maxframe 0.1.0b5__cp37-cp37m-win_amd64.whl → 1.0.0__cp37-cp37m-win_amd64.whl

maxframe/io/odpsio/tableio.py

@@ -0,0 +1,719 @@
+# Copyright 1999-2024 Alibaba Group Holding Ltd.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import os
+import time
+from abc import ABC, abstractmethod
+from contextlib import contextmanager
+from typing import Dict, List, Optional, Union
+
+import numpy as np
+import pyarrow as pa
+from odps import ODPS
+from odps import __version__ as pyodps_version
+from odps.apis.storage_api import (
+    StorageApiArrowClient,
+    TableBatchScanResponse,
+    TableBatchWriteResponse,
+)
+from odps.tunnel import TableTunnel
+from odps.types import OdpsSchema, PartitionSpec, timestamp_ntz
+from odps.utils import call_with_retry
+
+try:
+    import pyarrow.compute as pac
+except ImportError:
+    pac = None
+
+from ...config import options
+from ...env import ODPS_STORAGE_API_ENDPOINT
+from ...lib.version import Version
+from ...utils import sync_pyodps_options
+from .schema import odps_schema_to_arrow_schema
+
+PartitionsType = Union[List[str], str, None]
+
+_DEFAULT_ROW_BATCH_SIZE = 4096
+_need_patch_batch = Version(pyodps_version) < Version("0.12.0")
+
+
+class ODPSTableIO(ABC):
+    def __new__(cls, odps: ODPS):
+        if cls is ODPSTableIO:
+            if options.use_common_table or ODPS_STORAGE_API_ENDPOINT in os.environ:
+                return HaloTableIO(odps)
+            else:
+                return TunnelTableIO(odps)
+        return super().__new__(cls)
+
+    def __init__(self, odps: ODPS):
+        self._odps = odps
+
+    @classmethod
+    def _get_reader_schema(
+        cls,
+        table_schema: OdpsSchema,
+        columns: Optional[List[str]] = None,
+        partition_columns: Union[None, bool, List[str]] = None,
+    ) -> OdpsSchema:
+        final_cols = []
+
+        columns = columns or [col.name for col in table_schema.simple_columns]
+        if partition_columns is True:
+            partition_columns = [c.name for c in table_schema.partitions]
+        else:
+            partition_columns = partition_columns or []
+
+        for col_name in columns + partition_columns:
+            final_cols.append(table_schema[col_name])
+        return OdpsSchema(final_cols)
+
+    @abstractmethod
+    def open_reader(
+        self,
+        full_table_name: str,
+        partitions: PartitionsType = None,
+        columns: Optional[List[str]] = None,
+        partition_columns: Union[None, bool, List[str]] = None,
+        start: Optional[int] = None,
+        stop: Optional[int] = None,
+        reverse_range: bool = False,
+        row_batch_size: int = _DEFAULT_ROW_BATCH_SIZE,
+    ):
+        raise NotImplementedError
+
+    @abstractmethod
+    def open_writer(
+        self,
+        full_table_name: str,
+        partition: Optional[str] = None,
+        overwrite: bool = True,
+    ):
+        raise NotImplementedError
+
+
+class TunnelMultiPartitionReader:
+    def __init__(
+        self,
+        odps_entry: ODPS,
+        table_name: str,
+        partitions: PartitionsType,
+        columns: Optional[List[str]] = None,
+        partition_columns: Optional[List[str]] = None,
+        start: Optional[int] = None,
+        count: Optional[int] = None,
+        partition_to_download_ids: Dict[str, str] = None,
+    ):
+        self._odps_entry = odps_entry
+        self._table = odps_entry.get_table(table_name)
+        self._columns = columns
+
+        odps_schema = ODPSTableIO._get_reader_schema(
+            self._table.table_schema, columns, partition_columns
+        )
+        self._schema = odps_schema_to_arrow_schema(odps_schema)
+
+        self._start = start or 0
+        self._count = count
+        self._row_left = count
+
+        self._cur_reader = None
+        self._reader_iter = None
+        self._cur_partition_id = -1
+        self._reader_start_pos = 0
+
+        if partitions is None:
+            if not self._table.table_schema.partitions:
+                self._partitions = [None]
+            else:
+                self._partitions = [str(pt) for pt in self._table.partitions]
+        elif isinstance(partitions, str):
+            self._partitions = [partitions]
+        else:
+            self._partitions = partitions
+
+        self._partition_cols = partition_columns
+        self._partition_to_download_ids = partition_to_download_ids or dict()
