maxframe 0.1.0b5__cp39-cp39-macosx_11_0_arm64.whl

maxframe/dataframe/datasource/read_csv.py

@@ -0,0 +1,528 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+# Copyright 1999-2024 Alibaba Group Holding Ltd.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+from io import BytesIO
+from urllib.parse import urlparse
+
+import numpy as np
+import pandas as pd
+
+try:
+    from pyarrow import NativeFile
+except ImportError:  # pragma: no cover
+    NativeFile = None
+
+from ... import opcodes
+from ...config import options
+from ...core import OutputType
+from ...lib.filesystem import get_fs, glob, open_file
+from ...serialization.serializables import (
+    AnyField,
+    BoolField,
+    DictField,
+    Int32Field,
+    Int64Field,
+    ListField,
+    StringField,
+)
+from ...utils import lazy_import, parse_readable_size
+from ..utils import parse_index, to_arrow_dtypes
+from .core import ColumnPruneSupportedDataSourceMixin, IncrementalIndexDatasource
+
+cudf = lazy_import("cudf")
+
+
+def _find_delimiter(f, block_size=2**16):
+    delimiter = b"\n"
+    if f.tell() == 0:
+        return 0
+    while True:
+        b = f.read(block_size)
+        if not b:
+            return f.tell()
+        elif delimiter in b:
+            return f.tell() - len(b) + b.index(delimiter) + 1
+
+
+def _find_hdfs_start_end(f, offset, size):
+    # As pyarrow doesn't support `readline` operation (https://github.com/apache/arrow/issues/3838),
+    # we need to find the start and end of file block manually.
+
+    # Be careful with HdfsFile's seek, it doesn't allow seek beyond EOF.
+    loc = min(offset, f.size())
+    f.seek(loc)
+    start = _find_delimiter(f)
+    loc = min(offset + size, f.size())
+    f.seek(loc)
+    end = _find_delimiter(f)
+    return start, end
+
+
+def _find_chunk_start_end(f, offset, size):
+    if NativeFile is not None and isinstance(f, NativeFile):
+        return _find_hdfs_start_end(f, offset, size)
+    f.seek(offset)
+    if f.tell() == 0:
+        start = 0
+    else:
+        f.readline()
+        start = f.tell()
+    f.seek(offset + size)
+    f.readline()
+    end = f.tell()
+    return start, end
+
+
+class DataFrameReadCSV(
+    IncrementalIndexDatasource,
+    ColumnPruneSupportedDataSourceMixin,
+):
+    _op_type_ = opcodes.READ_CSV
+
+    path = AnyField("path")
+    names = ListField("names")
+    sep = StringField("sep")
+    header = AnyField("header")
+    index_col = Int32Field("index_col")
+    compression = StringField("compression")
+    usecols = AnyField("usecols")
+    offset = Int64Field("offset")
+    size = Int64Field("size")
+    incremental_index = BoolField("incremental_index")
+    use_arrow_dtype = BoolField("use_arrow_dtype")
+    keep_usecols_order = BoolField("keep_usecols_order", default=None)
+    storage_options = DictField("storage_options")
+    merge_small_files = BoolField("merge_small_files")
+    merge_small_file_options = DictField("merge_small_file_options")
+
+    def get_columns(self):
+        return self.usecols
+
+    def set_pruned_columns(self, columns, *, keep_order=None):
+        self.usecols = columns
+        self.keep_usecols_order = keep_order
+
+    def __call__(
+        self, index_value=None, columns_value=None, dtypes=None, chunk_bytes=None
+    ):
+        self._output_types = [OutputType.dataframe]
+        shape = (np.nan, len(dtypes))
+        return self.new_dataframe(
+            None,
+            shape,
+            dtypes=dtypes,
+            index_value=index_value,
+            columns_value=columns_value,
+            chunk_bytes=chunk_bytes,
+        )
+
+
+def read_csv(
+    path,
+    names=None,
+    sep: str = ",",
+    index_col=None,
+    compression=None,
+    header="infer",
+    dtype=None,
+    usecols=None,
+    nrows=None,
+    chunk_bytes="64M",
+    gpu=None,
+    head_bytes="100k",
+    head_lines=None,
+    incremental_index: bool = True,
+    use_arrow_dtype: bool = None,
+    storage_options: dict = None,
+    memory_scale: int = None,
+    merge_small_files: bool = True,
+    merge_small_file_options: dict = None,
+    **kwargs,
+):
+    r"""
+    Read a comma-separated values (csv) file into DataFrame.
+    Also supports optionally iterating or breaking of the file
+    into chunks.
