mat3ra-esse 2025.7.29.post0__py3-none-any.whl → 2025.8.6.post0__py3-none-any.whl
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- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +6 -6
- mat3ra/esse/models/core/reusable/energy.py +2 -2
- mat3ra/esse/models/element.py +6 -6
- mat3ra/esse/models/material/__init__.py +14 -14
- mat3ra/esse/models/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.py +549 -2319
- mat3ra/esse/models/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +537 -2307
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/adatom/configuration.py +206 -190
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +56 -1826
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/island/configuration.py +331 -311
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/terrace/configuration.py +331 -311
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.py +72 -72
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.py +72 -72
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.py +14 -14
- mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +14 -14
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanoribbon.py +150 -134
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanotape.py +86 -74
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +84 -72
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.py +84 -72
- mat3ra/esse/models/materials_category/processed_structures/two_dimensional/passivation/configuration.py +70 -70
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_region.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/crystal.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.py +16 -16
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/{repetitions.py → three_dimensional/repetitions.py} +1 -1
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.py +148 -132
- mat3ra/esse/models/materials_category_components/operations/core/combinations/stack.py +14 -2
- mat3ra/esse/models/materials_category_components/operations/core/modifications/perturb.py +14 -14
- mat3ra/esse/models/properties_directory/derived_properties.py +11 -11
- mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
- mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/formation_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
- mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +2 -2
- {mat3ra_esse-2025.7.29.post0.dist-info → mat3ra_esse-2025.8.6.post0.dist-info}/METADATA +1 -1
- {mat3ra_esse-2025.7.29.post0.dist-info → mat3ra_esse-2025.8.6.post0.dist-info}/RECORD +59 -60
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell_with_gap.py +0 -1151
- {mat3ra_esse-2025.7.29.post0.dist-info → mat3ra_esse-2025.8.6.post0.dist-info}/WHEEL +0 -0
- {mat3ra_esse-2025.7.29.post0.dist-info → mat3ra_esse-2025.8.6.post0.dist-info}/licenses/LICENSE.md +0 -0
- {mat3ra_esse-2025.7.29.post0.dist-info → mat3ra_esse-2025.8.6.post0.dist-info}/top_level.txt +0 -0
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@@ -144,7 +144,7 @@ class TerminationSchema(BaseModel):
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class TerminationSchema25(BaseModel):
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chemical_elements: Union[ChemicalElements, constr(pattern=r"^([A-Z][a-z]?[0-9]*)+$")] = Field(
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..., title="Chemical Elements"
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)
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class Value135(Enum):
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Vac = "Vac"
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class AtomicElementSchema(BaseModel):
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value: Union[Value,
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value: Union[Value, Value135]
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"""
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All elements, including extra elements
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class Name545(Enum):
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density = "density"
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class Units222(Enum):
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g_cm_3 = "g/cm^3"
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class DensitySchema(BaseModel):
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name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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units: Optional[
