medicafe 0.240809.0__py3-none-any.whl → 0.241015.0__py3-none-any.whl

MediBot/MediBot_Preprocessor.py

@@ -1,9 +1,6 @@
-import os
-import re
+#MediBot_Preprocessor.py
+import os, re, sys, argparse
 from collections import OrderedDict # so that the field_mapping stays in order.
-import re
-import sys
-import argparse
 import MediBot_Crosswalk_Library
 
 # Add parent directory of the project to the Python path
@@ -20,6 +17,12 @@ try:
 except ImportError:
     from MediBot import MediBot_Preprocessor_lib
 
+try:
+    from MediLink.MediLink_API_v3 import APIClient
+except ImportError as e:
+    raise ImportError("Failed to import APIClient from MediLink.MediLink_API_v3. "
+                        "Ensure the MediLink_API_v3 module is installed and accessible.") from e
+
 # Load configuration
 # Should this also take args? Path for ./MediLink needed to be added for this to resolve
 config, crosswalk = MediLink_ConfigLoader.load_configuration()
@@ -69,17 +72,18 @@ def preprocess_csv_data(csv_data, crosswalk):
         # Update the "Ins1 Insurance ID" column based on the crosswalk and the "Ins1 Payer ID" column for each row.
         # If the Payer ID is not found in the crosswalk, create a placeholder entry in the crosswalk and mark the row for review.
         MediLink_ConfigLoader.log("CSV Pre-processor: Populating 'Ins1 Insurance ID' based on Crosswalk...", level="INFO")
-        MediBot_Preprocessor_lib.update_insurance_ids(csv_data, crosswalk)
+        MediBot_Preprocessor_lib.update_insurance_ids(csv_data, config, crosswalk)
         
         # Enrich the "Default Diagnosis #1" column based on the parsed docx for each row.
         # This needs to handle the different patient dates correctly so we get the right diagnosis code assigned to the right patient on the right date of service.
         # Currently, we've deleted all the second date entries for patients. As long as they exist in the system, they're just deleted.
         MediLink_ConfigLoader.log("CSV Pre-processor: Populating 'Default Diagnosis #1' based on Surgery Schedule and Crosswalk...", level="INFO")
+        print("Parsing Surgery Schedules...") # This step takes a while.
         MediBot_Preprocessor_lib.update_diagnosis_codes(csv_data)
         
         # Enrich the procedure code column based on the diagnosis code for each patient. 
-        MediLink_ConfigLoader.log("CSV Pre-processor: Populating 'Procedure Code' based on Crosswalk...", level="INFO")
-        MediBot_Preprocessor_lib.update_procedure_codes(csv_data)
+        # MediLink_ConfigLoader.log("CSV Pre-processor: Populating 'Procedure Code' based on Crosswalk...", level="INFO")
+        # MediBot_Preprocessor_lib.update_procedure_codes(csv_data, crosswalk)
     
     except Exception as e:
         message = "An error occurred while pre-processing CSV data. Please repair the CSV directly and try again: {}".format(e)
@@ -117,8 +121,8 @@ def intake_scan(csv_headers, field_mapping):
     missing_fields_warnings = []
     required_fields = config["required_fields"]
     
-    # MediLink_ConfigLoader.log("Intake Scan - Field Mapping: {}".format(field_mapping))
-    # MediLink_ConfigLoader.log("Intake Scan - CSV Headers: {}".format(csv_headers))
+    MediLink_ConfigLoader.log("Intake Scan - Field Mapping: {}".format(field_mapping), level="DEBUG")
+    MediLink_ConfigLoader.log("Intake Scan - CSV Headers: {}".format(csv_headers), level="DEBUG")
     
     # Iterate over the Medisoft fields defined in field_mapping
     for medisoft_field in field_mapping.keys():
@@ -150,14 +154,16 @@ def intake_scan(csv_headers, field_mapping):
         # Insurance Policy Numbers should be all alphanumeric with no other characters. 
         if 'Insurance Policy Number' in field:
             policy_number = identified_fields.get(header)
+            MediLink_ConfigLoader.log("Checking Insurance Policy Number '{}' for alphanumeric characters.".format(policy_number), level="DEBUG")
             if not bool(re.match("^[a-zA-Z0-9]*$", policy_number)):
                 missing_fields_warnings.append("WARNING: Insurance Policy Number '{}' contains invalid characters.".format(policy_number))
+                MediLink_ConfigLoader.log("Insurance Policy Number '{}' contains invalid characters.".format(policy_number), level="WARNING")
         # Additional checks can be added as needed for other fields
     
     if missing_fields_warnings:
-        MediLink_ConfigLoader.log("\nSome required fields could not be matched:")
+        MediLink_ConfigLoader.log("\nSome required fields could not be matched:", level="INFO")
         for warning in missing_fields_warnings:
-            MediLink_ConfigLoader.log(warning)
+            MediLink_ConfigLoader.log(warning, level="WARNING")
 
     return identified_fields
 
@@ -178,6 +184,8 @@ def main():
 
     config, crosswalk = MediLink_ConfigLoader.load_configuration()
     
+    client = APIClient()
+    
     # If no arguments provided, print usage instructions
     if not any(vars(args).values()):
         parser.print_help()
@@ -185,10 +193,10 @@ def main():
 
     if args.update_crosswalk:
         print("Updating the crosswalk...")
-        MediBot_Crosswalk_Library.crosswalk_update(config, crosswalk)
+        MediBot_Crosswalk_Library.crosswalk_update(client, config, crosswalk)
 
     if args.init_crosswalk:
-        MediBot_Crosswalk_Library.initialize_crosswalk_from_mapat()
+        MediBot_Crosswalk_Library.initialize_crosswalk_from_mapat(client)
 
     if args.load_csv:
         print("Loading CSV data...")