mcDETECT 1.0.7__py3-none-any.whl → 1.0.9__py3-none-any.whl

mcDETECT/__init__.py

@@ -1 +1,2 @@
+__version__ = "1.0.9"
 from .model import mcDETECT

mcDETECT/model.py

@@ -361,16 +361,16 @@ class mcDETECT:
             transcripts = self.transcripts[self.transcripts['target'].isin(genes)]
         
         # construct bins
-        x_bins, y_bins = self.construct_grid(grid_len = None)
+        x_bins, y_bins = self.construct_grid(grid_len = grid_len)
         
         # initialize data
         X = np.zeros((len(genes), (len(x_bins) - 1) * (len(y_bins) - 1)))
         global_x, global_y = [], []
         
         # coordinates
-        for i in list(x_bins):
+        for i in list(x_bins)[:-1]:
             center_x = i + 0.5 * grid_len
-            for j in list(y_bins):
+            for j in list(y_bins)[:-1]:
                 center_y = j + 0.5 * grid_len
                 global_x.append(center_x)
                 global_y.append(center_y)
@@ -380,8 +380,8 @@ class mcDETECT:
             target_gene = transcripts[transcripts['target'] == k]
             count_gene, _, _ = np.histogram2d(target_gene['global_x'], target_gene['global_y'], bins = [x_bins, y_bins])
             X[k_idx, :] = count_gene.flatten()
-            if k_idx % 50 == 0:
-                print("{} out of {} genes profiled!".format(k_idx + 1, len(genes)))
+            if k_idx % 100 == 0:
+                print("{} out of {} genes profiled!".format(k_idx, len(genes)))
         
         # spot id
         spot_id = []

{mcdetect-1.0.7.dist-info → mcdetect-1.0.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: mcDETECT
-Version: 1.0.7
+Version: 1.0.9
 Summary: mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics
 Home-page: https://github.com/chen-yang-yuan/mcDETECT
 Author: Chenyang Yuan

mcdetect-1.0.9.dist-info/RECORD

@@ -0,0 +1,7 @@
+mcDETECT/__init__.py,sha256=UWqWQcFd3GZpNzrPhDi09yWjQ0tTDM3QNowIJoncX0s,49
+mcDETECT/model.py,sha256=L9iQyLuvZzXDxL4Zv4xJGo3o2YgbL49UtLXMmVHhxYY,21201
+mcdetect-1.0.9.dist-info/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
+mcdetect-1.0.9.dist-info/METADATA,sha256=LrZ0PS1uWnrC3xJ2N3w36fJgDdTMQgnzuoKF4j6gpZw,2819
+mcdetect-1.0.9.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
+mcdetect-1.0.9.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
+mcdetect-1.0.9.dist-info/RECORD,,

mcdetect-1.0.7.dist-info/RECORD

@@ -1,7 +0,0 @@
-mcDETECT/__init__.py,sha256=smjxcWMgqIGgbQ47Hx0TRXtiJLHcuXizBk9DTfAZp3s,27
-mcDETECT/model.py,sha256=34shhlCEc8RDb35fsiYqXz3VVzHQNhRcfimvZIf_POw,21190
-mcdetect-1.0.7.dist-info/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
-mcdetect-1.0.7.dist-info/METADATA,sha256=vegGNyJmoZJWxxIVHgRjB27aEr8xHkPkU6hmuvpwDA8,2819
-mcdetect-1.0.7.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
-mcdetect-1.0.7.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
-mcdetect-1.0.7.dist-info/RECORD,,