mat3ra-esse 2025.8.9.post0__py3-none-any.whl → 2025.8.20.post0__py3-none-any.whl

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  1. mat3ra/esse/data/examples.py +1 -1
  2. mat3ra/esse/data/schemas.py +1 -1
  3. mat3ra/esse/models/core/reference/__init__.py +5 -5
  4. mat3ra/esse/models/core/reference/experiment/__init__.py +2 -2
  5. mat3ra/esse/models/job/__init__.py +21 -21
  6. mat3ra/esse/models/material/__init__.py +8 -8
  7. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.py +17 -17
  8. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.py +17 -17
  9. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.py +8 -8
  10. mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +8 -8
  11. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanoribbon.py +26 -26
  12. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanotape.py +17 -17
  13. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +17 -17
  14. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.py +17 -17
  15. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.py +8 -8
  16. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_region.py +8 -8
  17. mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +8 -8
  18. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +8 -8
  19. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +8 -8
  20. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +8 -8
  21. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.py +26 -26
  22. mat3ra/esse/models/materials_category_components/operations/core/modifications/perturb.py +8 -8
  23. mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +26 -26
  24. mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
  25. mat3ra/esse/models/property/meta.py +2 -2
  26. mat3ra/esse/models/property/raw.py +2 -2
  27. mat3ra/esse/models/property/source.py +2 -2
  28. mat3ra/esse/models/software/template.py +2 -1
  29. mat3ra/esse/models/software_directory/modeling/unit/execution.py +1 -1
  30. mat3ra/esse/models/software_directory/scripting/unit/execution.py +1 -1
  31. mat3ra/esse/models/workflow/__init__.py +19 -19
  32. mat3ra/esse/models/workflow/subworkflow/__init__.py +6 -6
  33. mat3ra/esse/models/workflow/subworkflow/unit.py +6 -6
  34. mat3ra/esse/models/workflow/unit/__init__.py +8 -8
  35. mat3ra/esse/models/workflow/unit/input/_input.py +1 -1
  36. mat3ra/esse/models/workflow/unit/input/_inputItem.py +3 -1
  37. {mat3ra_esse-2025.8.9.post0.dist-info → mat3ra_esse-2025.8.20.post0.dist-info}/METADATA +1 -1
  38. {mat3ra_esse-2025.8.9.post0.dist-info → mat3ra_esse-2025.8.20.post0.dist-info}/RECORD +41 -56
  39. mat3ra/esse/models/software_directory/ml/__init__.py +0 -3
  40. mat3ra/esse/models/software_directory/ml/exabyteml.py +0 -28
  41. mat3ra/esse/models/software_directory/ml/unit/__init__.py +0 -3
  42. mat3ra/esse/models/software_directory/ml/unit/execution/__init__.py +0 -879
  43. mat3ra/esse/models/software_directory/ml/unit/execution/evaluate/__init__.py +0 -3
  44. mat3ra/esse/models/software_directory/ml/unit/execution/evaluate/cross_validate.py +0 -293
  45. mat3ra/esse/models/software_directory/ml/unit/execution/initialize.py +0 -293
  46. mat3ra/esse/models/software_directory/ml/unit/execution/score.py +0 -286
  47. mat3ra/esse/models/software_directory/ml/unit/execution/train.py +0 -297
  48. mat3ra/esse/models/software_directory/ml/unit/processing/__init__.py +0 -276
  49. mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/__init__.py +0 -167
  50. mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/manipulation.py +0 -144
  51. mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.py +0 -163
  52. mat3ra/esse/models/software_directory/ml/unit/processing/feature_selection/__init__.py +0 -148
  53. mat3ra/esse/models/software_directory/ml/unit/processing/feature_selection/filter_based.py +0 -144
  54. {mat3ra_esse-2025.8.9.post0.dist-info → mat3ra_esse-2025.8.20.post0.dist-info}/WHEEL +0 -0
  55. {mat3ra_esse-2025.8.9.post0.dist-info → mat3ra_esse-2025.8.20.post0.dist-info}/licenses/LICENSE.md +0 -0
  56. {mat3ra_esse-2025.8.9.post0.dist-info → mat3ra_esse-2025.8.20.post0.dist-info}/top_level.txt +0 -0
@@ -419,7 +419,7 @@ class VolumeSchema(BaseModel):
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  value: float
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- class Name605(Enum):
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+ class Name604(Enum):
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  density = "density"
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@@ -442,7 +442,7 @@ class ScalarSchema(BaseModel):
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  value: float
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- class Name606(Enum):
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+ class Name605(Enum):
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  symmetry = "symmetry"
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@@ -462,7 +462,7 @@ class SymmetrySchema(BaseModel):
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  name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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- class Name607(Enum):
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+ class Name606(Enum):
