mcDETECT 2.0.1__py3-none-any.whl → 2.0.3__py3-none-any.whl

mcDETECT/__init__.py

@@ -1,3 +1,6 @@
-__version__ = "2.0.1"
-from .utils import *
-from .model import mcDETECT, spot_neuron, spot_granule, neighbor_granule, neuron_embedding_one_hot, neuron_embedding_spatial_weight
+__version__ = "2.0.3"
+
+from . import model
+from . import utils
+
+__all__ = ["model", "utils"]

mcDETECT/model.py

@@ -11,6 +11,7 @@ from shapely.geometry import Point
 from sklearn.cluster import DBSCAN
 from sklearn.preprocessing import OneHotEncoder
 
+
 from .utils import *
 
 

mcDETECT/utils.py

@@ -100,26 +100,26 @@ def weighted_spearmanr(A, B, weights):
     return weighted_spearman_corr
 
 
-def assign_palette_to_adata(adata, obs_key = "granule_expr_cluster_hierarchical", cmap_name = "tab10"):
+def assign_palette_to_adata(adata, obs_key = "granule_expr_cluster_hierarchical", self_defined = False, cmap_name = "tab10"):
     
     adata = adata.copy()
     
-    # ensure the column is categorical
     if not pd.api.types.is_categorical_dtype(adata.obs[obs_key]):
         adata.obs[obs_key] = adata.obs[obs_key].astype("category")
-
-    # extract categories and number of levels
+    
     categories = adata.obs[obs_key].cat.categories
     n_categories = len(categories)
-
-    # choose or extend the colormap
-    base_colors = plt.get_cmap(cmap_name).colors
-    if n_categories > len(base_colors):
-        color_palette = sns.color_palette(cmap_name, n_categories)
+    
+    if self_defined:
+        cmap = plt.colormaps[cmap_name]
+        color_palette = [cmap(i) for i in range(n_categories)]
     else:
-        color_palette = base_colors[:n_categories]
-
-    # convert to hex and assign
+        base_colors = plt.get_cmap(cmap_name).colors
+        if n_categories > len(base_colors):
+            color_palette = sns.color_palette(cmap_name, n_categories)
+        else:
+            color_palette = base_colors[:n_categories]
+    
     adata.uns[f"{obs_key}_colors"] = [mcolors.to_hex(c) for c in color_palette]
     
     return adata

{mcdetect-2.0.1.dist-info → mcdetect-2.0.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: mcDETECT
-Version: 2.0.1
+Version: 2.0.3
 Summary: Uncovering the dark transcriptome in polarized neuronal compartments with mcDETECT
 Home-page: https://github.com/chen-yang-yuan/mcDETECT
 Author: Chenyang Yuan

mcdetect-2.0.3.dist-info/RECORD

@@ -0,0 +1,8 @@
+mcDETECT/__init__.py,sha256=SPCzZZOrSFKUNUYRrFbrBWF0FPN6OUzUpRP4zjlfQr0,92
+mcDETECT/model.py,sha256=zEdHqgwTjDi7HxdLW0aPG2j8uLMPiobNu-BcJraAG8g,28047
+mcDETECT/utils.py,sha256=0gvqZV7sGi8qvvdC5x9XScyiTXlSfqbUt1zks4t7Xd4,4545
+mcdetect-2.0.3.dist-info/licenses/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
+mcdetect-2.0.3.dist-info/METADATA,sha256=1ny7qrjmE9p1Ybgmw3k4QnVJSKlXVJR4nlBNPxj3RCU,3016
+mcdetect-2.0.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+mcdetect-2.0.3.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
+mcdetect-2.0.3.dist-info/RECORD,,

mcdetect-2.0.1.dist-info/RECORD

@@ -1,8 +0,0 @@
-mcDETECT/__init__.py,sha256=o9fQTRgcHPisSCcv0Cy-AtdiTSWrj-ITBK_FQxfnmKE,174
-mcDETECT/model.py,sha256=-r2_Ve0wxOALxiFk0REa58WjMea495yLZ6oXT-WWekw,28046
-mcDETECT/utils.py,sha256=kKw7KnrS-0llqtT32S_PDkag1jk4CWYkSm-FZeIJFAw,4510
-mcdetect-2.0.1.dist-info/licenses/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
-mcdetect-2.0.1.dist-info/METADATA,sha256=qMO7hrWgabHHp1_UxlDvsLmQYaBC7Nf85RPNxyBvA8o,3016
-mcdetect-2.0.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-mcdetect-2.0.1.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
-mcdetect-2.0.1.dist-info/RECORD,,