mat3ra-esse 2025.8.14.post0__py3-none-any.whl → 2025.10.8.post0__py3-none-any.whl
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- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/core/abstract/_2d_data.py +2 -2
- mat3ra/esse/models/core/abstract/_2d_plot.py +2 -6
- mat3ra/esse/models/core/primitive/_1d_data_series.py +3 -3
- mat3ra/esse/models/core/primitive/axis_3d_names_enum.py +13 -0
- mat3ra/esse/models/core/reference/__init__.py +8 -8
- mat3ra/esse/models/core/reference/exabyte.py +2 -8
- mat3ra/esse/models/core/reference/experiment/__init__.py +2 -2
- mat3ra/esse/models/core/reusable/coordinate_conditions/__init__.py +1 -78
- mat3ra/esse/models/core/reusable/coordinate_conditions/index.py +80 -0
- mat3ra/esse/models/core/reusable/hubbard_parameters.py +48 -0
- mat3ra/esse/models/core/reusable/kpoint.py +16 -0
- mat3ra/esse/models/core/reusable/repetition.py +14 -0
- mat3ra/esse/models/definitions/material.py +13 -0
- mat3ra/esse/models/element.py +10 -8
- mat3ra/esse/models/job/__init__.py +62 -62
- mat3ra/esse/models/material/__init__.py +12 -12
- mat3ra/esse/models/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.py +80 -80
- mat3ra/esse/models/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +80 -80
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/adatom/configuration.py +35 -35
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +80 -80
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/island/configuration.py +53 -53
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/terrace/configuration.py +53 -53
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.py +29 -29
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.py +32 -32
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.py +12 -12
- mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +12 -12
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanoribbon.py +52 -52
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanotape.py +32 -32
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +32 -32
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.py +32 -32
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell_with_gap.py +1151 -0
- mat3ra/esse/models/materials_category/processed_structures/two_dimensional/passivation/configuration.py +17 -17
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.py +8 -8
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.py +12 -12
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_region.py +12 -12
- mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/crystal.py +8 -8
- mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +12 -12
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.py +8 -8
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.py +8 -8
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.py +8 -8
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +12 -12
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +12 -12
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +12 -12
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.py +8 -8
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.py +52 -52
- mat3ra/esse/models/materials_category_components/operations/core/modifications/perturb.py +12 -12
- mat3ra/esse/models/methods_directory/physical/psp/__init__.py +2 -2
- mat3ra/esse/models/methods_directory/physical/psp/file.py +2 -2
- mat3ra/esse/models/methods_directory/physical/psp/file_data_item.py +2 -2
- mat3ra/esse/models/properties_directory/derived_properties.py +6 -6
- mat3ra/esse/models/properties_directory/elemental/atomic_radius.py +1 -1
- mat3ra/esse/models/properties_directory/elemental/electronegativity.py +1 -2
- mat3ra/esse/models/properties_directory/elemental/ionization_potential.py +3 -4
- mat3ra/esse/models/properties_directory/jupyter_notebook_endpoint.py +20 -0
- mat3ra/esse/models/properties_directory/non_scalar/average_potential_profile.py +4 -8
- mat3ra/esse/models/properties_directory/non_scalar/band_gaps.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/band_structure.py +5 -9
- mat3ra/esse/models/properties_directory/non_scalar/charge_density_profile.py +4 -8
- mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +5 -8
