mcp-code-indexer 3.0.0__py3-none-any.whl → 3.0.3__py3-none-any.whl

mcp_code_indexer/database/database.py

@@ -110,7 +110,10 @@ class DatabaseManager:
         # Database initialization now uses the modern retry executor directly
         
         # Apply migrations in order
-        migrations_dir = Path(__file__).parent.parent.parent.parent / "migrations"
+        # Migrations are now bundled with the package
+        migrations_dir = Path(__file__).parent.parent / "migrations"
+        if not migrations_dir.exists():
+            raise RuntimeError(f"Could not find migrations directory at {migrations_dir}")
         migration_files = sorted(migrations_dir.glob("*.sql"))
         
         async with aiosqlite.connect(self.db_path) as db:
@@ -120,16 +123,48 @@ class DatabaseManager:
             # Configure WAL mode and optimizations for concurrent access
             await self._configure_database_optimizations(db, include_wal_mode=self.enable_wal_mode)
             
-            # Apply each migration
+            # Create migrations tracking table
+            await db.execute('''
+                CREATE TABLE IF NOT EXISTS migrations (
+                    id INTEGER PRIMARY KEY AUTOINCREMENT,
+                    filename TEXT UNIQUE NOT NULL,
+                    applied_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+                )
+            ''')
+            await db.commit()
+            
+            # Get list of already applied migrations
+            cursor = await db.execute('SELECT filename FROM migrations')
+            applied_migrations = {row[0] for row in await cursor.fetchall()}
+            
+            # Apply each migration that hasn't been applied yet
             for migration_file in migration_files:
-                logger.info(f"Applying migration: {migration_file.name}")
-                with open(migration_file, 'r') as f:
-                    migration_sql = f.read()
+                migration_name = migration_file.name
+                if migration_name in applied_migrations:
+                    logger.info(f"Skipping already applied migration: {migration_name}")
+                    continue
+                    
+                logger.info(f"Applying migration: {migration_name}")
+                try:
+                    migration_sql = migration_file.read_text(encoding='utf-8')
+                except AttributeError:
+                    # Fallback for regular file objects
+                    with open(migration_file, 'r', encoding='utf-8') as f:
+                        migration_sql = f.read()
                 
-                await db.executescript(migration_sql)
-                await db.commit()
+                try:
+                    await db.executescript(migration_sql)
+                    
+                    # Record that migration was applied
+                    await db.execute('INSERT INTO migrations (filename) VALUES (?)', (migration_name,))
+                    await db.commit()
+                    logger.info(f"Successfully applied migration: {migration_name}")
+                except Exception as e:
+                    logger.error(f"Failed to apply migration {migration_name}: {e}")
+                    await db.rollback()
+                    raise
             
-        logger.info(f"Database initialized at {self.db_path} with {len(migration_files)} migrations")
+        logger.info(f"Database initialized at {self.db_path} with {len(migration_files)} total migrations")
     
     async def _configure_database_optimizations(self, db: aiosqlite.Connection, include_wal_mode: bool = True) -> None:
         """

mcp_code_indexer/error_handler.py

@@ -254,6 +254,7 @@ class StructuredFormatter(logging.Formatter):
     def format(self, record: logging.LogRecord) -> str:
         """Format log record as structured JSON."""
         import json
+        from . import __version__
         
         log_data = {
             "timestamp": datetime.utcnow().isoformat(),
@@ -262,7 +263,8 @@ class StructuredFormatter(logging.Formatter):
             "message": record.getMessage(),
             "module": record.module,
             "function": record.funcName,
-            "line": record.lineno
+            "line": record.lineno,
+            "version": __version__
         }
         