+
+    Parameters
+    ----------
+    path : str
+        Any valid string path is acceptable. The string could be a URL. Valid
+        URL schemes include http, ftp, s3, and file. For file URLs, a host is
+        expected. A local file could be: file://localhost/path/to/table.csv,
+        you can also read from external resources using a URL like:
+        hdfs://localhost:8020/test.csv.
+        If you want to pass in a path object, pandas accepts any ``os.PathLike``.
+        By file-like object, we refer to objects with a ``read()`` method, such as
+        a file handler (e.g. via builtin ``open`` function) or ``StringIO``.
+    sep : str, default ','
+        Delimiter to use. If sep is None, the C engine cannot automatically detect
+        the separator, but the Python parsing engine can, meaning the latter will
+        be used and automatically detect the separator by Python's builtin sniffer
+        tool, ``csv.Sniffer``. In addition, separators longer than 1 character and
+        different from ``'\s+'`` will be interpreted as regular expressions and
+        will also force the use of the Python parsing engine. Note that regex
+        delimiters are prone to ignoring quoted data. Regex example: ``'\r\t'``.
+    delimiter : str, default ``None``
+        Alias for sep.
+    header : int, list of int, default 'infer'
+        Row number(s) to use as the column names, and the start of the
+        data.  Default behavior is to infer the column names: if no names
+        are passed the behavior is identical to ``header=0`` and column
+        names are inferred from the first line of the file, if column
+        names are passed explicitly then the behavior is identical to
+        ``header=None``. Explicitly pass ``header=0`` to be able to
+        replace existing names. The header can be a list of integers that
+        specify row locations for a multi-index on the columns
+        e.g. [0,1,3]. Intervening rows that are not specified will be
+        skipped (e.g. 2 in this example is skipped). Note that this
+        parameter ignores commented lines and empty lines if
+        ``skip_blank_lines=True``, so ``header=0`` denotes the first line of
+        data rather than the first line of the file.
+    names : array-like, optional
+        List of column names to use. If the file contains a header row,
+        then you should explicitly pass ``header=0`` to override the column names.
+        Duplicates in this list are not allowed.
+    index_col : int, str, sequence of int / str, or False, default ``None``
+      Column(s) to use as the row labels of the ``DataFrame``, either given as
+      string name or column index. If a sequence of int / str is given, a
+      MultiIndex is used.
+      Note: ``index_col=False`` can be used to force pandas to *not* use the first
+      column as the index, e.g. when you have a malformed file with delimiters at
+      the end of each line.
+    usecols : list-like or callable, optional
+        Return a subset of the columns. If list-like, all elements must either
+        be positional (i.e. integer indices into the document columns) or strings
+        that correspond to column names provided either by the user in `names` or
+        inferred from the document header row(s). For example, a valid list-like
+        `usecols` parameter would be ``[0, 1, 2]`` or ``['foo', 'bar', 'baz']``.
+        Element order is ignored, so ``usecols=[0, 1]`` is the same as ``[1, 0]``.
+        To instantiate a DataFrame from ``data`` with element order preserved use
+        ``pd.read_csv(data, usecols=['foo', 'bar'])[['foo', 'bar']]`` for columns
+        in ``['foo', 'bar']`` order or
+        ``pd.read_csv(data, usecols=['foo', 'bar'])[['bar', 'foo']]``
+        for ``['bar', 'foo']`` order.
+        If callable, the callable function will be evaluated against the column
+        names, returning names where the callable function evaluates to True. An
+        example of a valid callable argument would be ``lambda x: x.upper() in
+        ['AAA', 'BBB', 'DDD']``. Using this parameter results in much faster
+        parsing time and lower memory usage.
+    squeeze : bool, default False
+        If the parsed data only contains one column then return a Series.
+    prefix : str, optional
+        Prefix to add to column numbers when no header, e.g. 'X' for X0, X1, ...
+    mangle_dupe_cols : bool, default True
+        Duplicate columns will be specified as 'X', 'X.1', ...'X.N', rather than
+        'X'...'X'. Passing in False will cause data to be overwritten if there
+        are duplicate names in the columns.
+    dtype : Type name or dict of column -> type, optional
+        Data type for data or columns. E.g. {'a': np.float64, 'b': np.int32,
+        'c': 'Int64'}
+        Use `str` or `object` together with suitable `na_values` settings
+        to preserve and not interpret dtype.
+        If converters are specified, they will be applied INSTEAD
+        of dtype conversion.
+    engine : {'c', 'python'}, optional
+        Parser engine to use. The C engine is faster while the python engine is
+        currently more feature-complete.