- mat3ra/esse/models/properties_directory/non_scalar/dielectric_tensor.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/file_content.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/final_structure.py +22 -0
- mat3ra/esse/models/properties_directory/non_scalar/hubbard_u.py +4 -4
- mat3ra/esse/models/properties_directory/non_scalar/hubbard_v.py +3 -4
- mat3ra/esse/models/properties_directory/non_scalar/hubbard_v_nn.py +3 -4
- mat3ra/esse/models/properties_directory/non_scalar/is_relaxed.py +22 -0
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +10 -14
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +10 -14
- mat3ra/esse/models/properties_directory/non_scalar/potential_profile.py +8 -12
- mat3ra/esse/models/properties_directory/non_scalar/reaction_energy_profile.py +8 -12
- mat3ra/esse/models/properties_directory/non_scalar/stress_tensor.py +5 -7
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +64 -51
- mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +10 -14
- mat3ra/esse/models/properties_directory/non_scalar/workflow.py +2234 -0
- mat3ra/esse/models/properties_directory/reusable/hubbard_parameters.py +48 -0
- mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +1 -1
- mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +1 -1
- mat3ra/esse/models/properties_directory/scalar/formation_energy.py +1 -1
- mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +3 -3
- mat3ra/esse/models/properties_directory/scalar/pressure.py +3 -4
- mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +3 -3
- mat3ra/esse/models/properties_directory/scalar/surface_energy.py +3 -3
- mat3ra/esse/models/properties_directory/scalar/total_energy.py +3 -3
- mat3ra/esse/models/properties_directory/scalar/total_force.py +3 -4
- mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +3 -3
- mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +3 -3
- mat3ra/esse/models/properties_directory/structural/atomic_forces.py +5 -5
- mat3ra/esse/models/properties_directory/structural/basis/atomic_constraints_property.py +3 -3
- mat3ra/esse/models/properties_directory/structural/basis/boundary_conditions.py +30 -0
- mat3ra/esse/models/properties_directory/structural/basis/predicted_properties.py +82 -0
- mat3ra/esse/models/properties_directory/structural/lattice/units/__init__.py +23 -1
- mat3ra/esse/models/properties_directory/structural/magnetic_moments.py +5 -5
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +5 -5
- mat3ra/esse/models/properties_directory/structural/patterns/functional_group.py +1 -1
- mat3ra/esse/models/properties_directory/structural/patterns/ring.py +1 -1
- mat3ra/esse/models/properties_directory/structural/patterns/special_bond.py +1 -1
- mat3ra/esse/models/properties_directory/workflow/convergence/electronic.py +4 -4
- mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +6 -6
- mat3ra/esse/models/property/base.py +1492 -14
- mat3ra/esse/models/property/holder.py +3568 -0
- mat3ra/esse/models/property/meta_holder/Reusable_schema_for_energy_value_with_unit_corresponding_to_a_specific_accuracy_level__e/g.py +31 -0
- mat3ra/esse/models/property/meta_holder.py +140 -0
- mat3ra/esse/models/property/proto_holder.py +86 -0
- mat3ra/esse/models/property/raw.py +27 -11
- mat3ra/esse/models/property/source.py +24 -1
- mat3ra/esse/models/workflow/__init__.py +54 -54
- mat3ra/esse/models/workflow/base_flow.py +4 -4
- mat3ra/esse/models/workflow/subworkflow/__init__.py +7 -7
- mat3ra/esse/models/workflow/subworkflow/unit.py +10 -10
- mat3ra/esse/models/workflow/unit/__init__.py +12 -12
- mat3ra/esse/models/workflow/unit/io/__init__.py +4 -4
- mat3ra/esse/models/workflow/unit/io/db.py +2 -2
- mat3ra/esse/models/workflow/unit/io/object_storage.py +1 -1
- {mat3ra_esse-2025.8.14.post0.dist-info → mat3ra_esse-2025.10.8.post0.dist-info}/METADATA +1 -1
- {mat3ra_esse-2025.8.14.post0.dist-info → mat3ra_esse-2025.10.8.post0.dist-info}/RECORD +122 -118
- mat3ra/esse/models/property/meta.py +0 -200
- mat3ra/esse/models/software_directory/ml/exabyteml.py +0 -28
- mat3ra/esse/models/software_directory/ml/unit/execution/__init__.py +0 -879
- mat3ra/esse/models/software_directory/ml/unit/execution/evaluate/__init__.py +0 -3