         # Add structured data if present

mcp_code_indexer/migrations/001_initial.sql

@@ -0,0 +1,100 @@
+-- Initial database schema for MCP Code Indexer
+-- Creates tables for projects, file descriptions, and search functionality
+
+-- Enable WAL mode for better concurrency
+PRAGMA journal_mode=WAL;
+
+-- Enable foreign key support
+PRAGMA foreign_keys=ON;
+
+-- Projects table: stores project metadata and identification
+CREATE TABLE IF NOT EXISTS projects (
+    id TEXT PRIMARY KEY,
+    name TEXT NOT NULL,
+    remote_origin TEXT,
+    upstream_origin TEXT,
+    aliases TEXT DEFAULT '[]', -- JSON array of aliases
+    created DATETIME DEFAULT CURRENT_TIMESTAMP,
+    last_accessed DATETIME DEFAULT CURRENT_TIMESTAMP
+);
+
+-- Index for project lookups by various identifiers
+CREATE INDEX IF NOT EXISTS idx_projects_remote_origin ON projects(remote_origin);
+CREATE INDEX IF NOT EXISTS idx_projects_upstream_origin ON projects(upstream_origin);
+CREATE INDEX IF NOT EXISTS idx_projects_name ON projects(name);
+
+-- File descriptions table: stores file content descriptions
+CREATE TABLE IF NOT EXISTS file_descriptions (
+    project_id TEXT NOT NULL,
+    branch TEXT NOT NULL,
+    file_path TEXT NOT NULL,
+    description TEXT NOT NULL,
+    file_hash TEXT,
+    last_modified DATETIME DEFAULT CURRENT_TIMESTAMP,
+    version INTEGER DEFAULT 1,
+    source_project_id TEXT,
+    PRIMARY KEY (project_id, branch, file_path),
+    FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE,
+    FOREIGN KEY (source_project_id) REFERENCES projects(id) ON DELETE SET NULL
+);
+
+-- Indexes for file description queries
+CREATE INDEX IF NOT EXISTS idx_file_descriptions_project_branch ON file_descriptions(project_id, branch);
+CREATE INDEX IF NOT EXISTS idx_file_descriptions_file_hash ON file_descriptions(file_hash);
+CREATE INDEX IF NOT EXISTS idx_file_descriptions_last_modified ON file_descriptions(last_modified);
+
+-- Full-text search table for file descriptions
+CREATE VIRTUAL TABLE IF NOT EXISTS file_descriptions_fts USING fts5(
+    project_id,
+    branch,
+    file_path,
+    description,
+    content='file_descriptions',
+    content_rowid='rowid'
+);
+
+-- Triggers to keep FTS table in sync with file_descriptions
+CREATE TRIGGER IF NOT EXISTS file_descriptions_ai AFTER INSERT ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(rowid, project_id, branch, file_path, description)
+  VALUES (new.rowid, new.project_id, new.branch, new.file_path, new.description);
+END;
+
+CREATE TRIGGER IF NOT EXISTS file_descriptions_ad AFTER DELETE ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(file_descriptions_fts, rowid, project_id, branch, file_path, description)
+  VALUES ('delete', old.rowid, old.project_id, old.branch, old.file_path, old.description);
+END;
+
+CREATE TRIGGER IF NOT EXISTS file_descriptions_au AFTER UPDATE ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(file_descriptions_fts, rowid, project_id, branch, file_path, description)
+  VALUES ('delete', old.rowid, old.project_id, old.branch, old.file_path, old.description);
+  INSERT INTO file_descriptions_fts(rowid, project_id, branch, file_path, description)
+  VALUES (new.rowid, new.project_id, new.branch, new.file_path, new.description);
+END;
+
+-- Merge conflicts table: temporary storage for merge conflicts
+CREATE TABLE IF NOT EXISTS merge_conflicts (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    project_id TEXT NOT NULL,
+    file_path TEXT NOT NULL,
+    source_branch TEXT NOT NULL,
+    target_branch TEXT NOT NULL,
+    source_description TEXT NOT NULL,
+    target_description TEXT NOT NULL,
+    resolution TEXT,
+    created DATETIME DEFAULT CURRENT_TIMESTAMP,
+    FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+);
+
+-- Index for merge conflict lookups
+CREATE INDEX IF NOT EXISTS idx_merge_conflicts_project ON merge_conflicts(project_id, source_branch, target_branch);
+
+-- Token cache table: cache token counts for performance
+CREATE TABLE IF NOT EXISTS token_cache (
+    cache_key TEXT PRIMARY KEY,
+    token_count INTEGER NOT NULL,
+    created DATETIME DEFAULT CURRENT_TIMESTAMP,
+    expires DATETIME
+);
+
+-- Index for token cache cleanup
+CREATE INDEX IF NOT EXISTS idx_token_cache_expires ON token_cache(expires);

