
Returns the model as json
|
|
3965
|
+
"""
|
|
3966
|
+
import re
|
|
3967
|
+
js_model_outputs = self.get_model_weights_info()
|
|
3968
|
+
reg_unquoted = re.compile(r'(?<=[:\[,])\s*(?![{\["\'\d])([A-Za-z]+::[0-9]+)(?=\s*[,}\]])')
|
|
3969
|
+
fixed_text = reg_unquoted.sub(r'"\1"', js_model_outputs)
|
|
3970
|
+
return fixed_text
|
|
3971
|
+
|
|
3972
|
+
def __bind_external_methods():
|
|
3973
|
+
setattr(globals()['PidRepository'],'get_sig', __export_to_pandas)
|
|
3974
|
+
setattr(globals()['Features'],'to_df', __features__to_df_imp)
|
|
3975
|
+
setattr(globals()['Features'],'from_df', __features__from_df_imp)
|
|
3976
|
+
setattr(globals()['StringBtResultMap'],'to_df', __bootstrapResult_to_df)
|
|
3977
|
+
setattr(globals()['StringFloatMapAdaptor'],'to_df', __btsimple_to_df)
|
|
3978
|
+
setattr(globals()['Bootstrap'],'bootstrap', __bootstrap_wrapper)
|
|
3979
|
+
setattr(globals()['Bootstrap'],'bootstrap_pid', __bootstrap_pid_wrapper)
|
|
3980
|
+
setattr(globals()['Model'],'get_model_arch_json', __get_model_weights)
|
|
3981
|
+
|
|
3982
|
+
__bind_external_methods()
|
|
3983
|
+
|
|
3984
|
+
"""
|
|
3985
|
+
Remove SWIG's global variable access which makes issues for reflection actions
|
|
3986
|
+
#if 'cvar' in __dict__: del cvar
|
|
3987
|
+
"""
|
|
3988
|
+
try:
|
|
3989
|
+
del cvar
|
|
3990
|
+
except: pass
|
|
3991
|
+
|
|
3992
|
+
Global = GlobalClass()
|
|
3993
|
+
|
|
3994
|
+
|
|
3995
|
+
|