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units: Optional[Units222] = None
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class Units223(Enum):
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angstrom = "angstrom"
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class ScalarSchema(BaseModel):
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class Name546(Enum):
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symmetry = "symmetry"
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name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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class Name547(Enum):
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elemental_ratio = "elemental_ratio"
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class Name548(Enum):
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p_norm = "p-norm"
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inchi = "inchi"
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class Name551(Enum):
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default = "default"
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atomsTooClose = "atomsTooClose"
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atomsOverlap = "atomsOverlap"
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class MaterialConsistencyCheckSchema(BaseModel):
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|
|
976
|
-
class
|
|
976
|
+
class Name555(Enum):
|
|
977
977
|
elemental_ratio = "elemental_ratio"
|
|
978
978
|
|
|
979
979
|
|
|
980
|
-
class
|
|
980
|
+
class ElementalRatio65(BaseModel):
|
|
981
981
|
name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
|
|
982
982
|
value: confloat(ge=0.0, le=1.0)
|
|
983
983
|
element: Optional[str] = None
|
|
@@ -986,11 +986,11 @@ class ElementalRatio77(BaseModel):
|
|
|
986
986
|
"""
|
|
987
987
|
|
|
988
988
|
|
|
989
|
-
class
|
|
989
|
+
class Name556(Enum):
|
|
990
990
|
p_norm = "p-norm"
|
|
991
991
|
|
|
992
992
|
|
|
993
|
-
class
|
|
993
|
+
class PNorm64(BaseModel):
|
|
994
994
|
name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
|
|
995
995
|
degree: Optional[int] = None
|
|
996
996
|
"""
|
|
@@ -999,56 +999,56 @@ class PNorm76(BaseModel):
|
|
|
999
999
|
value: float
|
|
1000
1000
|
|
|
1001
1001
|
|
|
1002
|
-
class
|
|
1002
|
+
class Name557(Enum):
|
|
1003
1003
|
inchi = "inchi"
|
|
1004
1004
|
|
|
1005
1005
|
|
|
1006
|
-
class
|
|
1006
|
+
class InChIRepresentationSchema65(BaseModel):
|
|
1007
1007
|
name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
|
|
1008
1008
|
value: str
|
|
1009
1009
|
|
|
1010
1010
|
|
|
1011
|
-
class
|
|
1011
|
+
class Name558(Enum):
|
|
1012
1012
|
inchi_key = "inchi_key"
|
|
1013
1013
|
|
|
1014
1014
|
|
|
1015
|
-
class
|
|
1015
|
+
class InChIKeyRepresentationSchema65(BaseModel):
|
|
1016
1016
|
name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
|
|
1017
1017
|
value: str
|
|
1018
1018
|
|
|
1019
1019
|
|
|
1020
|
-
class
|
|
1020
|
+
class DerivedPropertiesSchema65(
|
|
1021
1021
|
RootModel[
|
|
1022
1022
|
Union[
|
|
1023
|
-
|
|
1024
|
-
|
|
1025
|
-
|
|
1026
|
-
|
|
1027
|
-
|
|
1028
|
-
|
|
1029
|
-
|
|
1023
|
+
VolumeSchema64,
|
|
1024
|
+
DensitySchema65,
|
|
1025
|
+
SymmetrySchema64,
|
|
1026
|
+
ElementalRatio65,
|
|
1027
|
+
PNorm64,
|
|
1028
|
+
InChIRepresentationSchema65,
|
|
1029
|
+
InChIKeyRepresentationSchema65,
|
|
1030
1030
|
]
|
|
1031
1031
|
]
|
|
1032
1032
|
):
|
|
1033
1033
|
root: Union[
|
|
1034
|
-
|
|
1035
|
-
|
|
1036
|
-
|
|
1037
|
-
|
|
1038
|
-
|
|
1039
|
-
|
|
1040
|
-
|
|
1034
|
+
VolumeSchema64,
|
|
1035
|
+
DensitySchema65,
|
|
1036
|
+
SymmetrySchema64,
|
|
1037
|
+
ElementalRatio65,
|
|
1038
|
+
PNorm64,
|
|
1039
|
+
InChIRepresentationSchema65,
|
|
1040
|
+
InChIKeyRepresentationSchema65,
|
|
1041
1041
|
] = Field(..., discriminator="name")
|
|
1042
1042
|
|
|
1043
1043
|
|
|
1044
|
-
class
|
|
1044
|
+
class Name559(Enum):
|
|
1045
1045
|
default = "default"
|
|
1046
1046
|
atomsTooClose = "atomsTooClose"
|
|
1047
1047
|
atomsOverlap = "atomsOverlap"
|
|
1048
1048
|
|
|
1049
1049
|
|
|
1050
|
-
class
|
|
1051
|
-
name:
|
|
1050
|
+
class MaterialConsistencyCheckSchema64(BaseModel):
|
|
1051
|
+
name: Name559
|
|
1052
1052
|
"""
|
|
1053
1053
|
Name of the consistency check that is performed, which is listed in an enum.