+
+    @property
+    def count(self) -> Optional[int]:
+        if len(self._partitions) > 1:
+            return None
+        return self._count
+
+    def _open_next_reader(self):
+        if self._cur_reader is not None:
+            self._reader_start_pos += self._cur_reader.count
+
+        if (
+            self._row_left is not None and self._row_left <= 0
+        ) or 1 + self._cur_partition_id >= len(self._partitions):
+            self._cur_reader = None
+            return
+
+        while 1 + self._cur_partition_id < len(self._partitions):
+            self._cur_partition_id += 1
+
+            part_str = self._partitions[self._cur_partition_id]
+
+            # todo make this more formal when PyODPS 0.12.0 is released
+            req_columns = self._columns
+            if not _need_patch_batch:
+                req_columns = self._schema.names
+            with sync_pyodps_options():
+                self._cur_reader = self._table.open_reader(
+                    part_str,
+                    columns=req_columns,
+                    arrow=True,
+                    download_id=self._partition_to_download_ids.get(part_str),
+                )
+            if self._cur_reader.count + self._reader_start_pos > self._start:
+                start = self._start - self._reader_start_pos
+                if self._count is None:
+                    count = None
+                else:
+                    count = min(self._count, self._cur_reader.count - start)
+
+                with sync_pyodps_options():
+                    self._reader_iter = self._cur_reader.read(start, count)
+                break
+            self._reader_start_pos += self._cur_reader.count
+        else:
+            self._cur_reader = None
+
+    def _fill_batch_partition(self, batch: pa.RecordBatch) -> pa.RecordBatch:
+        pt_spec = PartitionSpec(self._partitions[self._cur_partition_id])
+
+        names = list(batch.schema.names)
+        arrays = []
+        for idx in range(batch.num_columns):
+            col = batch.column(idx)
+            if isinstance(col.type, pa.TimestampType):
+                if col.type.tz is not None:
+                    target_type = pa.timestamp(
+                        self._schema.types[idx].unit, col.type.tz
+                    )
+                    arrays.append(col.cast(target_type))
+                else:
+                    target_type = pa.timestamp(
+                        self._schema.types[idx].unit, options.local_timezone
+                    )
+                    pd_col = col.to_pandas().dt.tz_localize(options.local_timezone)
+                    arrays.append(pa.Array.from_pandas(pd_col).cast(target_type))
+            else:
+                arrays.append(batch.column(idx))
+
+        for part_col in self._partition_cols or []:
+            names.append(part_col)
+            col_type = self._schema.field_by_name(part_col).type
+            pt_col = np.repeat([pt_spec[part_col]], batch.num_rows)
+            arrays.append(pa.array(pt_col).cast(col_type))
+        return pa.RecordBatch.from_arrays(arrays, names)
+
+    def read(self):
+        with sync_pyodps_options():
+            if self._cur_reader is None:
+                self._open_next_reader()
+                if self._cur_reader is None:
+                    return None
+            while self._cur_reader is not None:
+                try:
+                    batch = next(self._reader_iter)
+                    if batch is not None:
+                        if self._row_left is not None:
+                            self._row_left -= batch.num_rows
+                        if _need_patch_batch:
+                            return self._fill_batch_partition(batch)
+                        else:
+                            return batch
+                except StopIteration:
+                    self._open_next_reader()
+            return None
+
+    def read_all(self) -> pa.Table:
+        batches = []
+        while True:
+            batch = self.read()
+            if batch is None:
+                break
+            batches.append(batch)
+        if not batches:
+            return self._schema.empty_table()
+        return pa.Table.from_batches(batches)
+
+
+class TunnelWrappedWriter:
+    def __init__(self, nested_writer):