mcp_code_indexer/migrations/002_performance_indexes.sql

@@ -0,0 +1,61 @@
+-- Performance optimization migration for MCP Code Indexer
+-- Adds additional indexes and optimizations for common query patterns
+
+-- Additional composite indexes for performance optimization
+CREATE INDEX IF NOT EXISTS idx_file_descriptions_project_branch_path ON file_descriptions(project_id, branch, file_path);
+CREATE INDEX IF NOT EXISTS idx_file_descriptions_project_modified ON file_descriptions(project_id, last_modified DESC);
+CREATE INDEX IF NOT EXISTS idx_file_descriptions_source_project ON file_descriptions(source_project_id) WHERE source_project_id IS NOT NULL;
+
+-- Index for merge conflicts by project and branches
+CREATE INDEX IF NOT EXISTS idx_merge_conflicts_project_branches ON merge_conflicts(project_id, source_branch, target_branch, created DESC);
+
+-- Index for token cache expiration cleanup
+CREATE INDEX IF NOT EXISTS idx_token_cache_created ON token_cache(created DESC);
+
+-- Optimize FTS5 for prefix searches and ranking
+DROP TRIGGER IF EXISTS file_descriptions_ai;
+DROP TRIGGER IF EXISTS file_descriptions_ad; 
+DROP TRIGGER IF EXISTS file_descriptions_au;
+DROP TABLE IF EXISTS file_descriptions_fts;
+
+-- Recreate FTS table with better configuration
+CREATE VIRTUAL TABLE file_descriptions_fts USING fts5(
+    project_id UNINDEXED,
+    branch UNINDEXED,
+    file_path,
+    description,
+    content='file_descriptions',
+    content_rowid='rowid',
+    prefix='2 3 4'  -- Enable prefix searching for 2-4 character prefixes
+);
+
+-- Recreate triggers for FTS sync
+CREATE TRIGGER file_descriptions_ai AFTER INSERT ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(rowid, project_id, branch, file_path, description)
+  VALUES (new.rowid, new.project_id, new.branch, new.file_path, new.description);
+END;
+
+CREATE TRIGGER file_descriptions_ad AFTER DELETE ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(file_descriptions_fts, rowid, project_id, branch, file_path, description)
+  VALUES ('delete', old.rowid, old.project_id, old.branch, old.file_path, old.description);
+END;
+
+CREATE TRIGGER file_descriptions_au AFTER UPDATE ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(file_descriptions_fts, rowid, project_id, branch, file_path, description)
+  VALUES ('delete', old.rowid, old.project_id, old.branch, old.file_path, old.description);
+  INSERT INTO file_descriptions_fts(rowid, project_id, branch, file_path, description)
+  VALUES (new.rowid, new.project_id, new.branch, new.file_path, new.description);
+END;
+
+-- Rebuild FTS index if there's existing data
+INSERT INTO file_descriptions_fts(file_descriptions_fts) VALUES('rebuild');
+
+-- Set SQLite optimizations
+PRAGMA optimize;
+PRAGMA auto_vacuum = INCREMENTAL;
+PRAGMA temp_store = MEMORY;
+PRAGMA mmap_size = 268435456; -- 256MB memory mapping
+PRAGMA cache_size = -64000;   -- 64MB cache
+
+-- Update statistics for query planner
+ANALYZE;