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  elemental_ratio = "elemental_ratio"
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@@ -475,7 +475,7 @@ class ElementalRatio(BaseModel):
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  """
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- class Name608(Enum):
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+ class Name607(Enum):
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  p_norm = "p-norm"
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@@ -488,7 +488,7 @@ class PNorm(BaseModel):
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  value: float
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- class Name609(Enum):
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+ class Name608(Enum):
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  inchi = "inchi"
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@@ -497,7 +497,7 @@ class InChIRepresentationSchema(BaseModel):
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  value: str
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- class Name610(Enum):
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+ class Name609(Enum):
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  inchi_key = "inchi_key"
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@@ -576,7 +576,7 @@ class FileSourceSchema(BaseModel):
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  """
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579
- class Name611(Enum):
579
+ class Name610(Enum):
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  default = "default"
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  atomsTooClose = "atomsTooClose"
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  atomsOverlap = "atomsOverlap"
@@ -589,7 +589,7 @@ class Severity(Enum):
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591
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  class MaterialConsistencyCheckSchema(BaseModel):
592
- name: Name611
592
+ name: Name610
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  """
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  Name of the consistency check that is performed, which is listed in an enum.
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  """
@@ -895,7 +895,7 @@ class LatticeSchema70(BaseModel):
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  )
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- class Name612(Enum):
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+ class Name611(Enum):
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  volume = "volume"
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@@ -909,7 +909,7 @@ class VolumeSchema70(BaseModel):
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  value: float
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- class Name613(Enum):
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+ class Name612(Enum):
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  density = "density"
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@@ -932,7 +932,7 @@ class ScalarSchema72(BaseModel):
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  value: float
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935
- class Name614(Enum):
935
+ class Name613(Enum):
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  symmetry = "symmetry"
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@@ -952,7 +952,7 @@ class SymmetrySchema70(BaseModel):
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  name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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- class Name615(Enum):
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+ class Name614(Enum):
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  elemental_ratio = "elemental_ratio"
957
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@@ -965,7 +965,7 @@ class ElementalRatio71(BaseModel):
965
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  """
966
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968
- class Name616(Enum):
968
+ class Name615(Enum):
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  p_norm = "p-norm"
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@@ -978,7 +978,7 @@ class PNorm71(BaseModel):
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  value: float
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981
- class Name617(Enum):
981
+ class Name616(Enum):
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  inchi = "inchi"
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@@ -987,7 +987,7 @@ class InChIRepresentationSchema71(BaseModel):
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  value: str
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989
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990
- class Name618(Enum):
990
+ class Name617(Enum):
991
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  inchi_key = "inchi_key"
992
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993
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@@ -1020,14 +1020,14 @@ class DerivedPropertiesSchema71(
1020
1020
  ] = Field(..., discriminator="name")
1021
1021
 