+        self._writer = nested_writer
+
+    def write(self, data: Union[pa.RecordBatch, pa.Table]):
+        if not any(isinstance(tp, pa.TimestampType) for tp in data.schema.types):
+            self._writer.write(data)
+            return
+        pa_type = type(data)
+        arrays = []
+        for idx in range(data.num_columns):
+            name = data.schema.names[idx]
+            col = data.column(idx)
+            if not isinstance(col.type, pa.TimestampType):
+                arrays.append(col)
+                continue
+            if self._writer.schema[name].type == timestamp_ntz:
+                col = HaloTableArrowWriter._localize_timezone(col, "UTC")
+            else:
+                col = HaloTableArrowWriter._localize_timezone(col)
+            arrays.append(col)
+        data = pa_type.from_arrays(arrays, names=data.schema.names)
+        self._writer.write(data)
+
+    def __getattr__(self, item):
+        return getattr(self._writer, item)
+
+
+class TunnelTableIO(ODPSTableIO):
+    @contextmanager
+    def open_reader(
+        self,
+        full_table_name: str,
+        partitions: PartitionsType = None,
+        columns: Optional[List[str]] = None,
+        partition_columns: Union[None, bool, List[str]] = None,
+        start: Optional[int] = None,
+        stop: Optional[int] = None,
+        reverse_range: bool = False,
+        row_batch_size: int = _DEFAULT_ROW_BATCH_SIZE,
+    ):
+        with sync_pyodps_options():
+            table = self._odps.get_table(full_table_name)
+
+        if partition_columns is True:
+            partition_columns = [c.name for c in table.table_schema.partitions]
+
+        total_records = None
+        part_to_down_id = None
+        if (
+            (start is not None and start < 0)
+            or (stop is not None and stop < 0)
+            or (reverse_range and start is None)
+        ):
+            with sync_pyodps_options():
+                table = self._odps.get_table(full_table_name)
+                tunnel = TableTunnel(self._odps)
+                parts = (
+                    [partitions]
+                    if partitions is None or isinstance(partitions, str)
+                    else partitions
+                )
+                part_to_down_id = dict()
+                total_records = 0
+                for part in parts:
+                    down_session = tunnel.create_download_session(
+                        table, async_mode=True, partition_spec=part
+                    )
+                    part_to_down_id[part] = down_session.id
+                    total_records += down_session.count
+
+        count = None
+        if start is not None or stop is not None:
+            if reverse_range:
+                start = start if start is not None else total_records - 1
+                stop = stop if stop is not None else -1
+            else:
+                start = start if start is not None else 0
+                stop = stop if stop is not None else None
+            start = start if start >= 0 else total_records + start
+            stop = stop if stop is None or stop >= 0 else total_records + stop
+            if reverse_range:
+                count = start - stop
+                start = stop + 1
+            else:
+                count = stop - start if stop is not None and start is not None else None
+
+        yield TunnelMultiPartitionReader(
+            self._odps,
+            full_table_name,
+            partitions=partitions,
+            columns=columns,
+            partition_columns=partition_columns,
+            start=start,
+            count=count,
+            partition_to_download_ids=part_to_down_id,
+        )
+
+    @contextmanager
+    def open_writer(
+        self,
+        full_table_name: str,
+        partition: Optional[str] = None,
+        overwrite: bool = True,
+    ):
+        table = self._odps.get_table(full_table_name)
+        with sync_pyodps_options():
+            with table.open_writer(
+                partition=partition,
+                arrow=True,
+                create_partition=partition is not None,
+                overwrite=overwrite,
+            ) as writer:
+                # fixme should yield writer directly once pyodps fixes
+                #  related arrow timestamp bug when provided schema and
+                #  table schema is identical.
