mcDETECT 1.0.5__py3-none-any.whl → 1.0.7__py3-none-any.whl

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Files changed (7) hide show
  1. mcDETECT/model.py +2 -2
  2. {mcdetect-1.0.5.dist-info → mcdetect-1.0.7.dist-info}/METADATA +1 -1
  3. mcdetect-1.0.7.dist-info/RECORD +7 -0
  4. mcdetect-1.0.5.dist-info/RECORD +0 -7
  5. {mcdetect-1.0.5.dist-info → mcdetect-1.0.7.dist-info}/LICENSE +0 -0
  6. {mcdetect-1.0.5.dist-info → mcdetect-1.0.7.dist-info}/WHEEL +0 -0
  7. {mcdetect-1.0.5.dist-info → mcdetect-1.0.7.dist-info}/top_level.txt +0 -0
mcDETECT/model.py CHANGED
@@ -364,7 +364,7 @@ class mcDETECT:
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  x_bins, y_bins = self.construct_grid(grid_len = None)
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  # initialize data
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- X = np.zeros((len(genes), len(x_bins) * len(y_bins)))
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+ X = np.zeros((len(genes), (len(x_bins) - 1) * (len(y_bins) - 1)))
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  global_x, global_y = [], []
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  # coordinates
@@ -377,7 +377,7 @@ class mcDETECT:
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  # count matrix
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  for k_idx, k in enumerate(genes):
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- target_gene = transcripts[transcripts['feature_name'] == k]
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+ target_gene = transcripts[transcripts['target'] == k]
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  count_gene, _, _ = np.histogram2d(target_gene['global_x'], target_gene['global_y'], bins = [x_bins, y_bins])
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  X[k_idx, :] = count_gene.flatten()
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  if k_idx % 50 == 0:
{mcdetect-1.0.5.dist-info → mcdetect-1.0.7.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: mcDETECT
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- Version: 1.0.5
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+ Version: 1.0.7
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  Summary: mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics
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  Home-page: https://github.com/chen-yang-yuan/mcDETECT
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  Author: Chenyang Yuan
mcdetect-1.0.7.dist-info/RECORD ADDED
@@ -0,0 +1,7 @@
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+ mcDETECT/__init__.py,sha256=smjxcWMgqIGgbQ47Hx0TRXtiJLHcuXizBk9DTfAZp3s,27
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+ mcDETECT/model.py,sha256=34shhlCEc8RDb35fsiYqXz3VVzHQNhRcfimvZIf_POw,21190
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+ mcdetect-1.0.7.dist-info/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
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+ mcdetect-1.0.7.dist-info/METADATA,sha256=vegGNyJmoZJWxxIVHgRjB27aEr8xHkPkU6hmuvpwDA8,2819
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+ mcdetect-1.0.7.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
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+ mcdetect-1.0.7.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
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+ mcdetect-1.0.7.dist-info/RECORD,,
mcdetect-1.0.5.dist-info/RECORD DELETED
@@ -1,7 +0,0 @@
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- mcDETECT/__init__.py,sha256=smjxcWMgqIGgbQ47Hx0TRXtiJLHcuXizBk9DTfAZp3s,27
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- mcDETECT/model.py,sha256=UViArRsE_aNEcgyrab8hl5UZp02ztgm-zuJtw-RL9X4,21184
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- mcdetect-1.0.5.dist-info/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
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- mcdetect-1.0.5.dist-info/METADATA,sha256=IctOMMeNnapFbwo43ueVz2ELVucoAqe5JCrjQqSLtb8,2819
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- mcdetect-1.0.5.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
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- mcdetect-1.0.5.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
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- mcdetect-1.0.5.dist-info/RECORD,,