mcp_code_indexer/migrations/003_project_overviews.sql

@@ -0,0 +1,20 @@
+-- Migration 003: Add project_overviews table for condensed codebase overviews
+-- This table stores comprehensive narrative overviews of entire codebases
+-- as an alternative to file-by-file descriptions
+
+CREATE TABLE IF NOT EXISTS project_overviews (
+    project_id TEXT NOT NULL,
+    branch TEXT NOT NULL,
+    overview TEXT NOT NULL,
+    last_modified TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+    total_files INTEGER NOT NULL DEFAULT 0,
+    total_tokens INTEGER NOT NULL DEFAULT 0,
+    PRIMARY KEY (project_id, branch),
+    FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+) WITHOUT ROWID;
+
+-- Index for temporal queries and overview management
+CREATE INDEX IF NOT EXISTS idx_project_overviews_last_modified ON project_overviews(last_modified);
+
+-- Index for project-based queries
+CREATE INDEX IF NOT EXISTS idx_project_overviews_project_id ON project_overviews(project_id);

mcp_code_indexer/migrations/004_remove_branch_dependency.sql

@@ -0,0 +1,184 @@
+-- Migration 004: Remove branch dependency from database schema
+-- This migration consolidates multi-branch data and simplifies the schema
+-- by removing branch columns from file_descriptions and project_overviews tables
+
+-- Ensure WAL mode is enabled for safe migrations
+PRAGMA journal_mode=WAL;
+
+-- Temporarily disable foreign key constraints for migration
+PRAGMA foreign_keys=OFF;
+
+-- Start transaction for atomic migration
+BEGIN TRANSACTION;
+
+-- Create new file_descriptions table without branch dependency
+CREATE TABLE file_descriptions_new (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    project_id TEXT NOT NULL,
+    file_path TEXT NOT NULL,
+    description TEXT NOT NULL,
+    file_hash TEXT,
+    last_modified DATETIME DEFAULT CURRENT_TIMESTAMP,
+    version INTEGER DEFAULT 1,
+    source_project_id TEXT,
+    to_be_cleaned INTEGER DEFAULT NULL, -- UNIX timestamp for cleanup, NULL = active
+    UNIQUE(project_id, file_path),
+    FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE,
+    FOREIGN KEY (source_project_id) REFERENCES projects(id) ON DELETE SET NULL
+);
+
+-- Create indexes for the new table
+CREATE INDEX idx_file_descriptions_new_project_id ON file_descriptions_new(project_id);
+CREATE INDEX idx_file_descriptions_new_file_hash ON file_descriptions_new(file_hash);
+CREATE INDEX idx_file_descriptions_new_last_modified ON file_descriptions_new(last_modified);
+CREATE INDEX idx_file_descriptions_new_to_be_cleaned ON file_descriptions_new(to_be_cleaned);
+
+-- Clean up orphaned data before consolidation
+-- Remove file_descriptions that reference non-existent projects
+DELETE FROM file_descriptions 
+WHERE project_id NOT IN (SELECT id FROM projects);
+
+-- Remove file_descriptions with invalid source_project_id
+UPDATE file_descriptions 
+SET source_project_id = NULL 
+WHERE source_project_id IS NOT NULL 
+  AND source_project_id NOT IN (SELECT id FROM projects);
+
+-- Consolidate data from old table - keep most recent description per file
+-- This handles multi-branch scenarios by selecting the newest data
+INSERT INTO file_descriptions_new (
+    project_id, file_path, description, file_hash, last_modified, version, source_project_id
+)
+SELECT 
+    project_id,
+    file_path,
+    description,
+    file_hash,
+    last_modified,
+    version,
+    source_project_id
+FROM (
+    SELECT 
+        project_id,
+        file_path,
+        description,
+        file_hash,
+        last_modified,
+        version,
+        source_project_id,
+        ROW_NUMBER() OVER (
+            PARTITION BY project_id, file_path 
+            ORDER BY last_modified DESC
+        ) as rn
+    FROM file_descriptions
+) ranked_descriptions
+WHERE rn = 1;
+
+-- Create new project_overviews table without branch dependency