+                if _need_patch_batch:
+                    yield TunnelWrappedWriter(writer)
+                else:
+                    yield writer
+
+
+class HaloTableArrowReader:
+    def __init__(
+        self,
+        client: StorageApiArrowClient,
+        scan_info: TableBatchScanResponse,
+        odps_schema: OdpsSchema,
+        start: Optional[int] = None,
+        count: Optional[int] = None,
+        row_batch_size: Optional[int] = None,
+    ):
+        self._client = client
+        self._scan_info = scan_info
+
+        self._cur_split_id = -1
+        self._cur_reader = None
+
+        self._odps_schema = odps_schema
+        self._arrow_schema = odps_schema_to_arrow_schema(odps_schema)
+
+        self._start = start
+        self._count = count
+        self._cursor = 0
+        self._row_batch_size = row_batch_size
+
+    @property
+    def count(self) -> int:
+        return self._count
+
+    def _open_next_reader(self):
+        from odps.apis.storage_api import ReadRowsRequest
+
+        if 0 <= self._scan_info.split_count <= self._cur_split_id + 1:
+            # scan by split
+            self._cur_reader = None
+            return
+        elif self._count is not None and self._cursor >= self._count:
+            # scan by range
+            self._cur_reader = None
+            return
+
+        read_rows_kw = {}
+        if self._start is not None:
+            read_rows_kw["row_index"] = self._start + self._cursor
+            read_rows_kw["row_count"] = min(
+                self._row_batch_size, self._count - self._cursor
+            )
+            self._cursor = min(self._count, self._cursor + self._row_batch_size)
+
+        req = ReadRowsRequest(
+            session_id=self._scan_info.session_id,
+            split_index=self._cur_split_id + 1,
+            **read_rows_kw,
+        )
+        self._cur_reader = call_with_retry(self._client.read_rows_arrow, req)
+        self._cur_split_id += 1
+
+    def _convert_timezone(self, batch: pa.RecordBatch) -> pa.RecordBatch:
+        timezone = options.local_timezone
+        if not any(isinstance(tp, pa.TimestampType) for tp in batch.schema.types):
+            return batch
+
+        cols = []
+        for idx in range(batch.num_columns):
+            col = batch.column(idx)
+            name = batch.schema.names[idx]
+            if not isinstance(col.type, pa.TimestampType):
+                cols.append(col)
+                continue
+            if self._odps_schema[name].type == timestamp_ntz:
+                col = col.cast(pa.timestamp(col.type.unit))
+                cols.append(col)
+                continue
+
+            if hasattr(pac, "local_timestamp"):
+                col = col.cast(pa.timestamp(col.type.unit, timezone))
+            else:
+                pd_col = col.to_pandas().dt.tz_convert(timezone)
+                col = pa.Array.from_pandas(pd_col).cast(
+                    pa.timestamp(col.type.unit, timezone)
+                )
+            cols.append(col)
+
+        return pa.RecordBatch.from_arrays(cols, names=batch.schema.names)
+
+    def read(self):
+        if self._cur_reader is None:
+            self._open_next_reader()
+            if self._cur_reader is None:
+                return None
+        while self._cur_reader is not None:
+            batch = self._cur_reader.read()
+            if batch is not None:
+                return self._convert_timezone(batch)
+            self._open_next_reader()
+        return None
+
+    def read_all(self) -> pa.Table:
+        batches = []
+        while True:
+            batch = self.read()
+            if batch is None:
+                break
+            batches.append(batch)
+        if not batches:
+            return self._arrow_schema.empty_table()
+        return pa.Table.from_batches(batches)
+
+
+class HaloTableArrowWriter:
+    def __init__(
+        self,
+        client: StorageApiArrowClient,
+        write_info: TableBatchWriteResponse,
+        odps_schema: OdpsSchema,
+    ):
+        self._client = client