1022
1022
 
1023
- class Name619(Enum):
1023
+ class Name618(Enum):
1024
1024
  default = "default"
1025
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  atomsTooClose = "atomsTooClose"
1026
1026
  atomsOverlap = "atomsOverlap"
1027
1027
 
1028
1028
 
1029
1029
  class MaterialConsistencyCheckSchema70(BaseModel):
1030
- name: Name619
1030
+ name: Name618
1031
1031
  """
1032
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  Name of the consistency check that is performed, which is listed in an enum.
1033
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  """
@@ -1344,7 +1344,7 @@ class LatticeSchema71(BaseModel):
1344
1344
  )
1345
1345
 
1346
1346
 
1347
- class Name620(Enum):
1347
+ class Name619(Enum):
1348
1348
  volume = "volume"
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@@ -1358,7 +1358,7 @@ class VolumeSchema71(BaseModel):
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  value: float
1359
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1360
1360
 
1361
- class Name621(Enum):
1361
+ class Name620(Enum):
1362
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  density = "density"
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@@ -1381,7 +1381,7 @@ class ScalarSchema73(BaseModel):
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  value: float
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1384
- class Name622(Enum):
1384
+ class Name621(Enum):
1385
1385
  symmetry = "symmetry"
1386
1386
 
1387
1387
 
@@ -1401,7 +1401,7 @@ class SymmetrySchema71(BaseModel):
1401
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  name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
1402
1402
 
1403
1403
 
1404
- class Name623(Enum):
1404
+ class Name622(Enum):
1405
1405
  elemental_ratio = "elemental_ratio"
1406
1406
 
1407
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@@ -1414,7 +1414,7 @@ class ElementalRatio72(BaseModel):
1414
1414
  """
1415
1415
 
1416
1416
 
1417
- class Name624(Enum):
1417
+ class Name623(Enum):
1418
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  p_norm = "p-norm"
1419
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1420
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@@ -1427,7 +1427,7 @@ class PNorm72(BaseModel):
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  value: float
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- class Name625(Enum):
1430
+ class Name624(Enum):
1431
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  inchi = "inchi"
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@@ -1436,7 +1436,7 @@ class InChIRepresentationSchema72(BaseModel):
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  value: str
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1438
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1439
- class Name626(Enum):
1439
+ class Name625(Enum):
1440
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  inchi_key = "inchi_key"
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1442
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@@ -1469,14 +1469,14 @@ class DerivedPropertiesSchema72(
1469
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  ] = Field(..., discriminator="name")
1470
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1471
1471
 
1472
- class Name627(Enum):
1472
+ class Name626(Enum):
1473
1473
  default = "default"
1474
1474
  atomsTooClose = "atomsTooClose"
1475
1475
  atomsOverlap = "atomsOverlap"
1476
1476
 
1477
1477
 
1478
1478
  class MaterialConsistencyCheckSchema71(BaseModel):
1479
- name: Name627
1479
+ name: Name626
1480
1480
  """
1481
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  Name of the consistency check that is performed, which is listed in an enum.
1482
1482
  """
@@ -285,7 +285,7 @@ class VolumeSchema(BaseModel):
285
285
  value: float
286
286
 
287
287
 
288
- class Name563(Enum):
288
+ class Name562(Enum):
289
289
  density = "density"
290
290
 
291
291
 
@@ -308,7 +308,7 @@ class ScalarSchema(BaseModel):
308
308
  value: float
309
309
 
310
310
 
311
- class Name564(Enum):
311
+ class Name563(Enum):
312
312
  symmetry = "symmetry"
313
313
 
314
314
 
@@ -328,7 +328,7 @@ class SymmetrySchema(BaseModel):
328
328
  name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
329
329
 
330
330
 
331
- class Name565(Enum):
331
+ class Name564(Enum):
332
332
  elemental_ratio = "elemental_ratio"
333
333
 
334
334
 
@@ -341,7 +341,7 @@ class ElementalRatio(BaseModel):
341
341
  """
342
342
 
343
343
 
344
- class Name566(Enum):
344
+ class Name565(Enum):
345
345
  p_norm = "p-norm"
346
346
 
347
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@@ -354,7 +354,7 @@ class PNorm(BaseModel):
354
354
  value: float
355
355
 
356
356
 
357
- class Name567(Enum):
357
+ class Name566(Enum):
358
358
  inchi = "inchi"
359
359
 
360
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@@ -363,7 +363,7 @@ class InChIRepresentationSchema(BaseModel):
363
363
  value: str
364
364
 
365
365
 
366
- class Name568(Enum):
366
+ class Name567(Enum):
367
367
  inchi_key = "inchi_key"
368
368
 
369
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@@ -442,7 +442,7 @@ class FileSourceSchema(BaseModel):
442
442
  """
443
443
 
444
444
 
445
- class Name569(Enum):
445
+ class Name568(Enum):
446
446
  default = "default"
447
447
  atomsTooClose = "atomsTooClose"
448
448
  atomsOverlap = "atomsOverlap"
@@ -455,7 +455,7 @@ class Severity(Enum):
455
455
 
456
456
 
457
457
  class MaterialConsistencyCheckSchema(BaseModel):
458
- name: Name569
458
+ name: Name568
459
459
  """
460
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  Name of the consistency check that is performed, which is listed in an enum.
461
461
  """
@@ -19,115 +19,115 @@ class ScalarSchema(BaseModel):
19
19
  value: float
20
20
 