- mat3ra/esse/models/software_directory/ml/unit/execution/evaluate/cross_validate.py +0 -293
- mat3ra/esse/models/software_directory/ml/unit/execution/initialize.py +0 -293
- mat3ra/esse/models/software_directory/ml/unit/execution/score.py +0 -286
- mat3ra/esse/models/software_directory/ml/unit/execution/train.py +0 -297
- mat3ra/esse/models/software_directory/ml/unit/processing/__init__.py +0 -276
- mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/__init__.py +0 -167
- mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/manipulation.py +0 -144
- mat3ra/esse/models/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.py +0 -163
- mat3ra/esse/models/software_directory/ml/unit/processing/feature_selection/__init__.py +0 -148
- mat3ra/esse/models/software_directory/ml/unit/processing/feature_selection/filter_based.py +0 -144
- /mat3ra/esse/models/{software_directory/ml → properties_directory/reusable}/__init__.py +0 -0
- /mat3ra/esse/models/{software_directory/ml/unit → property/meta_holder/Reusable_schema_for_energy_value_with_unit_corresponding_to_a_specific_accuracy_level__e}/__init__.py +0 -0
- {mat3ra_esse-2025.8.14.post0.dist-info → mat3ra_esse-2025.10.8.post0.dist-info}/WHEEL +0 -0
- {mat3ra_esse-2025.8.14.post0.dist-info → mat3ra_esse-2025.10.8.post0.dist-info}/licenses/LICENSE.md +0 -0
- {mat3ra_esse-2025.8.14.post0.dist-info → mat3ra_esse-2025.10.8.post0.dist-info}/top_level.txt +0 -0
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value: List[ArrayOf3NumberElementsSchema] = Field(..., max_length=3, min_length=3, title="matrix 3x3 schema")
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class Name753(Enum):
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class Name754(Enum):
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class Name755(Enum):
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class Name756(Enum):
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|
total_energy_contributions = "total_energy_contributions"
|
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@@ -141,58 +150,62 @@ class Units(Enum):
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class
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|
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class TotalEnergyContributionsPropertySchema(BaseModel):
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|
temperatureEntropy: Optional[ScalarSchema] = Field(None, title="scalar schema")
|
|
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"""
|
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|
product of temperature and configurational entropy
|
|
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"""
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|
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|
|
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|
+
harris_foulkes: Optional[ScalarSchema97] = Field(None, title="scalar schema")
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|
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|
"""
|
|
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|
non self-consitent energy based on an input charge density
|
|
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"""
|
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|
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+
smearing: Optional[ScalarSchema98] = Field(None, title="scalar schema")
|
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|
+
"""
|
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+
smearing energy
|
|
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+
"""
|
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|
+
one_electron: Optional[ScalarSchema99] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
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|
kinetic + pseudopotential energy
|
|
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|
"""
|
|
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|
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hartree: Optional[
|
|
170
|
+
hartree: Optional[ScalarSchema100] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
159
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|
energy due to coulomb potential