+        self._write_info = write_info
+        self._odps_schema = odps_schema
+        self._arrow_schema = odps_schema_to_arrow_schema(odps_schema)
+
+        self._writer = None
+
+    def open(self):
+        from odps.apis.storage_api import WriteRowsRequest
+
+        self._writer = call_with_retry(
+            self._client.write_rows_arrow,
+            WriteRowsRequest(self._write_info.session_id),
+        )
+
+    @classmethod
+    def _localize_timezone(cls, col, tz=None):
+        from odps.lib import tzlocal
+
+        if tz is None:
+            if options.local_timezone is None:
+                tz = str(tzlocal.get_localzone())
+            else:
+                tz = str(options.local_timezone)
+
+        if col.type.tz is not None:
+            return col
+        if hasattr(pac, "assume_timezone"):
+            col = pac.assume_timezone(col, tz)
+            return col
+        else:
+            col = col.to_pandas()
+            return pa.Array.from_pandas(col.dt.tz_localize(tz))
+
+    def _convert_schema(self, batch: pa.RecordBatch):
+        if batch.schema == self._arrow_schema and not any(
+            isinstance(tp, pa.TimestampType) for tp in self._arrow_schema.types
+        ):
+            return batch
+        cols = []
+        for idx in range(batch.num_columns):
+            col = batch.column(idx)
+            name = batch.schema.names[idx]
+
+            if isinstance(col.type, pa.TimestampType):
+                if self._odps_schema[name].type == timestamp_ntz:
+                    col = self._localize_timezone(col, "UTC")
+                else:
+                    col = self._localize_timezone(col)
+
+            if col.type != self._arrow_schema.types[idx]:
+                col = col.cast(self._arrow_schema.types[idx])
+            cols.append(col)
+        return pa.RecordBatch.from_arrays(cols, names=batch.schema.names)
+
+    def write(self, batch):
+        if isinstance(batch, pa.Table):
+            for b in batch.to_batches():
+                self._writer.write(self._convert_schema(b))
+        else:
+            self._writer.write(self._convert_schema(batch))
+
+    def close(self):
+        commit_msg, is_success = self._writer.finish()
+        if not is_success:
+            raise IOError(commit_msg)
+        return commit_msg
+
+
+class HaloTableIO(ODPSTableIO):
+    _storage_api_endpoint = os.getenv(ODPS_STORAGE_API_ENDPOINT)
+
+    @staticmethod
+    def _convert_partitions(partitions: PartitionsType) -> Optional[List[str]]:
+        if partitions is None:
+            return []
+        elif isinstance(partitions, (str, PartitionSpec)):
+            partitions = [partitions]
+        return [
+            "/".join(f"{k}={v}" for k, v in PartitionSpec(pt).items())
+            for pt in partitions
+        ]
+
+    def get_table_record_count(
+        self, full_table_name: str, partitions: PartitionsType = None
+    ):
+        from odps.apis.storage_api import SplitOptions, TableBatchScanRequest
+
+        table = self._odps.get_table(full_table_name)
+        client = StorageApiArrowClient(
+            self._odps, table, rest_endpoint=self._storage_api_endpoint
+        )
+
+        split_option = SplitOptions.SplitMode.SIZE
+
+        scan_kw = {
+            "required_partitions": self._convert_partitions(partitions),
+            "split_options": SplitOptions.get_default_options(split_option),
+        }
+
+        # todo add more options for partition column handling
+        req = TableBatchScanRequest(**scan_kw)
+        resp = client.create_read_session(req)
+        return resp.record_count
+
+    @contextmanager
+    def open_reader(
+        self,
+        full_table_name: str,
+        partitions: PartitionsType = None,
+        columns: Optional[List[str]] = None,
+        partition_columns: Union[None, bool, List[str]] = None,
+        start: Optional[int] = None,
+        stop: Optional[int] = None,
+        reverse_range: bool = False,
+        row_batch_size: int = _DEFAULT_ROW_BATCH_SIZE,