|
|
1054
1054
|
"""
|
|
@@ -1066,7 +1066,7 @@ class MaterialConsistencyCheckSchema76(BaseModel):
|
|
|
1066
1066
|
"""
|
|
1067
1067
|
|
|
1068
1068
|
|
|
1069
|
-
class
|
|
1069
|
+
class CrystalSchema60(BaseModel):
|
|
1070
1070
|
formula: Optional[str] = None
|
|
1071
1071
|
"""
|
|
1072
1072
|
reduced chemical formula
|
|
@@ -1075,9 +1075,9 @@ class CrystalSchema72(BaseModel):
|
|
|
1075
1075
|
"""
|
|
1076
1076
|
chemical formula based on the number of atoms of each element in the supercell
|
|
1077
1077
|
"""
|
|
1078
|
-
basis:
|
|
1079
|
-
lattice:
|
|
1080
|
-
derivedProperties: Optional[List[
|
|
1078
|
+
basis: BasisSchema64 = Field(..., title="basis schema")
|
|
1079
|
+
lattice: LatticeSchema64 = Field(..., title="lattice schema")
|
|
1080
|
+
derivedProperties: Optional[List[DerivedPropertiesSchema65]] = Field(None, title="derived properties schema")
|
|
1081
1081
|
external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
|
|
1082
1082
|
"""
|
|
1083
1083
|
information about a database source
|
|
@@ -1098,7 +1098,7 @@ class CrystalSchema72(BaseModel):
|
|
|
1098
1098
|
"""
|
|
1099
1099
|
Whether to work in the finite molecular picture (usually with atomic orbital basis)
|
|
1100
1100
|
"""
|
|
1101
|
-
consistencyChecks: Optional[List[
|
|
1101
|
+
consistencyChecks: Optional[List[MaterialConsistencyCheckSchema64]] = None
|
|
1102
1102
|
field_id: Optional[str] = Field(None, alias="_id")
|
|
1103
1103
|
"""
|
|
1104
1104
|
entity identity
|
|
@@ -1132,12 +1132,20 @@ class VacuumConfigurationSchema(BaseModel):
|
|
|
1132
1132
|
"""
|
|
1133
1133
|
Size of the vacuum slab in angstroms
|
|
1134
1134
|
"""
|
|
1135
|
-
crystal:
|
|
1135
|
+
crystal: CrystalSchema60 = Field(..., title="Crystal Schema")
|
|
1136
1136
|
"""
|
|
1137
1137
|
A crystal structure, referencing the base material schema
|
|
1138
1138
|
"""
|
|
1139
1139
|
|
|
1140
1140
|
|
|
1141
|
+
class ObjectWithId(BaseModel):
|
|
1142
|
+
value: Optional[confloat(ge=0.0)] = None
|
|
1143
|
+
id: int
|
|
1144
|
+
"""
|
|
1145
|
+
integer id of this entry
|
|
1146
|
+
"""
|
|
1147
|
+
|
|
1148
|
+
|
|
1141
1149
|
class NanoTapeConfigurationSchema(BaseModel):
|
|
1142
1150
|
stack_components: List[Union[CrystalLatticeLinesUniqueRepeatedSchema, VacuumConfigurationSchema]] = Field(
|
|
1143
1151
|
..., max_length=2, min_length=2
|
|
@@ -1146,3 +1154,7 @@ class NanoTapeConfigurationSchema(BaseModel):
|
|
|
1146
1154
|
"""
|
|
1147
1155
|
Enum for axis types
|
|
1148
1156
|
"""
|
|
1157
|
+
gaps: Optional[List[ObjectWithId]] = None
|
|
1158
|
+
"""
|
|
1159
|
+
Gap distances between stack components as an array of objects with id and value
|
|
1160
|
+
"""
|