+CREATE TABLE project_overviews_new (
+    project_id TEXT PRIMARY KEY,
+    overview TEXT NOT NULL,
+    last_modified TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+    total_files INTEGER NOT NULL DEFAULT 0,
+    total_tokens INTEGER NOT NULL DEFAULT 0,
+    FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE
+);
+
+-- Create indexes for the new table
+CREATE INDEX idx_project_overviews_new_last_modified ON project_overviews_new(last_modified);
+
+-- Clean up orphaned project overviews
+DELETE FROM project_overviews 
+WHERE project_id NOT IN (SELECT id FROM projects);
+
+-- Consolidate project overviews - keep the one with most tokens (most comprehensive)
+INSERT INTO project_overviews_new (
+    project_id, overview, last_modified, total_files, total_tokens
+)
+SELECT 
+    project_id,
+    overview,
+    last_modified,
+    total_files,
+    total_tokens
+FROM (
+    SELECT 
+        project_id,
+        overview,
+        last_modified,
+        total_files,
+        total_tokens,
+        ROW_NUMBER() OVER (
+            PARTITION BY project_id 
+            ORDER BY total_tokens DESC, last_modified DESC
+        ) as rn
+    FROM project_overviews
+) ranked_overviews
+WHERE rn = 1;
+
+-- Drop FTS5 triggers for old table
+DROP TRIGGER IF EXISTS file_descriptions_ai;
+DROP TRIGGER IF EXISTS file_descriptions_ad;
+DROP TRIGGER IF EXISTS file_descriptions_au;
+
+-- Drop FTS5 virtual table
+DROP TABLE IF EXISTS file_descriptions_fts;
+
+-- Drop old tables
+DROP TABLE file_descriptions;
+DROP TABLE project_overviews;
+
+-- Rename new tables to original names
+ALTER TABLE file_descriptions_new RENAME TO file_descriptions;
+ALTER TABLE project_overviews_new RENAME TO project_overviews;
+
+-- Create new FTS5 virtual table without branch column
+CREATE VIRTUAL TABLE file_descriptions_fts USING fts5(
+    project_id,
+    file_path,
+    description,
+    content='file_descriptions',
+    content_rowid='id'
+);
+
+-- Populate FTS5 table with existing data (only active records)
+INSERT INTO file_descriptions_fts(rowid, project_id, file_path, description)
+SELECT id, project_id, file_path, description 
+FROM file_descriptions 
+WHERE to_be_cleaned IS NULL;
+
+-- Create new FTS5 triggers for the updated schema
+CREATE TRIGGER file_descriptions_ai AFTER INSERT ON file_descriptions BEGIN
+  -- Only index active records (not marked for cleanup)
+  INSERT INTO file_descriptions_fts(rowid, project_id, file_path, description)
+  SELECT new.id, new.project_id, new.file_path, new.description
+  WHERE new.to_be_cleaned IS NULL;
+END;
+
+CREATE TRIGGER file_descriptions_ad AFTER DELETE ON file_descriptions BEGIN
+  INSERT INTO file_descriptions_fts(file_descriptions_fts, rowid, project_id, file_path, description)
+  VALUES ('delete', old.id, old.project_id, old.file_path, old.description);
+END;
+
+CREATE TRIGGER file_descriptions_au AFTER UPDATE ON file_descriptions BEGIN
+  -- Remove old record from FTS
+  INSERT INTO file_descriptions_fts(file_descriptions_fts, rowid, project_id, file_path, description)
+  VALUES ('delete', old.id, old.project_id, old.file_path, old.description);
+  
+  -- Add new record only if it's active (not marked for cleanup)
+  INSERT INTO file_descriptions_fts(rowid, project_id, file_path, description)
+  SELECT new.id, new.project_id, new.file_path, new.description
+  WHERE new.to_be_cleaned IS NULL;
+END;
+
+-- Update merge_conflicts table to remove branch references (optional cleanup)
+-- This table structure can remain as-is since it's used for temporary conflict resolution
+-- but we'll remove unused indexes that reference branches
+DROP INDEX IF EXISTS idx_merge_conflicts_project;
+CREATE INDEX idx_merge_conflicts_project ON merge_conflicts(project_id, created);
+
+-- Re-enable foreign key constraints
+PRAGMA foreign_keys=ON;
+
+-- Commit the migration
+COMMIT;