+    converters : dict, optional
+        Dict of functions for converting values in certain columns. Keys can either
+        be integers or column labels.
+    true_values : list, optional
+        Values to consider as True.
+    false_values : list, optional
+        Values to consider as False.
+    skipinitialspace : bool, default False
+        Skip spaces after delimiter.
+    skiprows : list-like, int or callable, optional
+        Line numbers to skip (0-indexed) or number of lines to skip (int)
+        at the start of the file.
+        If callable, the callable function will be evaluated against the row
+        indices, returning True if the row should be skipped and False otherwise.
+        An example of a valid callable argument would be ``lambda x: x in [0, 2]``.
+    skipfooter : int, default 0
+        Number of lines at bottom of file to skip (Unsupported with engine='c').
+    nrows : int, optional
+        Number of rows of file to read. Useful for reading pieces of large files.
+    na_values : scalar, str, list-like, or dict, optional
+        Additional strings to recognize as NA/NaN. If dict passed, specific
+        per-column NA values.  By default the following values are interpreted as
+        NaN: '', '#N/A', '#N/A N/A', '#NA', '-1.#IND', '-1.#QNAN', '-NaN', '-nan',
+        '1.#IND', '1.#QNAN', '<NA>', 'N/A', 'NA', 'NULL', 'NaN', 'n/a',
+        'nan', 'null'.
+    keep_default_na : bool, default True
+        Whether or not to include the default NaN values when parsing the data.
+        Depending on whether `na_values` is passed in, the behavior is as follows:
+        * If `keep_default_na` is True, and `na_values` are specified, `na_values`
+          is appended to the default NaN values used for parsing.
+        * If `keep_default_na` is True, and `na_values` are not specified, only
+          the default NaN values are used for parsing.
+        * If `keep_default_na` is False, and `na_values` are specified, only
+          the NaN values specified `na_values` are used for parsing.
+        * If `keep_default_na` is False, and `na_values` are not specified, no
+          strings will be parsed as NaN.
+        Note that if `na_filter` is passed in as False, the `keep_default_na` and
+        `na_values` parameters will be ignored.
+    na_filter : bool, default True
+        Detect missing value markers (empty strings and the value of na_values). In
+        data without any NAs, passing na_filter=False can improve the performance
+        of reading a large file.
+    verbose : bool, default False
+        Indicate number of NA values placed in non-numeric columns.
+    skip_blank_lines : bool, default True
+        If True, skip over blank lines rather than interpreting as NaN values.
+    parse_dates : bool or list of int or names or list of lists or dict, default False
+        The behavior is as follows:
+        * boolean. If True -> try parsing the index.
+        * list of int or names. e.g. If [1, 2, 3] -> try parsing columns 1, 2, 3
+          each as a separate date column.
+        * list of lists. e.g.  If [[1, 3]] -> combine columns 1 and 3 and parse as
+          a single date column.
+        * dict, e.g. {'foo' : [1, 3]} -> parse columns 1, 3 as date and call
+          result 'foo'
+        If a column or index cannot be represented as an array of datetimes,
+        say because of an unparsable value or a mixture of timezones, the column
+        or index will be returned unaltered as an object data type. For
+        non-standard datetime parsing, use ``pd.to_datetime`` after
+        ``pd.read_csv``. To parse an index or column with a mixture of timezones,
+        specify ``date_parser`` to be a partially-applied
+        :func:`pandas.to_datetime` with ``utc=True``. See
+        :ref:`io.csv.mixed_timezones` for more.
+        Note: A fast-path exists for iso8601-formatted dates.
+    infer_datetime_format : bool, default False
+        If True and `parse_dates` is enabled, pandas will attempt to infer the
+        format of the datetime strings in the columns, and if it can be inferred,
+        switch to a faster method of parsing them. In some cases this can increase
+        the parsing speed by 5-10x.
+    keep_date_col : bool, default False
+        If True and `parse_dates` specifies combining multiple columns then
+        keep the original columns.
+    date_parser : function, optional
+        Function to use for converting a sequence of string columns to an array of
+        datetime instances. The default uses ``dateutil.parser.parser`` to do the
+        conversion. Pandas will try to call `date_parser` in three different ways,
+        advancing to the next if an exception occurs: 1) Pass one or more arrays
+        (as defined by `parse_dates`) as arguments; 2) concatenate (row-wise) the
+        string values from the columns defined by `parse_dates` into a single array
+        and pass that; and 3) call `date_parser` once for each row using one or
+        more strings (corresponding to the columns defined by `parse_dates`) as
+        arguments.
+    dayfirst : bool, default False
+        DD/MM format dates, international and European format.