|
|
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"""
|
|
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|
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exchange: Optional[
|
|
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|
+
exchange: Optional[ScalarSchema101] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
163
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|
exchange energy
|
|
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|
"""
|
|
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|
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|
|
178
|
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exchange_correlation: Optional[ScalarSchema102] = Field(None, title="scalar schema")
|
|
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|
"""
|
|
167
180
|
exchange and correlation energy per particle
|
|
168
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|
"""
|
|
169
|
-
ewald: Optional[
|
|
182
|
+
ewald: Optional[ScalarSchema103] = Field(None, title="scalar schema")
|
|
170
183
|
"""
|
|
171
184
|
summation of interaction energies at long length scales due to coloumbic interactions
|
|
172
185
|
"""
|
|
173
|
-
alphaZ: Optional[
|
|
186
|
+
alphaZ: Optional[ScalarSchema104] = Field(None, title="scalar schema")
|
|
174
187
|
"""
|
|
175
188
|
divergent electrostatic ion interaction in compensating electron gas
|
|
176
189
|
"""
|
|
177
|
-
atomicEnergy: Optional[
|
|
190
|
+
atomicEnergy: Optional[ScalarSchema105] = Field(None, title="scalar schema")
|
|
178
191
|
"""
|
|
179
192
|
kinetic energy of wavefunctions in the atomic limit
|
|
180
193
|
"""
|
|
181
|
-
eigenvalues: Optional[
|
|
194
|
+
eigenvalues: Optional[ScalarSchema106] = Field(None, title="scalar schema")
|
|
182
195
|
"""
|
|
183
196
|
sum of one electron energies of kinetic, electrostatic, and exchange correlation
|
|
184
197
|
"""
|
|
185
|
-
PAWDoubleCounting2: Optional[
|
|
198
|
+
PAWDoubleCounting2: Optional[ScalarSchema107] = Field(None, title="scalar schema")
|
|
186
199
|
"""
|
|
187
200
|
double counting correction 2
|
|
188
201
|
"""
|
|
189
|
-
PAWDoubleCounting3: Optional[
|
|
202
|
+
PAWDoubleCounting3: Optional[ScalarSchema108] = Field(None, title="scalar schema")
|
|
190
203
|
"""
|
|
191
204
|
double counting correction 3
|
|
192
205
|
"""
|
|
193
|
-
hartreeFock: Optional[
|
|
206
|
+
hartreeFock: Optional[ScalarSchema109] = Field(None, title="scalar schema")
|
|
194
207
|
"""
|
|
195
208
|
hartree-fock contribution
|
|
196
209
|
"""
|
|
197
|
-
name:
|
|
210
|
+
name: Name756
|
|
198
211
|
units: Optional[Units] = None
|
|
@@ -32,25 +32,25 @@ class AxisSchema(BaseModel):
|
|
|
32
32
|
"""
|
|
33
33
|
|
|
34
34
|
|
|
35
|
-
class
|
|
35
|
+
class Label33(Enum):
|
|
36
36
|
Intensity = "Intensity"
|
|
37
37
|
Absorbance = "Absorbance"
|
|
38
38
|
Absorption_coefficient = "Absorption coefficient"
|
|
39
39
|
|
|
40
40
|
|
|
41
|
-
class
|
|
41
|
+
class Units336(Enum):
|
|
42
42
|
field_debye_angstrom__2 = "(debye/angstrom)^2"
|
|
43
43
|
km_mol = "km/mol"
|
|
44
44
|
m_mol = "m/mol"
|
|
45
45
|
a_u_ = "a.u."
|
|
46
46
|
|
|
47
47
|
|
|
48
|
-
class
|
|
49
|
-
label:
|
|
48
|
+
class AxisSchema36(BaseModel):
|
|
49
|
+
label: Label33
|
|
50
50
|
"""
|
|
51
51
|
label of an axis object
|
|
52
52
|
"""
|
|
53
|
-
units: Optional[
|
|
53
|
+
units: Optional[Units336] = None
|
|
54
54
|
"""
|
|
55
55
|
units for an axis
|
|
56
56
|
"""
|
|
@@ -60,16 +60,12 @@ class Name(Enum):
|
|
|
60
60
|
vibrational_spectrum = "vibrational_spectrum"
|
|
61
61
|
|
|
62
62
|
|
|
63
|
-
class
|
|
63
|
+
class VibrationalSpectrumPropertySchema(BaseModel):
|
|
64
64
|
xAxis: AxisSchema = Field(..., title="axis schema")
|
|
65
|
-
yAxis:
|
|
66
|
-
name:
|
|
67
|
-
|
|
68
|
-
"""
|
|
69
|
-
Legend of y Axis data series
|
|
70
|
-
"""
|
|
71
|
-
xDataArray: List
|
|
65
|
+
yAxis: AxisSchema36 = Field(..., title="axis schema")
|
|
66
|
+
name: Name
|
|
67
|
+
xDataArray: List[Union[float, List[float]]]
|
|
72
68
|
"""
|
|
73
69
|
array containing values of x Axis
|
|
74
70
|
"""
|
|
75
|
-
yDataSeries: List[List[
|
|
71
|
+
yDataSeries: List[List[float]] = Field(..., title="1 dimension data series schema")
|