{mcp_code_indexer-3.0.0.dist-info → mcp_code_indexer-3.0.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: mcp-code-indexer
-Version: 3.0.0
+Version: 3.0.3
 Summary: MCP server that tracks file descriptions across codebases, enabling AI agents to efficiently navigate and understand code through searchable summaries and token-aware overviews.
 Author: MCP Code Indexer Contributors
 Maintainer: MCP Code Indexer Contributors
@@ -59,8 +59,8 @@ Dynamic: requires-python
 
 # MCP Code Indexer 🚀
 
-[![PyPI version](https://badge.fury.io/py/mcp-code-indexer.svg?19)](https://badge.fury.io/py/mcp-code-indexer)
-[![Python](https://img.shields.io/pypi/pyversions/mcp-code-indexer.svg?19)](https://pypi.org/project/mcp-code-indexer/)
+[![PyPI version](https://badge.fury.io/py/mcp-code-indexer.svg?21)](https://badge.fury.io/py/mcp-code-indexer)
+[![Python](https://img.shields.io/pypi/pyversions/mcp-code-indexer.svg?21)](https://pypi.org/project/mcp-code-indexer/)
 [![License](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)
 
 A production-ready **Model Context Protocol (MCP) server** that revolutionizes how AI agents navigate and understand codebases. Built for high-concurrency environments with advanced database resilience, the server provides instant access to intelligent descriptions, semantic search, and context-aware recommendations while maintaining 800+ writes/sec throughput.

