mcDETECT 1.0.11__py3-none-any.whl → 1.0.12__py3-none-any.whl

mcDETECT/__init__.py

@@ -1,2 +1,2 @@
-__version__ = "1.0.11"
+__version__ = "1.0.12"
 from .model import closest, mcDETECT

mcDETECT/model.py

@@ -167,9 +167,7 @@ class mcDETECT:
             sphere = pd.DataFrame(list(zip(sphere_x, sphere_y, sphere_z, layer_z, sphere_r, sphere_size, sphere_comp, sphere_score)),
                                   columns = ["sphere_x", "sphere_y", "sphere_z", "layer_z", "sphere_r", "size", "comp", "in_nucleus"])
             sphere["gene"] = [j] * sphere.shape[0]
-            sphere["gene"] = sphere["gene"].astype(str)
-            sphere["size"] = pd.to_numeric(sphere["size"])
-            sphere["comp"] = pd.to_numeric(sphere["comp"])
+            sphere = sphere.astype({"sphere_x": float, "sphere_y": float, "sphere_z": float, "layer_z": int, "sphere_r": float, "size": float, "comp": float, "in_nucleus": int, "gene": str})
             
             # split low- and high-in-nucleus spheres
             sphere_low = sphere[(sphere["sphere_r"] < self.size_thr) & (sphere["in_nucleus"] < self.in_nucleus_thr[0])]
@@ -347,6 +345,7 @@ class mcDETECT:
         # construct spatial transcriptome profile
         adata = anndata.AnnData(X = np.transpose(X), obs = synapse)
         adata.obs["synapse_id"] = ["syn_{}".format(i) for i in range(synapse.shape[0])]
+        adata.obs["synapse_id"] = adata.obs["synapse_id"].astype(str)
         adata.obs.rename(columns = {"sphere_x": "global_x", "sphere_y": "global_y", "sphere_z": "global_z"}, inplace = True)
         adata.var["genes"] = genes
         adata.var_names = genes

{mcdetect-1.0.11.dist-info → mcdetect-1.0.12.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: mcDETECT
-Version: 1.0.11
+Version: 1.0.12
 Summary: mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics
 Home-page: https://github.com/chen-yang-yuan/mcDETECT
 Author: Chenyang Yuan

mcdetect-1.0.12.dist-info/RECORD

@@ -0,0 +1,7 @@
+mcDETECT/__init__.py,sha256=8DC3jJ35kT7b51bP9HtbDsCRc8_vT6nUaXCZBaSM5Tg,59
+mcDETECT/model.py,sha256=pl6BOByor3Czj1UbxQX7_VzBUyNhz1tG_z7IGz2nR80,21462
+mcdetect-1.0.12.dist-info/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
+mcdetect-1.0.12.dist-info/METADATA,sha256=AJjMolAwV98Px9PioTv0U_iJl0ypTKMFRgSvCQbBkAg,2820
+mcdetect-1.0.12.dist-info/WHEEL,sha256=beeZ86-EfXScwlR_HKu4SllMC9wUEj_8Z_4FJ3egI2w,91
+mcdetect-1.0.12.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
+mcdetect-1.0.12.dist-info/RECORD,,

mcdetect-1.0.11.dist-info/RECORD

@@ -1,7 +0,0 @@
-mcDETECT/__init__.py,sha256=tf3P7OfH-LTbgFaCTkG4itCia54VCCsR6yQ0v6mVWEE,59
-mcDETECT/model.py,sha256=_xTupdmK0LJrgaFF34Chj3JEl45iKs7T8j-ianfyOcE,21375
-mcdetect-1.0.11.dist-info/LICENSE,sha256=uxq-shEWOGTIGVnQLmpElILmfCkuUhFZRAMnZUiKvtg,1070
-mcdetect-1.0.11.dist-info/METADATA,sha256=eWBTNSQE9kJACbjBo5zrOM58qotLLkRN1iEC4hBVKe8,2820
-mcdetect-1.0.11.dist-info/WHEEL,sha256=beeZ86-EfXScwlR_HKu4SllMC9wUEj_8Z_4FJ3egI2w,91
-mcdetect-1.0.11.dist-info/top_level.txt,sha256=WwzBojt5U-T2hZ8llO6XgpM9OFIBkWQQldQKu19O8EY,9
-mcdetect-1.0.11.dist-info/RECORD,,