+    cache_dates : bool, default True
+        If True, use a cache of unique, converted dates to apply the datetime
+        conversion. May produce significant speed-up when parsing duplicate
+        date strings, especially ones with timezone offsets.
+        .. versionadded:: 0.25.0
+    iterator : bool, default False
+        Return TextFileReader object for iteration or getting chunks with
+        ``get_chunk()``.
+    chunksize : int, optional
+        Return TextFileReader object for iteration.
+        See the `IO Tools docs
+        <https://pandas.pydata.org/pandas-docs/stable/io.html#io-chunking>`_
+        for more information on ``iterator`` and ``chunksize``.
+    compression : {'infer', 'gzip', 'bz2', 'zip', 'xz', None}, default 'infer'
+        For on-the-fly decompression of on-disk data. If 'infer' and
+        `filepath_or_buffer` is path-like, then detect compression from the
+        following extensions: '.gz', '.bz2', '.zip', or '.xz' (otherwise no
+        decompression). If using 'zip', the ZIP file must contain only one data
+        file to be read in. Set to None for no decompression.
+    thousands : str, optional
+        Thousands separator.
+    decimal : str, default '.'
+        Character to recognize as decimal point (e.g. use ',' for European data).
+    lineterminator : str (length 1), optional
+        Character to break file into lines. Only valid with C parser.
+    quotechar : str (length 1), optional
+        The character used to denote the start and end of a quoted item. Quoted
+        items can include the delimiter and it will be ignored.
+    quoting : int or csv.QUOTE_* instance, default 0
+        Control field quoting behavior per ``csv.QUOTE_*`` constants. Use one of
+        QUOTE_MINIMAL (0), QUOTE_ALL (1), QUOTE_NONNUMERIC (2) or QUOTE_NONE (3).
+    doublequote : bool, default ``True``
+       When quotechar is specified and quoting is not ``QUOTE_NONE``, indicate
+       whether or not to interpret two consecutive quotechar elements INSIDE a
+       field as a single ``quotechar`` element.
+    escapechar : str (length 1), optional
+        One-character string used to escape other characters.
+    comment : str, optional
+        Indicates remainder of line should not be parsed. If found at the beginning
+        of a line, the line will be ignored altogether. This parameter must be a
+        single character. Like empty lines (as long as ``skip_blank_lines=True``),
+        fully commented lines are ignored by the parameter `header` but not by
+        `skiprows`. For example, if ``comment='#'``, parsing
+        ``#empty\na,b,c\n1,2,3`` with ``header=0`` will result in 'a,b,c' being
+        treated as the header.
+    encoding : str, optional
+        Encoding to use for UTF when reading/writing (ex. 'utf-8'). `List of Python
+        standard encodings
+        <https://docs.python.org/3/library/codecs.html#standard-encodings>`_ .
+    dialect : str or csv.Dialect, optional
+        If provided, this parameter will override values (default or not) for the
+        following parameters: `delimiter`, `doublequote`, `escapechar`,
+        `skipinitialspace`, `quotechar`, and `quoting`. If it is necessary to
+        override values, a ParserWarning will be issued. See csv.Dialect
+        documentation for more details.
+    error_bad_lines : bool, default True
+        Lines with too many fields (e.g. a csv line with too many commas) will by
+        default cause an exception to be raised, and no DataFrame will be returned.
+        If False, then these "bad lines" will dropped from the DataFrame that is
+        returned.
+    warn_bad_lines : bool, default True
+        If error_bad_lines is False, and warn_bad_lines is True, a warning for each
+        "bad line" will be output.
+    delim_whitespace : bool, default False
+        Specifies whether or not whitespace (e.g. ``' '`` or ``'    '``) will be
+        used as the sep. Equivalent to setting ``sep='\s+'``. If this option
+        is set to True, nothing should be passed in for the ``delimiter``
+        parameter.
+    low_memory : bool, default True
+        Internally process the file in chunks, resulting in lower memory use
+        while parsing, but possibly mixed type inference.  To ensure no mixed
+        types either set False, or specify the type with the `dtype` parameter.
+        Note that the entire file is read into a single DataFrame regardless,
+        use the `chunksize` or `iterator` parameter to return the data in chunks.
+        (Only valid with C parser).
+    float_precision : str, optional
+        Specifies which converter the C engine should use for floating-point
+        values. The options are `None` for the ordinary converter,
+        `high` for the high-precision converter, and `round_trip` for the
+        round-trip converter.
+    chunk_bytes: int, float or str, optional
+        Number of chunk bytes.