{mcp_code_indexer-3.0.0.dist-info → mcp_code_indexer-3.0.3.dist-info}/RECORD

@@ -4,7 +4,7 @@ mcp_code_indexer/ask_handler.py,sha256=rFljJtqP_YL3E9H2Hgk04yURzHw_sqm6muB5RTlP_
 mcp_code_indexer/claude_api_handler.py,sha256=4lgp-KsDMOmjrln3QhdJuM5pHvaB3kUwHOUk9l5adi4,13628
 mcp_code_indexer/cleanup_manager.py,sha256=1x2de8Mr9dL92q4ubEebsWSF_2n8Yxk549ZohYHNIkU,9358
 mcp_code_indexer/deepask_handler.py,sha256=iAFA1pKfAnurHBprIyP1TaecPzZ5YhBs-oR8Eccxoe4,18323
-mcp_code_indexer/error_handler.py,sha256=cNSUFFrGBMLDv4qa78c7495L1wSl_dXCRbzCJOidx-Q,11590
+mcp_code_indexer/error_handler.py,sha256=x6dHezVeKcD2ealNLBndt-3SiPiMfh9VOUNoqQSk3rI,11660
 mcp_code_indexer/file_scanner.py,sha256=ctXeZMROgDThEtjzsANTK9TbK-fhTScMBd4iyuleBT4,11734
 mcp_code_indexer/git_hook_handler.py,sha256=OMPfQlykqR2_cE5IxGqbAI92afLOOJxsvXbAQIZrdLU,36579
 mcp_code_indexer/logging_config.py,sha256=tf_U-Zz_axDXRV9s7TfHEeUrBjT1QBWkzPuiyZMffBU,10252
@@ -15,19 +15,23 @@ mcp_code_indexer/token_counter.py,sha256=WrifOkbF99nWWHlRlhCHAB2KN7qr83GOHl7apE-
 mcp_code_indexer/data/stop_words_english.txt,sha256=7Zdd9ameVgA6tN_zuXROvHXD4hkWeELVywPhb7FJEkw,6343
 mcp_code_indexer/database/__init__.py,sha256=aPq_aaRp0aSwOBIq9GkuMNjmLxA411zg2vhdrAuHm-w,38
 mcp_code_indexer/database/connection_health.py,sha256=s2r9L_KipH5NlemAUDnhBQO90Dn4b_0Ht9UDs7F6QPk,24432
-mcp_code_indexer/database/database.py,sha256=RAlQ9sgE_aMnj6Nu_bRIgghYXq5yejaA7hnXTww_BFU,50962
+mcp_code_indexer/database/database.py,sha256=4y2JqK0opz4MZk1R_zMBi5B-hRyXd_jt4cksWIiU34A,52724
 mcp_code_indexer/database/exceptions.py,sha256=AgpRA9Z5R-GoWYdQSPeSdYvAXDopFCQkLGN3jD7Ha4E,10215
 mcp_code_indexer/database/models.py,sha256=FbNtP9Z0bDCoe8JjsYT1HWp0uYsxgZFHR0Blt3d8TBY,7054
 mcp_code_indexer/database/retry_executor.py,sha256=QUayjkCk8OsckVMYiJ_HBQ9NTUss-H8GQeUIUbbw4_U,13419
 mcp_code_indexer/middleware/__init__.py,sha256=p-mP0pMsfiU2yajCPvokCUxUEkh_lu4XJP1LyyMW2ug,220
 mcp_code_indexer/middleware/error_middleware.py,sha256=5agJTAkkPogfPGnja1V9JtG9RG-BiOALIJYctK3byJQ,11730
+mcp_code_indexer/migrations/001_initial.sql,sha256=hIXkCP4LA_4A9HJ1CHU0a1DD-a6EN6u-uJPMqW0c2Yo,4120
+mcp_code_indexer/migrations/002_performance_indexes.sql,sha256=FlKbmcJyKAHTKmjxmpk8ABe6eMcQahz8RciRYcREY_E,2846
+mcp_code_indexer/migrations/003_project_overviews.sql,sha256=pPzn7UmJ_Bda9mJ1nYTN1GeuYwdQHC7Fva6PvWaucUw,891
+mcp_code_indexer/migrations/004_remove_branch_dependency.sql,sha256=whZvj2qfba1-Xq7Vg4IfpCpIrRKN21AdtG0gZbFSRi4,6466
 mcp_code_indexer/server/__init__.py,sha256=16xMcuriUOBlawRqWNBk6niwrvtv_JD5xvI36X1Vsmk,41
 mcp_code_indexer/server/mcp_server.py,sha256=EQnwRbjF17AdPvO_HPb6d7cmpxUN51qbyMuhQXrtetU,63168
 mcp_code_indexer/tiktoken_cache/9b5ad71b2ce5302211f9c61530b329a4922fc6a4,sha256=Ijkht27pm96ZW3_3OFE-7xAPtR0YyTWXoRO8_-hlsqc,1681126
 mcp_code_indexer/tools/__init__.py,sha256=m01mxML2UdD7y5rih_XNhNSCMzQTz7WQ_T1TeOcYlnE,49
-mcp_code_indexer-3.0.0.dist-info/licenses/LICENSE,sha256=JN9dyPPgYwH9C-UjYM7FLNZjQ6BF7kAzpF3_4PwY4rY,1086
-mcp_code_indexer-3.0.0.dist-info/METADATA,sha256=yRCsAbs-iHhIOFjihh6PZcgB7yDzihTqxkU3nsdaBZM,20165
-mcp_code_indexer-3.0.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-mcp_code_indexer-3.0.0.dist-info/entry_points.txt,sha256=8HqWOw1Is7jOP1bvIgaSwouvT9z_Boe-9hd4NzyJOhY,68
-mcp_code_indexer-3.0.0.dist-info/top_level.txt,sha256=yKYCM-gMGt-cnupGfAhnZaoEsROLB6DQ1KFUuyKx4rw,17
-mcp_code_indexer-3.0.0.dist-info/RECORD,,
+mcp_code_indexer-3.0.3.dist-info/licenses/LICENSE,sha256=JN9dyPPgYwH9C-UjYM7FLNZjQ6BF7kAzpF3_4PwY4rY,1086
+mcp_code_indexer-3.0.3.dist-info/METADATA,sha256=KhSmG_81Lli-5xIPfTy1uOCGYl6Ec1vqGrpaq0IE9ls,20165
+mcp_code_indexer-3.0.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+mcp_code_indexer-3.0.3.dist-info/entry_points.txt,sha256=8HqWOw1Is7jOP1bvIgaSwouvT9z_Boe-9hd4NzyJOhY,68
+mcp_code_indexer-3.0.3.dist-info/top_level.txt,sha256=yKYCM-gMGt-cnupGfAhnZaoEsROLB6DQ1KFUuyKx4rw,17
+mcp_code_indexer-3.0.3.dist-info/RECORD,,