21
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22
- class Name690(Enum):
22
+ class Name689(Enum):
23
23
  harris_foulkes = "harris_foulkes"
24
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25
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26
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  class ScalarSchema83(BaseModel):
27
- name: Optional[Name690] = None
27
+ name: Optional[Name689] = None
28
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  value: float
29
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30
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31
- class Name691(Enum):
31
+ class Name690(Enum):
32
32
  one_electron = "one_electron"
33
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34
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35
35
  class ScalarSchema84(BaseModel):
36
- name: Optional[Name691] = None
36
+ name: Optional[Name690] = None
37
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  value: float
38
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39
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40
- class Name692(Enum):
40
+ class Name691(Enum):
41
41
  hartree = "hartree"
42
42
 
43
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44
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  class ScalarSchema85(BaseModel):
45
- name: Optional[Name692] = None
45
+ name: Optional[Name691] = None
46
46
  value: float
47
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48
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49
- class Name693(Enum):
49
+ class Name692(Enum):
50
50
  exchange = "exchange"
51
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52
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53
53
  class ScalarSchema86(BaseModel):
54
- name: Optional[Name693] = None
54
+ name: Optional[Name692] = None
55
55
  value: float
56
56
 
57
57
 
58
- class Name694(Enum):
58
+ class Name693(Enum):
59
59
  exchange_correlation = "exchange_correlation"
60
60
 
61
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62
62
  class ScalarSchema87(BaseModel):
63
- name: Optional[Name694] = None
63
+ name: Optional[Name693] = None
64
64
  value: float
65
65
 
66
66
 
67
- class Name695(Enum):
67
+ class Name694(Enum):
68
68
  ewald = "ewald"
69
69
 
70
70
 
71
71
  class ScalarSchema88(BaseModel):
72
- name: Optional[Name695] = None
72
+ name: Optional[Name694] = None
73
73
  value: float
74
74
 
75
75
 
76
- class Name696(Enum):
76
+ class Name695(Enum):
77
77
  alphaZ = "alphaZ"
78
78
 
79
79
 
80
80
  class ScalarSchema89(BaseModel):
81
- name: Optional[Name696] = None
81
+ name: Optional[Name695] = None
82
82
  value: float
83
83
 
84
84
 
85
- class Name697(Enum):
85
+ class Name696(Enum):
86
86
  atomic_energy = "atomic_energy"
87
87
 
88
88
 
89
89
  class ScalarSchema90(BaseModel):
90
- name: Optional[Name697] = None
90
+ name: Optional[Name696] = None
91
91
  value: float
92
92
 
93
93
 
94
- class Name698(Enum):
94
+ class Name697(Enum):
95
95
  eigenvalues = "eigenvalues"
96
96
 
97
97
 
98
98
  class ScalarSchema91(BaseModel):
99
- name: Optional[Name698] = None
99
+ name: Optional[Name697] = None
100
100
  value: float
101
101
 
102
102
 
103
- class Name699(Enum):
103
+ class Name698(Enum):
104
104
  PAW_double_counting_correction_2 = "PAW_double-counting_correction_2"
105
105
 
106
106
 
107
107
  class ScalarSchema92(BaseModel):
108
- name: Optional[Name699] = None
108
+ name: Optional[Name698] = None
109
109
  value: float
110
110
 
111
111
 
112
- class Name700(Enum):
112
+ class Name699(Enum):
113
113
  PAW_double_counting_correction_3 = "PAW_double-counting_correction_3"
114
114
 
115
115
 
116
116
  class ScalarSchema93(BaseModel):
117
- name: Optional[Name700] = None
117
+ name: Optional[Name699] = None
118
118
  value: float
119
119
 
120
120
 
121
- class Name701(Enum):
121
+ class Name700(Enum):
122
122
  hartree_fock = "hartree_fock"
123
123
 
124
124
 
125
125
  class ScalarSchema94(BaseModel):
126
- name: Optional[Name701] = None
126
+ name: Optional[Name700] = None
127
127
  value: float
128
128
 
129
129
 
130
- class Name702(Enum):
130
+ class Name701(Enum):
131
131
  total_energy_contributions = "total_energy_contributions"
132
132
 
133
133
 
@@ -194,5 +194,5 @@ class TotalEnergyContributionsSchema(BaseModel):
194
194
  """
195
195
  hartree-fock contribution
196
196
  """
197
- name: Optional[Name702] = None
197
+ name: Optional[Name701] = None
198
198
  units: Optional[Units] = None
@@ -37,12 +37,12 @@ class FunctionalGroupPatternSchema(BaseModel):
37
37
  """
38
38
 