+    ):
+        from odps.apis.storage_api import (
+            SessionRequest,
+            SessionStatus,
+            SplitOptions,
+            TableBatchScanRequest,
+        )
+
+        table = self._odps.get_table(full_table_name)
+        client = StorageApiArrowClient(
+            self._odps, table, rest_endpoint=self._storage_api_endpoint
+        )
+
+        split_option = SplitOptions.SplitMode.SIZE
+        if start is not None or stop is not None:
+            split_option = SplitOptions.SplitMode.ROW_OFFSET
+
+        scan_kw = {
+            "required_partitions": self._convert_partitions(partitions),
+            "split_options": SplitOptions.get_default_options(split_option),
+        }
+        columns = columns or [c.name for c in table.table_schema.simple_columns]
+        scan_kw["required_data_columns"] = columns
+        if partition_columns is True:
+            scan_kw["required_partition_columns"] = [
+                c.name for c in table.table_schema.partitions
+            ]
+        else:
+            scan_kw["required_partition_columns"] = partition_columns
+
+        # todo add more options for partition column handling
+        req = TableBatchScanRequest(**scan_kw)
+        resp = call_with_retry(client.create_read_session, req)
+
+        session_id = resp.session_id
+        status = resp.session_status
+        while status == SessionStatus.INIT:
+            resp = call_with_retry(client.get_read_session, SessionRequest(session_id))
+            status = resp.session_status
+            time.sleep(1.0)
+
+        assert status == SessionStatus.NORMAL
+
+        count = None
+        if start is not None or stop is not None:
+            if reverse_range:
+                start = start if start is not None else resp.record_count - 1
+                stop = stop if stop is not None else -1
+            else:
+                start = start if start is not None else 0
+                stop = stop if stop is not None else resp.record_count
+            start = start if start >= 0 else resp.record_count + start
+            stop = stop if stop >= 0 else resp.record_count + stop
+            if reverse_range:
+                count = start - stop
+                start = stop + 1
+            else:
+                count = stop - start
+
+        reader_schema = self._get_reader_schema(
+            table.table_schema, columns, partition_columns
+        )
+        yield HaloTableArrowReader(
+            client,
+            resp,
+            odps_schema=reader_schema,
+            start=start,
+            count=count,
+            row_batch_size=row_batch_size,
+        )
+
+    @contextmanager
+    def open_writer(
+        self,
+        full_table_name: str,
+        partition: Optional[str] = None,
+        overwrite: bool = True,
+    ):
+        from odps.apis.storage_api import (
+            SessionRequest,
+            SessionStatus,
+            TableBatchWriteRequest,
+        )
+
+        table = self._odps.get_table(full_table_name)
+        client = StorageApiArrowClient(
+            self._odps, table, rest_endpoint=self._storage_api_endpoint
+        )
+
+        part_strs = self._convert_partitions(partition)
+        part_str = part_strs[0] if part_strs else None
+        req = TableBatchWriteRequest(partition_spec=part_str, overwrite=overwrite)
+        resp = call_with_retry(client.create_write_session, req)
+
+        session_id = resp.session_id
+        writer = HaloTableArrowWriter(client, resp, table.table_schema)
+        writer.open()
+
+        yield writer
+
+        commit_msg = writer.close()
+        resp = call_with_retry(
+            client.commit_write_session,
+            SessionRequest(session_id=session_id),
+            [commit_msg],
+        )
+        while resp.session_status == SessionStatus.COMMITTING:
+            resp = call_with_retry(
+                client.get_write_session, SessionRequest(session_id=session_id)
+            )
+        assert resp.session_status == SessionStatus.COMMITTED