+    gpu: bool, default False
+        If read into cudf DataFrame.
+    head_bytes: int, float or str, optional
+        Number of bytes to use in the head of file, mainly for data inference.
+    head_lines: int, optional
+        Number of lines to use in the head of file, mainly for data inference.
+    incremental_index: bool, default True
+        If index_col not specified, ensure range index incremental,
+        gain a slightly better performance if setting False.
+    use_arrow_dtype: bool, default None
+        If True, use arrow dtype to store columns.
+    storage_options: dict, optional
+        Options for storage connection.
+    merge_small_files: bool, default True
+        Merge small files whose size is small.
+    merge_small_file_options: dict
+        Options for merging small files
+
+    Returns
+    -------
+    DataFrame
+        A comma-separated values (csv) file is returned as two-dimensional
+        data structure with labeled axes.
+
+    See Also
+    --------
+    to_csv : Write DataFrame to a comma-separated values (csv) file.
+
+    Examples
+    --------
+    >>> import maxframe.dataframe as md
+    >>> from maxframe.lib.filesystem.oss import build_oss_path
+    >>> md.read_csv('data.csv')  # doctest: +SKIP
+    >>> # read from HDFS
+    >>> md.read_csv('hdfs://localhost:8020/test.csv')  # doctest: +SKIP
+    >>> # read from OSS
+    >>> auth_path = build_oss_path(file_path, access_key_id, access_key_secret, end_point)
+    >>> md.read_csv(auth_path)
+    """
+    # infer dtypes and columns
+    if isinstance(path, (list, tuple)):
+        file_path = path[0]
+    elif get_fs(path, storage_options).isdir(path):
+        parsed_path = urlparse(path)
+        if parsed_path.scheme.lower() == "hdfs":
+            path_prefix = f"{parsed_path.scheme}://{parsed_path.netloc}"
+            file_path = path_prefix + get_fs(path, storage_options).ls(path)[0]
+        else:
+            file_path = glob(path.rstrip("/") + "/*", storage_options)[0]
+    else:
+        file_path = glob(path, storage_options)[0]
+
+    with open_file(
+        file_path, compression=compression, storage_options=storage_options
+    ) as f:
+        if head_lines is not None:
+            b = b"".join([f.readline() for _ in range(head_lines)])
+        else:
+            head_bytes = int(parse_readable_size(head_bytes)[0])
+            head_start, head_end = _find_chunk_start_end(f, 0, head_bytes)
+            f.seek(head_start)
+            b = f.read(head_end - head_start)
+        mini_df = pd.read_csv(
+            BytesIO(b),
+            sep=sep,
+            index_col=index_col,
+            dtype=dtype,
+            names=names,
+            header=header,
+        )
+        if header == "infer" and names is not None:
+            # ignore header as we always specify names
+            header = None
+        else:
+            # replace header if we specify names or header
+            header = 0
+        if names is None:
+            names = list(mini_df.columns)
+        if usecols:
+            usecols = usecols if isinstance(usecols, list) else [usecols]
+            col_index = sorted(mini_df.columns.get_indexer(usecols))
+            mini_df = mini_df.iloc[:, col_index]
+
+    if isinstance(mini_df.index, pd.RangeIndex):
+        index_value = parse_index(pd.RangeIndex(-1))
+    else:
+        index_value = parse_index(mini_df.index)
+    columns_value = parse_index(mini_df.columns, store_data=True)
+    if index_col and not isinstance(index_col, int):
+        index_col = list(mini_df.columns).index(index_col)
+    op = DataFrameReadCSV(
+        path=path,
+        names=names,
+        sep=sep,
+        header=header,
+        index_col=index_col,
+        usecols=usecols,
+        compression=compression,
+        gpu=gpu,
+        incremental_index=incremental_index,
+        use_arrow_dtype=use_arrow_dtype,
+        storage_options=storage_options,
+        memory_scale=memory_scale,
+        merge_small_files=merge_small_files,
+        merge_small_file_options=merge_small_file_options,
+        **kwargs,
+    )
+    chunk_bytes = chunk_bytes or options.chunk_store_limit
+    dtypes = mini_df.dtypes
+    if use_arrow_dtype is None:
+        use_arrow_dtype = options.dataframe.use_arrow_dtype
+    if not gpu and use_arrow_dtype:
+        dtypes = to_arrow_dtypes(dtypes, test_df=mini_df)
+    ret = op(
+        index_value=index_value,
+        columns_value=columns_value,
+        dtypes=dtypes,
+        chunk_bytes=chunk_bytes,
+    )
+    if nrows is not None:
+        return ret.head(nrows)
+    return ret