39
39
 
40
- class Name518(Enum):
40
+ class Name517(Enum):
41
41
  ring = "ring"
42
42
 
43
43
 
44
44
  class RingPatternSchema(BaseModel):
45
- name: Optional[Name518] = None
45
+ name: Optional[Name517] = None
46
46
  atoms: Optional[List[ObjectWithId]] = Field(None, title="array of ids")
47
47
  """
48
48
  array of objects containing integer id each
@@ -50,12 +50,12 @@ class RingPatternSchema(BaseModel):
50
50
  isAromatic: Optional[bool] = None
51
51
 
52
52
 
53
- class Name519(Enum):
53
+ class Name518(Enum):
54
54
  special_bond = "special_bond"
55
55
 
56
56
 
57
57
  class SpecialBondPatternSchema(BaseModel):
58
- name: Optional[Name519] = None
58
+ name: Optional[Name518] = None
59
59
  atoms: Optional[List[ObjectWithId]] = Field(None, title="array of ids")
60
60
  """
61
61
  array of objects containing integer id each
@@ -55,7 +55,7 @@ class LocationSchema(BaseModel):
55
55
  """
56
56
 
57
57
 
58
- class Type56(Enum):
58
+ class Type46(Enum):
59
59
  literature = "literature"
60
60
 
61
61
 
@@ -65,7 +65,7 @@ class PagesSchema(BaseModel):
65
65
 
66
66
 
67
67
  class LiteratureReferenceSchema(BaseModel):
68
- type: Optional[Type56] = None
68
+ type: Optional[Type46] = None
69
69
  doi: Optional[str] = None
70
70
  """
71
71
  Digital Object Identifier of the reference.
@@ -55,7 +55,7 @@ class LocationSchema(BaseModel):
55
55
  """
56
56
 
57
57
 
58
- class Type67(Enum):
58
+ class Type55(Enum):
59
59
  literature = "literature"
60
60
 
61
61
 
@@ -65,7 +65,7 @@ class PagesSchema(BaseModel):
65
65
 
66
66
 
67
67
  class LiteratureReferenceSchema(BaseModel):
68
- type: Optional[Type67] = None
68
+ type: Optional[Type55] = None
69
69
  doi: Optional[str] = None
70
70
  """
71
71
  Digital Object Identifier of the reference.
@@ -51,7 +51,7 @@ class LocationSchema(BaseModel):
51
51
  """
52
52
 
53
53
 
54
- class Type78(Enum):
54
+ class Type64(Enum):
55
55
  literature = "literature"
56
56
 
57
57
 
@@ -61,7 +61,7 @@ class PagesSchema(BaseModel):
61
61
 
62
62
 
63
63
  class LiteratureReferenceSchema(BaseModel):
64
- type: Optional[Type78] = None
64
+ type: Optional[Type64] = None
65
65
  doi: Optional[str] = None
66
66
  """
67
67
  Digital Object Identifier of the reference.
@@ -21,6 +21,7 @@ class TemplateSchema(BaseModel):
21
21
  applicationVersion: Optional[str] = None
22
22
  executableName: Optional[str] = None
23
23
  contextProviders: Optional[List[NameResultSchema]] = None
24
+ isManuallyChanged: Optional[bool] = None
24
25
  name: str
25
26
  """
26
27
  Input file name. e.g. pw_scf.in
@@ -29,7 +30,7 @@ class TemplateSchema(BaseModel):
29
30
  """
30
31
  Content of the input file. e.g. &CONTROL calculation='scf' ...
31
32
  """
32
- rendered: str
33
+ rendered: Optional[str] = None
33
34
  """
34
35
  Rendered content of the input file. e.g. &CONTROL calculation='scf' ...
35
36
  """
@@ -200,7 +200,7 @@ class ExecutionUnitInputItemSchemaForPhysicsBasedSimulationEngines(BaseModel):
200
200
  """
201
201
  Content of the input file. e.g. &CONTROL calculation='scf' ...
202
202
  """
203
- rendered: str
203
+ rendered: Optional[str] = None
204
204
  """
205
205
  Rendered content of the input file. e.g. &CONTROL calculation='scf' ...
206
206
  """
@@ -200,7 +200,7 @@ class ExecutionUnitInputItemSchemaForPhysicsBasedSimulationEngines(BaseModel):
200
200
  """
201
201
  Content of the input file. e.g. &CONTROL calculation='scf' ...
202
202
  """
203
- rendered: str
203
+ rendered: Optional[str] = None
204
204
  """
205
205
  Rendered content of the input file. e.g. &CONTROL calculation='scf' ...
206
206
  """